Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003801.1

Orthogroup ID

OG0007542

Physical Location & Seq

Genomic Coordinates Forward (+)

59998 .. 61291

Gene Structure 1294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgaagctcactttcacaacgaaagagattgatgtaacggaatggaaaggggcaggtgttggtgttacgcagaaggacttggcgaaatatcagaactcgaaattcgaaaatctgatattgcagaagctggaatcctgtttgggtggggtgttggctgaggtcttgactgaggaggacttcacaggaaagtctggccagtctactgttgttaggcttcctggtcttggctcgaagagggttggttgtttgggcttggacaatttggttcgtctacagaagattttaaggaggttctgggctgttggttgggttgattgggaaaatgtgaagttttctaaggttgaattgctcccaaaaggcttggaaatccggtttcaattgctctcaataggcttggaaatctggtttctttcacagaaggcaattgttcatacctacactagcaagactagtttgctatcatcaccaagcataagtaacacccactttgggacatccacgagacatggcaaggcccaaccgcgacatccatcgtgtagccctatgttcaagctacgccacggtatccggaagtcacaaatccgccaccgggaagccacctttccgcccttgccaagatgccaccacaacatagctttctacatgcttctaggctttctagactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

221

Amino Acids

24.99

Weight (kDa)

9.83

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	31 - 90	1e-08	Cytosol aminopeptidase family, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007542)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c22g0500401 RchiOBHm_Chr1g0347551 RchiOBHm_Chr1g0352991 RchiOBHm_Chr2g0131621 RchiOBHm_Chr4g0391721 RchiOBHm_Chr5g0007021
rosa_laevigata	RLG00000010220
rosa_multiflora	Rmu_sc0003801.1_g000018
rosa_roxburghii	Rroxscaffold_1G00045560 Rroxscaffold_1G00066350 Rroxscaffold_5G00374400 Rroxscaffold_7G00194740
rosa_rugosa	Rorug03G0294700 Rorug06G0151300 Rorug06G0174500 Rorug07G0267900
rosa_samantha	Rh2AG498100 Rh2BG358200 Rh2CG484200 Rh4BG175000 Rh4DG006800 Rh5DG396300 Rh6DG087400 Rh7BG461200
rosa_wichuraiana	Rw4G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	44
Acc36I	ACCTGC	1 cut(s)	44
AccI	GTMKAC	2 cut(s)	200, 271
AccII	CGCG	1 cut(s)	523
AccIII	TCCGGA	1 cut(s)	567
AciI	CCGC	3 cut(s)	521, 583, 605
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	101
AfiI	CCNNNNNNNGG	3 cut(s)	224, 489, 589
AgsI	TTSAA	3 cut(s)	344, 377, 550
AhlI	ACTAGT	1 cut(s)	449
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	4 cut(s)	7, 127, 553, 635
AluI	AGCT	4 cut(s)	7, 127, 553, 635
Alw26I	GTCTC	1 cut(s)	496
AlwNI	CAGNNNCTG	1 cut(s)	127
Aor13HI	TCCGGA	1 cut(s)	567
AoxI	GGCC	2 cut(s)	193, 513
ApoI	RAATTY	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	514
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	1 cut(s)	456
AsuII	TTCGAA	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	195
BauI	CACGAG	1 cut(s)	499
BbvCI	CCTCAGC	1 cut(s)	156
BccI	CCATC	1 cut(s)	538
BciT130I	CCWGG	1 cut(s)	219
BciVI	GTATCC	1 cut(s)	575
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	1 cut(s)	496
BcuI	ACTAGT	1 cut(s)	449
BfaI	CTAG	5 cut(s)	441, 450, 650, 659, 664
BfmI	CTRYAG	1 cut(s)	272
BfuAI	ACCTGC	1 cut(s)	44
BfuI	GTATCC	1 cut(s)	575
Bme1390I	CCNGG	2 cut(s)	219, 590
BmgT120I	GGNCC	1 cut(s)	514
BmrFI	CCNGG	2 cut(s)	219, 590
BmsI	GCATC	1 cut(s)	608
Bpu10I	CCTNAGC	1 cut(s)	156
Bpu14I	TTCGAA	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	590
BsaJI	CCNNGG	1 cut(s)	559
BsaWI	WCCGGW	2 cut(s)	369, 567
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 489, 589
Bse1I	ACTGG	1 cut(s)	196
BseAI	TCCGGA	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	559
BseGI	GGATG	2 cut(s)	494, 526
BseLI	CCNNNNNNNGG	3 cut(s)	224, 489, 589
BseMII	CTCAG	2 cut(s)	147, 159
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	1 cut(s)	185
Bsh1236I	CGCG	1 cut(s)	523
BshFI	GGCC	2 cut(s)	195, 515
BsiSI	CCGG	3 cut(s)	370, 568, 589
BslFI	GGGAC	1 cut(s)	505
BslI	CCNNNNNNNGG	3 cut(s)	224, 489, 589
BsmAI	GTCTC	1 cut(s)	496
BsmFI	GGGAC	1 cut(s)	505
BsnI	GGCC	2 cut(s)	195, 515
Bsp119I	TTCGAA	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	567
BspACI	CCGC	3 cut(s)	521, 583, 605
BspANI	GGCC	2 cut(s)	195, 515
BspCNI	CTCAG	2 cut(s)	148, 160
BspEI	TCCGGA	1 cut(s)	567
BspFNI	CGCG	1 cut(s)	523
BspMI	ACCTGC	1 cut(s)	44
BspT104I	TTCGAA	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	559
BssSI	CACGAG	1 cut(s)	499
Bst2BI	CACGAG	1 cut(s)	499
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	2 cut(s)	205, 563
Bst6I	CTCTTC	1 cut(s)	227
BstBI	TTCGAA	1 cut(s)	105
BstDEI	CTNAG	3 cut(s)	156, 168, 336
BstDSI	CCRYGG	1 cut(s)	559
BstF5I	GGATG	2 cut(s)	494, 526
BstFNI	CGCG	1 cut(s)	523
BstMAI	GTCTC	1 cut(s)	496
BstNI	CCWGG	1 cut(s)	219
BstNSI	RCATGY	1 cut(s)	646
BstSCI	CCNGG	2 cut(s)	217, 588
BstSFI	CTRYAG	1 cut(s)	272
BstUI	CGCG	1 cut(s)	523
BsuI	GTATCC	1 cut(s)	575
BsuRI	GGCC	2 cut(s)	195, 515
BtgI	CCRYGG	1 cut(s)	559
BtsCI	GGATG	2 cut(s)	494, 526
BveI	ACCTGC	1 cut(s)	44
CaiI	CAGNNNCTG	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	514
CviAII	CATG	2 cut(s)	506, 643
DdeI	CTNAG	3 cut(s)	156, 168, 336
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
EciI	GGCGGA	2 cut(s)	572, 594
EcoRII	CCWGG	1 cut(s)	217
FaeI	CATG	2 cut(s)	509, 646
FaiI	YATR	6 cut(s)	432, 473, 507, 545, 632, 644
FaqI	GGGAC	1 cut(s)	505
FatI	CATG	2 cut(s)	505, 642
FblI	GTMKAC	2 cut(s)	200, 271
FokI	GGATG	2 cut(s)	481, 513
FspBI	CTAG	5 cut(s)	441, 450, 650, 659, 664
HaeIII	GGCC	2 cut(s)	195, 515
HapII	CCGG	3 cut(s)	370, 568, 589
Hin1II	CATG	2 cut(s)	509, 646
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	3 cut(s)	370, 568, 589
HphI	GGTGA	1 cut(s)	456
Hpy166II	GTNNAC	2 cut(s)	201, 272
Hpy188I	TCNGA	2 cut(s)	93, 114
Hpy188III	TCNNGA	3 cut(s)	163, 568, 659
Hpy8I	GTNNAC	2 cut(s)	201, 272
HpyAV	CCTTC	2 cut(s)	67, 412
HpyCH4III	ACNGT	2 cut(s)	205, 563
HpyCH4V	TGCA	1 cut(s)	121
HpyF3I	CTNAG	3 cut(s)	156, 168, 336
Hsp92II	CATG	2 cut(s)	509, 646
Kpn2I	TCCGGA	1 cut(s)	567
LmnI	GCTCC	1 cut(s)	354
LweI	GCATC	1 cut(s)	608
MaeI	CTAG	5 cut(s)	441, 450, 650, 659, 664
MaeIII	GTNAC	4 cut(s)	34, 64, 476, 573
MboII	GAAGA	2 cut(s)	244, 289
MfeI	CAATTG	2 cut(s)	377, 423
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	5 cut(s)	101, 259, 344, 377, 423
MluNI	TGGCCA	1 cut(s)	195
MnlI	CCTC	5 cut(s)	151, 163, 166, 228, 282
Mox20I	TGGCCA	1 cut(s)	195
MroI	TCCGGA	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	1 cut(s)	284
Msp20I	TGGCCA	1 cut(s)	195
MspI	CCGG	3 cut(s)	370, 568, 589
MspR9I	CCNGG	2 cut(s)	219, 590
MunI	CAATTG	2 cut(s)	377, 423
MvaI	CCWGG	1 cut(s)	219
MvnI	CGCG	1 cut(s)	523
NciI	CCSGG	1 cut(s)	590
NlaIII	CATG	2 cut(s)	509, 646
NmuCI	GTSAC	1 cut(s)	573
NspI	RCATGY	1 cut(s)	646
NspV	TTCGAA	1 cut(s)	105
PaqCI	CACCTGC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	514
PstNI	CAGNNNCTG	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	284
Sau96I	GGNCC	1 cut(s)	514
ScrFI	CCNGG	2 cut(s)	219, 590
SfaNI	GCATC	1 cut(s)	608
SfcI	CTRYAG	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	105
SpeI	ACTAGT	1 cut(s)	449
Sse9I	AATT	5 cut(s)	101, 259, 344, 377, 423
SsiI	CCGC	3 cut(s)	521, 583, 605
SspMI	CTAG	5 cut(s)	441, 450, 650, 659, 664
StyD4I	CCNGG	2 cut(s)	217, 588
TaaI	ACNGT	2 cut(s)	205, 563
TaqI	TCGA	3 cut(s)	98, 105, 230
TasI	AATT	5 cut(s)	101, 259, 344, 377, 423
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TseFI	GTSAC	1 cut(s)	573
Tsp45I	GTSAC	1 cut(s)	573
TspDTI	ATGAA	2 cut(s)	17, 419
TspGWI	ACGGA	1 cut(s)	53
XapI	RAATTY	1 cut(s)	101
XbaI	TCTAGA	1 cut(s)	658
XceI	RCATGY	1 cut(s)	646
XmiI	GTMKAC	2 cut(s)	200, 271
XspI	CTAG	5 cut(s)	441, 450, 650, 659, 664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.