Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003877.1

Orthogroup ID

OG0012433

Physical Location & Seq

Genomic Coordinates Reverse (-)

9202 .. 10807

Gene Structure 1606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgcaaaaactgattggttctgtgattatttttctgtatgaagaggtggcaaagctgaacgcgaacgagtggtacttcttcagctttcgtgaccggaagtacgcgaccgggttcagaaccaaccgggcgacgacgaccgggtactggaaagctaccggaaaagaccggatggtggtggatccgggaacaggggacatcgtagggatgaggaagacgctggtgttctatcggaacagagctcccaatggaattaaaactgggtggatcatgcatgagtttcgcctcgagaccccacacatgcctcccaaggaggactgggttctgtgccgggttttccacaaaggcaaaggagagatgaacgacaacatgaacctcagccctcatgaccttatgttggagaccaaaacatcatgcaccgctgcgttaacatctcctccaactcatcatgaccaaaacatgcactgtggatatagtaaccagatcacctcattttccaccacgccagtacctcaccaaagccatagccatagccacaataaccaaagcaattctctgctcaacctccttcagctttctgaagaaaaatataccgactctatcaccgaaataagcgcaaaaaatgacgatgattatggatttttatgggacatgaatcttgaagaaaatagctttgaaacaggtactttggacgacatgagatttgagatggagaacagcatggttttgctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

243

Amino Acids

28.02

Weight (kDa)

5.86

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	17 - 95	2.5e-24	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28530 AT4G28530
fragaria_vesca	FvH4_2g21280
malus_domestica	MD05G1195300.v1.1
prunus_persica	Prupe.8G221900_v2.0.a1
pyrus_communis	pycom05g18260 pycom10g15790
rosa_chinensis	RchiOBHm_Chr6g0287861
rosa_laevigata	RLG00000012461
rosa_multiflora	Rmu_sc0003877.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180710 Rroxscaffold_7G00180840
rosa_rugosa	Rorug06G0192900
rosa_samantha	Rh6AG302200 Rh6BG308300 Rh6CG301300 Rh6CG316100 Rh6DG300800
rosa_wichuraiana	Rw6G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	62, 104
AciI	CCGC	1 cut(s)	417
AclWI	GGATC	3 cut(s)	173, 186, 272
AcuI	CTGAAG	3 cut(s)	64, 551, 597
AfaI	GTAC	5 cut(s)	74, 101, 143, 507, 682
AfiI	CCNNNNNNNGG	4 cut(s)	144, 172, 188, 394
AgsI	TTSAA	2 cut(s)	659, 674
AluBI	AGCT	6 cut(s)	55, 84, 152, 239, 571, 669
AluI	AGCT	6 cut(s)	55, 84, 152, 239, 571, 669
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	2 cut(s)	281, 392
AlwI	GGATC	3 cut(s)	173, 186, 272
Ama87I	CYCGRG	1 cut(s)	284
ApeKI	GCWGC	1 cut(s)	419
ArsI	GACNNNNNNTTYG	2 cut(s)	683, 715
AspLEI	GCGC	1 cut(s)	614
AsuC2I	CCSGG	5 cut(s)	109, 125, 139, 183, 329
AsuHPI	GGTGA	3 cut(s)	475, 503, 592
AvaI	CYCGRG	1 cut(s)	284
BaeI	ACNNNNGTAYC	2 cut(s)	489, 522
BamHI	GGATCC	1 cut(s)	178
BanII	GRGCYC	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	241
BbvCI	CCTCAGC	1 cut(s)	374
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	2 cut(s)	163, 700
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BcnI	CCSGG	5 cut(s)	109, 125, 139, 183, 329
BcoDI	GTCTC	2 cut(s)	281, 392
BisI	GCNGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	421
Bme1390I	CCNGG	5 cut(s)	109, 125, 139, 183, 329
BmeT110I	CYCGRG	1 cut(s)	284
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	5 cut(s)	109, 125, 139, 183, 329
BmrI	ACTGGG	2 cut(s)	267, 325
BmuI	ACTGGG	2 cut(s)	267, 325
BpiI	GAAGAC	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	374
BpuMI	CCSGG	5 cut(s)	109, 125, 139, 183, 329
BsaI	GGTCTC	2 cut(s)	281, 392
BsaJI	CCNNGG	1 cut(s)	306
BsaWI	WCCGGW	3 cut(s)	93, 155, 165
BsaXI	ACNNNNNCTCC	2 cut(s)	418, 448
Bsc4I	CCNNNNNNNGG	4 cut(s)	144, 172, 188, 394
Bse1I	ACTGG	4 cut(s)	149, 262, 320, 503
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	2 cut(s)	174, 210
BseLI	CCNNNNNNNGG	4 cut(s)	144, 172, 188, 394
BseMII	CTCAG	1 cut(s)	388
BseNI	ACTGG	4 cut(s)	149, 262, 320, 503
BseRI	GAGGAG	1 cut(s)	423
BseXI	GCAGC	1 cut(s)	406
Bsh1236I	CGCG	2 cut(s)	62, 104
Bsh1285I	CGRYCG	2 cut(s)	108, 138
BsiEI	CGRYCG	2 cut(s)	108, 138
BsiHKAI	GWGCWC	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	8 cut(s)	94, 108, 124, 138, 156, 166, 182, 328
BslFI	GGGAC	2 cut(s)	206, 659
BslI	CCNNNNNNNGG	4 cut(s)	144, 172, 188, 394
BsmAI	GTCTC	2 cut(s)	281, 392
BsmFI	GGGAC	2 cut(s)	206, 659
Bso31I	GGTCTC	2 cut(s)	281, 392
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	3 cut(s)	178, 264, 480
BspACI	CCGC	1 cut(s)	417
BspCNI	CTCAG	1 cut(s)	387
BspFNI	CGCG	2 cut(s)	62, 104
BspHI	TCATGA	2 cut(s)	382, 445
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	3 cut(s)	173, 186, 272
BspTNI	GGTCTC	2 cut(s)	281, 392
BsrI	ACTGG	4 cut(s)	149, 262, 320, 503
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	3 cut(s)	178, 264, 480
BssT1I	CCWWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	464
Bst6I	CTCTTC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	374
BstF5I	GGATG	2 cut(s)	174, 210
BstFNI	CGCG	2 cut(s)	62, 104
BstHHI	GCGC	1 cut(s)	614
BstKTI	GATC	3 cut(s)	181, 267, 483
BstMAI	GTCTC	2 cut(s)	281, 392
BstMBI	GATC	3 cut(s)	178, 264, 480
BstMCI	CGRYCG	2 cut(s)	108, 138
BstNSI	RCATGY	2 cut(s)	301, 460
BstSCI	CCNGG	5 cut(s)	107, 123, 137, 181, 327
BstUI	CGCG	2 cut(s)	62, 104
BstV1I	GCAGC	1 cut(s)	406
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BtsCI	GGATG	2 cut(s)	174, 210
BtsIMutI	CAGTG	1 cut(s)	460
CciI	TCATGA	2 cut(s)	382, 445
CfoI	GCGC	1 cut(s)	614
CseI	GACGC	1 cut(s)	223
Csp6I	GTAC	5 cut(s)	73, 100, 142, 506, 681
CviQI	GTAC	5 cut(s)	73, 100, 142, 506, 681
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	3 cut(s)	180, 266, 482
DpnII	GATC	3 cut(s)	178, 264, 480
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	239
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	241
Eco31I	GGTCTC	2 cut(s)	281, 392
Eco53kI	GAGCTC	1 cut(s)	239
Eco57I	CTGAAG	3 cut(s)	64, 551, 597
Eco88I	CYCGRG	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	306
EcoT22I	ATGCAT	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	306
FaqI	GGGAC	2 cut(s)	206, 659
Fnu4HI	GCNGC	1 cut(s)	420
FokI	GGATG	2 cut(s)	181, 217
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	1 cut(s)	420
GlaI	GCGC	1 cut(s)	613
GluI	GCNGC	1 cut(s)	420
HapII	CCGG	8 cut(s)	94, 108, 124, 138, 156, 166, 182, 328
HgaI	GACGC	1 cut(s)	223
HhaI	GCGC	1 cut(s)	614
Hin6I	GCGC	1 cut(s)	612
HinP1I	GCGC	1 cut(s)	612
HincII	GTYRAC	1 cut(s)	426
HindII	GTYRAC	1 cut(s)	426
HinfI	GANTC	2 cut(s)	593, 652
HpaI	GTTAAC	1 cut(s)	426
HpaII	CCGG	8 cut(s)	94, 108, 124, 138, 156, 166, 182, 328
HphI	GGTGA	3 cut(s)	475, 503, 592
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	3 cut(s)	116, 231, 577
Hpy188III	TCNNGA	5 cut(s)	89, 286, 383, 446, 656
Hpy8I	GTNNAC	1 cut(s)	426
Hpy99I	CGWCG	2 cut(s)	133, 136
HpyAV	CCTTC	1 cut(s)	575
HpyCH4III	ACNGT	1 cut(s)	464
HpyCH4V	TGCA	4 cut(s)	4, 271, 414, 460
HpyF3I	CTNAG	1 cut(s)	374
HspAI	GCGC	1 cut(s)	612
KspAI	GTTAAC	1 cut(s)	426
Kzo9I	GATC	3 cut(s)	178, 264, 480
LmnI	GCTCC	1 cut(s)	244
Lsp1109I	GCAGC	1 cut(s)	406
MaeIII	GTNAC	2 cut(s)	89, 473
MalI	GATC	3 cut(s)	180, 266, 482
MboI	GATC	3 cut(s)	178, 264, 480
MboII	GAAGA	5 cut(s)	53, 70, 223, 590, 671
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	2 cut(s)	249, 547
MlyI	GAGTC	1 cut(s)	587
MmeI	TCCRAC	2 cut(s)	375, 461
Mph1103I	ATGCAT	1 cut(s)	273
MseI	TTAA	2 cut(s)	252, 425
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	8 cut(s)	94, 108, 124, 138, 156, 166, 182, 328
MspR9I	CCNGG	5 cut(s)	109, 125, 139, 183, 329
MvnI	CGCG	2 cut(s)	62, 104
NciI	CCSGG	5 cut(s)	109, 125, 139, 183, 329
NdeII	GATC	3 cut(s)	178, 264, 480
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	273
NspI	RCATGY	2 cut(s)	301, 460
PaeR7I	CTCGAG	1 cut(s)	284
PagI	TCATGA	2 cut(s)	382, 445
PfeI	GAWTC	1 cut(s)	652
PfoI	TCCNGGA	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	421
PleI	GAGTC	1 cut(s)	587
PpsI	GAGTC	1 cut(s)	587
Psp124BI	GAGCTC	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	180
PsrI	GAACNNNNNNTAC	2 cut(s)	56, 88
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	5 cut(s)	74, 101, 143, 507, 682
RsaNI	GTAC	5 cut(s)	73, 100, 142, 506, 681
SacI	GAGCTC	1 cut(s)	241
SaqAI	TTAA	2 cut(s)	252, 425
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	3 cut(s)	178, 264, 480
SchI	GAGTC	1 cut(s)	587
ScrFI	CCNGG	5 cut(s)	109, 125, 139, 183, 329
SduI	GDGCHC	1 cut(s)	241
Sfr274I	CTCGAG	1 cut(s)	284
SlaI	CTCGAG	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	249, 547
SsiI	CCGC	1 cut(s)	417
SstI	GAGCTC	1 cut(s)	241
StyD4I	CCNGG	5 cut(s)	107, 123, 137, 181, 327
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	464
TaqI	TCGA	1 cut(s)	285
TasI	AATT	2 cut(s)	249, 547
TfiI	GAWTC	1 cut(s)	652
Tru1I	TTAA	2 cut(s)	252, 425
Tru9I	TTAA	2 cut(s)	252, 425
TscAI	CASTG	1 cut(s)	467
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	1 cut(s)	419
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	4 cut(s)	54, 371, 383, 665
TspRI	CASTG	1 cut(s)	467
XceI	RCATGY	2 cut(s)	301, 460
XhoI	CTCGAG	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.