Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003874.1

Orthogroup ID

OG0011955

Physical Location & Seq

Genomic Coordinates Reverse (-)

50943 .. 53764

Gene Structure 2822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atgaattcttatcgtaagtttgtctctgcaaagggttctgtcaaatttgatgctgctgataatgatcttgaatctgggatagatcgactattaaagcaactccaacaagtaaatttacagatgcaagcatgggtatcatcaggaggatcagaaatggtttctcataccttgactagacatcaagagattcttcaagatctcactcaggaattttatcgtctccgctccagccttagagctaagcaggagcacgcttcactacttgaggattttagggagtttgatcgaacaagagttgacttggaagctggtggagattctgcaggaaacgctctcctgaaagaacatgcttctgttagccgaagtacaggacagatggatactgtgatctctcaagctcaagcaactctgggtgcacttgtccttcaacgttcaacatttggcggtattaactcaaagctcagcaacattggcagccgcctcccaacggtaagtcacatcctttctgcaataaagcgtaaaaagtctatggataccatcattctttcacttgtcgcatcagtgtgcacatttctcatatttatctactggtacagtagtggtgtgaggttgggggcatggggtgagcttttggggttttgggcaggtgtgcggttggcgatttcttcgtttgctggtaagaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005801 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031201 GO:0031984 GO:0031985 GO:0032879 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048209 GO:0048284 GO:0050789 GO:0050794 GO:0051049 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

228

Amino Acids

25.13

Weight (kDa)

9.44

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE_C	PF12352	111 - 175	3e-18	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15880
fragaria_vesca	FvH4_6g28830
malus_domestica	MD14G1001700.v1.1
prunus_persica	Prupe.3G096500_v2.0.a1 Prupe.3G096500_v2.0.a1 Prupe.3G096500_v2.0.a1
pyrus_communis	pycom12g00170 pycom49g00130
rosa_chinensis	RchiOBHm_Chr2g0133301 RchiOBHm_Chr2g0133361
rosa_laevigata	RLG00000019325
rosa_multiflora	Rmu_sc0003874.1_g000012
rosa_roxburghii	Rroxscaffold_2G00111230
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363700 Rh2BG369500 Rh2CG346900 Rh2DG386400
rosa_wichuraiana	Rw2G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	635
Acc36I	ACCTGC	1 cut(s)	635
AccBSI	CCGCTC	1 cut(s)	225
AciI	CCGC	4 cut(s)	223, 444, 478, 652
AclI	AACGTT	1 cut(s)	430
AclWI	GGATC	1 cut(s)	154
AcsI	RAATTY	4 cut(s)	4, 44, 112, 209
AfaI	GTAC	2 cut(s)	367, 593
AfiI	CCNNNNNNNGG	1 cut(s)	487
AgsI	TTSAA	4 cut(s)	71, 194, 428, 435
AluBI	AGCT	5 cut(s)	239, 308, 398, 460, 628
AluI	AGCT	5 cut(s)	239, 308, 398, 460, 628
Alw21I	GWGCWC	3 cut(s)	252, 418, 569
Alw26I	GTCTC	2 cut(s)	28, 224
Alw44I	GTGCAC	2 cut(s)	414, 565
AlwI	GGATC	1 cut(s)	154
ApaLI	GTGCAC	2 cut(s)	414, 565
ApeKI	GCWGC	2 cut(s)	53, 474
ApoI	RAATTY	4 cut(s)	4, 44, 112, 209
AsuHPI	GGTGA	1 cut(s)	635
BaeGI	GKGCMC	2 cut(s)	418, 569
BaeI	ACNNNNGTAYC	2 cut(s)	583, 616
Bbv12I	GWGCWC	3 cut(s)	252, 418, 569
BbvI	GCAGC	2 cut(s)	40, 486
BccI	CCATC	2 cut(s)	370, 545
BciVI	GTATCC	2 cut(s)	373, 526
BcoDI	GTCTC	2 cut(s)	28, 224
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	635
BfuI	GTATCC	2 cut(s)	373, 526
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	3 cut(s)	54, 475, 478
BlpI	GCTNAGC	2 cut(s)	240, 461
BlsI	GCNGC	3 cut(s)	55, 476, 479
BmsI	GCATC	3 cut(s)	40, 111, 566
BpmI	CTGGAG	1 cut(s)	211
Bpu1102I	GCTNAGC	2 cut(s)	240, 461
BpuEI	CTTGAG	3 cut(s)	284, 378, 384
BsaBI	GATNNNNATC	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	593
Bse8I	GATNNNNATC	1 cut(s)	63
BseGI	GGATG	1 cut(s)	498
BseJI	GATNNNNATC	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMII	CTCAG	2 cut(s)	218, 475
BseNI	ACTGG	1 cut(s)	593
BseSI	GKGCMC	2 cut(s)	418, 569
BseXI	GCAGC	2 cut(s)	40, 486
BsiHKAI	GWGCWC	3 cut(s)	252, 418, 569
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	2 cut(s)	28, 224
BsmBI	CGTCTC	1 cut(s)	224
Bsp1286I	GDGCHC	3 cut(s)	252, 418, 569
Bsp143I	GATC	6 cut(s)	64, 82, 146, 196, 283, 387
Bsp1720I	GCTNAGC	2 cut(s)	240, 461
BspACI	CCGC	4 cut(s)	223, 444, 478, 652
BspCNI	CTCAG	2 cut(s)	217, 474
BspMAI	CTGCAG	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	635
BspPI	GGATC	1 cut(s)	154
BsrBI	CCGCTC	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	593
BssMI	GATC	6 cut(s)	64, 82, 146, 196, 283, 387
Bst4CI	ACNGT	3 cut(s)	385, 490, 596
BstC8I	GCNNGC	2 cut(s)	126, 252
BstDEI	CTNAG	4 cut(s)	204, 233, 240, 461
BstF5I	GGATG	1 cut(s)	498
BstKTI	GATC	6 cut(s)	67, 85, 149, 199, 286, 390
BstMAI	GTCTC	2 cut(s)	28, 224
BstMBI	GATC	6 cut(s)	64, 82, 146, 196, 283, 387
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 471
BstNSI	RCATGY	1 cut(s)	350
BstSFI	CTRYAG	1 cut(s)	321
BstSLI	GKGCMC	2 cut(s)	418, 569
BstV1I	GCAGC	2 cut(s)	40, 486
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuI	GTATCC	2 cut(s)	373, 526
BtsCI	GGATG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	567
BveI	ACCTGC	1 cut(s)	635
Cac8I	GCNNGC	2 cut(s)	126, 252
Csp6I	GTAC	2 cut(s)	366, 592
CviAII	CATG	3 cut(s)	129, 347, 618
CviJI	RGCY	8 cut(s)	231, 239, 308, 360, 398, 460, 477, 628
CviKI_1	RGCY	8 cut(s)	231, 239, 308, 360, 398, 460, 477, 628
CviQI	GTAC	2 cut(s)	366, 592
DdeI	CTNAG	4 cut(s)	204, 233, 240, 461
DpnI	GATC	6 cut(s)	66, 84, 148, 198, 285, 389
DpnII	GATC	6 cut(s)	64, 82, 146, 196, 283, 387
EcoRI	GAATTC	1 cut(s)	4
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	3 cut(s)	132, 350, 621
FaiI	YATR	6 cut(s)	130, 165, 348, 530, 578, 619
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FatI	CATG	3 cut(s)	128, 346, 617
Fnu4HI	GCNGC	3 cut(s)	54, 475, 478
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	3 cut(s)	54, 475, 478
FspBI	CTAG	1 cut(s)	174
GluI	GCNGC	3 cut(s)	54, 475, 478
GsuI	CTGGAG	1 cut(s)	211
Hin1II	CATG	3 cut(s)	132, 350, 621
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	3 cut(s)	71, 187, 317
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	3 cut(s)	298, 416, 567
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	6 cut(s)	68, 141, 182, 194, 206, 337
Hpy8I	GTNNAC	3 cut(s)	298, 416, 567
HpyAV	CCTTC	1 cut(s)	434
HpyCH4III	ACNGT	3 cut(s)	385, 490, 596
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	6 cut(s)	29, 124, 323, 416, 509, 567
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 471
HpyF3I	CTNAG	4 cut(s)	204, 233, 240, 461
HpySE526I	ACGT	1 cut(s)	430
Hsp92II	CATG	3 cut(s)	132, 350, 621
Kzo9I	GATC	6 cut(s)	64, 82, 146, 196, 283, 387
LmnI	GCTCC	2 cut(s)	230, 247
Lsp1109I	GCAGC	2 cut(s)	40, 486
LweI	GCATC	3 cut(s)	40, 111, 566
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	1 cut(s)	430
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	6 cut(s)	66, 84, 148, 198, 285, 389
MbiI	CCGCTC	1 cut(s)	225
MboI	GATC	6 cut(s)	64, 82, 146, 196, 283, 387
MboII	GAAGA	2 cut(s)	182, 657
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	3 cut(s)	252, 418, 569
MluCI	AATT	5 cut(s)	4, 44, 112, 209, 682
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	4 cut(s)	137, 259, 491, 600
MseI	TTAA	3 cut(s)	92, 450, 685
MslI	CAYNNNNRTG	1 cut(s)	562
MwoI	GCNNNNNNNGC	2 cut(s)	329, 471
NdeII	GATC	6 cut(s)	64, 82, 146, 196, 283, 387
NlaIII	CATG	3 cut(s)	132, 350, 621
NmuCI	GTSAC	1 cut(s)	494
NspI	RCATGY	1 cut(s)	350
PaqCI	CACCTGC	1 cut(s)	635
PfeI	GAWTC	3 cut(s)	71, 187, 317
PkrI	GCNGC	3 cut(s)	55, 476, 479
Psp1406I	AACGTT	1 cut(s)	430
PstI	CTGCAG	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	196
RsaI	GTAC	2 cut(s)	367, 593
RsaNI	GTAC	2 cut(s)	366, 592
RseI	CAYNNNNRTG	1 cut(s)	562
SaqAI	TTAA	3 cut(s)	92, 450, 685
SatI	GCNGC	3 cut(s)	54, 475, 478
Sau3AI	GATC	6 cut(s)	64, 82, 146, 196, 283, 387
SduI	GDGCHC	3 cut(s)	252, 418, 569
SetI	ASST	9 cut(s)	170, 241, 310, 400, 433, 462, 611, 630, 649
SfaNI	GCATC	3 cut(s)	40, 111, 566
SfcI	CTRYAG	1 cut(s)	321
SmiMI	CAYNNNNRTG	1 cut(s)	562
SmlI	CTYRAG	3 cut(s)	263, 393, 399
SmoI	CTYRAG	3 cut(s)	263, 393, 399
Sse9I	AATT	5 cut(s)	4, 44, 112, 209, 682
SsiI	CCGC	4 cut(s)	223, 444, 478, 652
SspMI	CTAG	1 cut(s)	174
TaaI	ACNGT	3 cut(s)	385, 490, 596
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	2 cut(s)	85, 286
TasI	AATT	5 cut(s)	4, 44, 112, 209, 682
TatI	WGTACW	1 cut(s)	365
TauI	GCSGC	1 cut(s)	480
TfiI	GAWTC	3 cut(s)	71, 187, 317
Tru1I	TTAA	3 cut(s)	92, 450, 685
Tru9I	TTAA	3 cut(s)	92, 450, 685
TscAI	CASTG	1 cut(s)	567
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	2 cut(s)	53, 474
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	567
VneI	GTGCAC	2 cut(s)	414, 565
XapI	RAATTY	4 cut(s)	4, 44, 112, 209
XceI	RCATGY	1 cut(s)	350
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.