Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003823.1

Orthogroup ID

OG0014751

Physical Location & Seq

Genomic Coordinates Forward (+)

82077 .. 85116

Gene Structure 3040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgtgggtgaattgcagggaagctgattataatctcgaacaattgcccttctctgagaaagtcggagatcgagtagtatgcgatgcttgccaaggttggagttcaccaccacaatggaactctgtttttggtcctacagcagaacggggttggccaactcttgcttcagctatgagcaacctcactccggctttaacattcatacttgccatcatcttcaggacagaaaggctgagtttgagaagcaccaacactcaagccaaagtcatgggtactttagtgtcaatatcaggtgctcttgtagtggttctctataagggcccaacagttctatccactacatcagaaagagattgggtaaagggtggcctattgctaactgtcgggtaccttttgttctctgcctggtctatactccagatgcagttgtattcacggttgtattggcaatcatgtcttcgctttctggttttctttggcctcattgtagttggaggtgccaacatgattgagaaggcatggcatggtgatctggtctttcacaagcatgtcttgatccctttaagtctttgtgttttcgcttttatccgcttgctcgacaaatatcgtaggttgagaaggatgaggaaaaaggcaatgattgtgatgccagtagatgagaagatggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

223

Amino Acids

25.36

Weight (kDa)

9.53

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35310 FvH4_5g35310 FvH4_5g35310 FvH4_5g35310
rosa_chinensis	RchiOBHm_Chr1g0324141 RchiOBHm_Chr7g0241651
rosa_laevigata	RLG00000000557
rosa_multiflora	Rmu_sc0003823.1_g000014 Rmu_sc0005017.1_g000011 Rmu_sc0006803.1_g000012
rosa_roxburghii	Rroxscaffold_3G00218850
rosa_rugosa	Rorug07G0345900 Rorug07G0345900
rosa_samantha	Rh1BG051500 Rh7AG500400 Rh7BG471600
rosa_wichuraiana	Rw7G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	30
Acc65I	GGTACC	1 cut(s)	387
AccB1I	GGYRCC	2 cut(s)	387, 497
AciI	CCGC	1 cut(s)	589
AclWI	GGATC	1 cut(s)	550
AcoI	YGGCCR	1 cut(s)	152
AcuI	CTGAAG	2 cut(s)	150, 202
AfaI	GTAC	2 cut(s)	274, 389
AfiI	CCNNNNNNNGG	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	404
AjuI	GAANNNNNNNTTGG	2 cut(s)	148, 180
AluBI	AGCT	2 cut(s)	23, 170
AluI	AGCT	2 cut(s)	23, 170
Alw21I	GWGCWC	1 cut(s)	298
AlwI	GGATC	1 cut(s)	550
AoxI	GGCC	4 cut(s)	152, 319, 367, 478
ApaI	GGGCCC	1 cut(s)	323
Asp718I	GGTACC	1 cut(s)	387
AspS9I	GGNCC	3 cut(s)	131, 319, 320
AsuHPI	GGTGA	3 cut(s)	19, 96, 539
AvaII	GGWCC	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	323
BaeI	ACNNNNGTAYC	2 cut(s)	264, 297
BalI	TGGCCA	1 cut(s)	154
BanI	GGYRCC	2 cut(s)	387, 497
BanII	GRGCYC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	449
Bbv12I	GWGCWC	1 cut(s)	298
BccI	CCATC	2 cut(s)	218, 658
BcgI	CGANNNNNNTGC	2 cut(s)	60, 94
BciT130I	CCWGG	1 cut(s)	406
BfmI	CTRYAG	1 cut(s)	135
Bme1390I	CCNGG	1 cut(s)	406
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	3 cut(s)	131, 319, 320
BmiI	GGNNCC	3 cut(s)	321, 389, 499
BmrFI	CCNGG	1 cut(s)	406
BmsI	GCATC	3 cut(s)	73, 411, 636
BpiI	GAAGAC	1 cut(s)	449
BpmI	CTGGAG	1 cut(s)	401
BpuEI	CTTGAG	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	650
Bse3DI	GCAATG	1 cut(s)	642
Bse8I	GATNNNNATC	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	406
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	627
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	2 cut(s)	45, 224
BseNI	ACTGG	1 cut(s)	650
BseSI	GKGCMC	1 cut(s)	323
BshFI	GGCC	4 cut(s)	154, 321, 369, 480
BshNI	GGYRCC	2 cut(s)	387, 497
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	187
BsnI	GGCC	4 cut(s)	154, 321, 369, 480
Bsp120I	GGGCCC	1 cut(s)	319
Bsp1286I	GDGCHC	2 cut(s)	298, 323
Bsp143I	GATC	3 cut(s)	67, 529, 555
BspACI	CCGC	1 cut(s)	589
BspANI	GGCC	4 cut(s)	154, 321, 369, 480
BspCNI	CTCAG	2 cut(s)	46, 225
BspLI	GGNNCC	3 cut(s)	321, 389, 499
BspPI	GGATC	1 cut(s)	550
BspT107I	GGYRCC	2 cut(s)	387, 497
BsrDI	GCAATG	1 cut(s)	642
BsrI	ACTGG	1 cut(s)	650
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	3 cut(s)	67, 529, 555
BssT1I	CCWWGG	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	406
Bst4CI	ACNGT	3 cut(s)	328, 382, 438
BstC8I	GCNNGC	2 cut(s)	88, 593
BstDEI	CTNAG	2 cut(s)	54, 233
BstF5I	GGATG	1 cut(s)	627
BstKTI	GATC	3 cut(s)	70, 532, 558
BstMBI	GATC	3 cut(s)	67, 529, 555
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstNI	CCWGG	1 cut(s)	406
BstNSI	RCATGY	1 cut(s)	551
BstSCI	CCNGG	1 cut(s)	404
BstSFI	CTRYAG	1 cut(s)	135
BstSLI	GKGCMC	1 cut(s)	323
BstV2I	GAAGAC	1 cut(s)	449
BstXI	CCANNNNNNTGG	2 cut(s)	114, 268
BsuRI	GGCC	4 cut(s)	154, 321, 369, 480
BtgZI	GCGATG	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	627
Cac8I	GCNNGC	2 cut(s)	88, 593
Cfr13I	GGNCC	3 cut(s)	131, 319, 320
Csp6I	GTAC	2 cut(s)	273, 388
CviAII	CATG	6 cut(s)	268, 453, 505, 519, 524, 548
CviJI	RGCY	9 cut(s)	23, 154, 170, 191, 232, 260, 321, 369, 480
CviKI_1	RGCY	9 cut(s)	23, 154, 170, 191, 232, 260, 321, 369, 480
CviQI	GTAC	2 cut(s)	273, 388
DdeI	CTNAG	2 cut(s)	54, 233
DpnI	GATC	3 cut(s)	69, 531, 557
DpnII	GATC	3 cut(s)	67, 529, 555
EaeI	YGGCCR	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	131
Eco57I	CTGAAG	2 cut(s)	150, 202
EcoO109I	RGGNCCY	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	404
EcoT14I	CCWWGG	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	6 cut(s)	271, 456, 508, 522, 527, 551
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FatI	CATG	6 cut(s)	267, 452, 504, 518, 523, 547
FokI	GGATG	1 cut(s)	634
FriOI	GRGCYC	1 cut(s)	323
GsuI	CTGGAG	1 cut(s)	401
HaeIII	GGCC	4 cut(s)	154, 321, 369, 480
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	6 cut(s)	271, 456, 508, 522, 527, 551
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	3 cut(s)	19, 96, 539
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	3 cut(s)	55, 65, 346
Hpy188III	TCNNGA	4 cut(s)	35, 220, 418, 553
Hpy8I	GTNNAC	1 cut(s)	104
HpyAV	CCTTC	3 cut(s)	58, 508, 612
HpyCH4III	ACNGT	3 cut(s)	328, 382, 438
HpyCH4V	TGCA	2 cut(s)	15, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
HpyF3I	CTNAG	2 cut(s)	54, 233
Hsp92II	CATG	6 cut(s)	271, 456, 508, 522, 527, 551
KpnI	GGTACC	1 cut(s)	391
Kzo9I	GATC	3 cut(s)	67, 529, 555
LpnPI	CCDG	9 cut(s)	201, 205, 276, 391, 418, 431, 452, 518, 663
LweI	GCATC	3 cut(s)	73, 411, 636
MalI	GATC	3 cut(s)	69, 531, 557
MboI	GATC	3 cut(s)	67, 529, 555
MboII	GAAGA	2 cut(s)	208, 449
MfeI	CAATTG	1 cut(s)	41
MhlI	GDGCHC	2 cut(s)	298, 323
MlsI	TGGCCA	1 cut(s)	154
MluCI	AATT	2 cut(s)	10, 41
MluNI	TGGCCA	1 cut(s)	154
MmeI	TCCRAC	3 cut(s)	43, 77, 472
MnlI	CCTC	4 cut(s)	191, 488, 491, 618
Mox20I	TGGCCA	1 cut(s)	154
MscI	TGGCCA	1 cut(s)	154
MseI	TTAA	2 cut(s)	194, 563
MslI	CAYNNNNRTG	2 cut(s)	112, 546
Msp20I	TGGCCA	1 cut(s)	154
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	406
MunI	CAATTG	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	406
MwoI	GCNNNNNNNGC	1 cut(s)	87
NdeII	GATC	3 cut(s)	67, 529, 555
NlaIII	CATG	6 cut(s)	271, 456, 508, 522, 527, 551
NlaIV	GGNNCC	3 cut(s)	321, 389, 499
NspI	RCATGY	1 cut(s)	551
PsiI	TTATAA	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	404
PspN4I	GGNNCC	3 cut(s)	321, 389, 499
PspOMI	GGGCCC	1 cut(s)	319
PspPI	GGNCC	3 cut(s)	131, 319, 320
PsrI	GAACNNNNNNTAC	2 cut(s)	380, 412
RsaI	GTAC	2 cut(s)	274, 389
RsaNI	GTAC	2 cut(s)	273, 388
RseI	CAYNNNNRTG	2 cut(s)	112, 546
SaqAI	TTAA	2 cut(s)	194, 563
Sau3AI	GATC	3 cut(s)	67, 529, 555
Sau96I	GGNCC	3 cut(s)	131, 319, 320
ScrFI	CCNGG	1 cut(s)	406
SduI	GDGCHC	2 cut(s)	298, 323
SetI	ASST	8 cut(s)	25, 97, 172, 183, 295, 393, 499, 614
SfaNI	GCATC	3 cut(s)	73, 411, 636
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	2 cut(s)	112, 546
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
Sse9I	AATT	2 cut(s)	10, 41
SsiI	CCGC	1 cut(s)	589
StyD4I	CCNGG	1 cut(s)	404
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	3 cut(s)	328, 382, 438
TaqI	TCGA	3 cut(s)	36, 70, 597
TasI	AATT	2 cut(s)	10, 41
Tru1I	TTAA	2 cut(s)	194, 563
Tru9I	TTAA	2 cut(s)	194, 563
TspDTI	ATGAA	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	131
XceI	RCATGY	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.