Rmu_sc0003887.1_g000010

UPF0586 protein C9orf41 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003887.1
OG0012063
Physical Location & Seq
Forward (+)
35328 .. 43377
8050 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1491 bp
atgtcagtcccaatgaacgagactctgattctccgaagagaagaagaagacgacgaggaacgacgtcgtcaaaggaagctcgaagaagccctagaaatcaaatctctcaggcgcatcatcagcgcctacctcaactatccggaggctgcagaagaggacgtgagaagatatgaaagatcttttaaaatgcttccactagcccataaggctctactgtctcactacccttctaagtttgaaagactaagacggtgtatttctgccaattcatatttcattttcgatatgcttcaggaatttgaacccccacttgatttgagccaggatgtagatgtttgtgatggcctacatcttgaaaacatcccatctgatcatgatgattctagagtaacaaattgctcttctcaatcaacctccgcaagtcaaagtatgcgtgtctccgaatctgatcattcctgtctgggtctggtggaagggagcaacagagtctgcaattcaccagtaggggaggagaagcatgaaggtcatggtgagtccatcaatgggaatcacactttaagcttggaatataccaaacagatacataattgtcatgcgaataatgccattgattccaatggaaatgtgtcctcaacaatgcgcacgtggttggatccatcaattcaattacatgttccattagttgatgttgataaggttcgatgtattatacggaacatagttagagactgggcagcagagggtcagaaagaacgtgatcaatgctacaggcctatacttgaagaacttgattcactatttgttgatcgctgtaaggaaagccctcctgcctgtttagttcctggtgctggacttgggcggcttgcattggagatctcatgtcgaggtttcattagccagggaaatgaattttcatactacatgatgatatgctcaagttttattctcaatgtttgtcaaactgctggggagtggacaatatatccgtggatccacagcaattgtaattcactttcagatgatgaccaacttcgtcccgtttcaataccagatattcatcctgctagtgcagggattactgaaggcttttctatgtgtggcggtgactttgttgaggtttataacgatccaagccaagtaggtgcttgggatgcagttgtgacctgtttctttattgatacggcacacaacattgttgaatacattgaaatcatatcaagaatcttgaaagaaggaggcgtttggataaatatgggtcccctactatatcactttgcagatgtatatggacaaggagatgatatgtctattgaactgagtttggaggatgtgaagagggttgctttgcattatggatttcatatagagaaggaaaagaccattgagacaacctacactacaaatcccagatcaatgatgcaaaaccgatactatgctgctttttggacaatgagaaagatatcagcaagaatagagcacagcactccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00340 map00340
Pfam Domains
Protein Families
N2227

Protein Analysis

496

Amino Acids

56.47

Weight (kDa)

5.08

Isoelectric Point (pI)

57.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CARME PF07942 222 - 486 5.6e-112 Carnosine N-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32170 AT2G32170
fragaria_vesca FvH4_6g39770 FvH4_6g39770
malus_domestica MD09G1136900.v1.1 MD17G1127100.v1.1
prunus_persica Prupe.3G188100_v2.0.a1
pyrus_communis pycom09g05780 pycom17g11940
rosa_chinensis RchiOBHm_Chr2g0153881
rosa_laevigata RLG00000020736
rosa_multiflora Rmu_sc0003887.1_g000010
rosa_roxburghii Rroxscaffold_2G00094680
rosa_rugosa Rorug02G0443000
rosa_samantha Rh2AG506700 Rh2BG516700 Rh2CG492400 Rh2DG528800
rosa_wichuraiana Rw2G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1122
AatII GACGTC 1 cut(s) 67
Acc16I TGCGCA 1 cut(s) 641
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 3 cut(s) 417, 859, 1101
AclWI GGATC 5 cut(s) 647, 660, 985, 998, 1121
AcsI RAATTY 2 cut(s) 296, 908
AcuI CTGAAG 2 cut(s) 275, 1101
AcvI CACGTG 1 cut(s) 645
AcyI GRCGYC 1 cut(s) 64
AfiI CCNNNNNNNGG 2 cut(s) 543, 848
AflIII ACRYGT 1 cut(s) 670
AjiI CACGTC 1 cut(s) 160
AjnI CCWGG 3 cut(s) 321, 841, 897
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 2 cut(s) 79, 561
AluI AGCT 2 cut(s) 79, 561
Alw21I GWGCWC 1 cut(s) 1479
Alw26I GTCTC 5 cut(s) 14, 222, 442, 720, 1379
AlwI GGATC 5 cut(s) 647, 660, 985, 998, 1121
AlwNI CAGNNNCTG 1 cut(s) 489
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 2 cut(s) 343, 770
ApeKI GCWGC 3 cut(s) 146, 734, 1436
ApoI RAATTY 2 cut(s) 296, 908
AspLEI GCGC 3 cut(s) 114, 125, 642
AspS9I GGNCC 1 cut(s) 1256
AsuHPI GGTGA 3 cut(s) 489, 542, 1115
AvaII GGWCC 1 cut(s) 1256
BamHI GGATCC 2 cut(s) 652, 990
BbrPI CACGTG 1 cut(s) 645
BbsI GAAGAC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 1479
BbvI GCAGC 3 cut(s) 133, 746, 1423
BccI CCATC 4 cut(s) 335, 373, 545, 664
BceAI ACGGC 1 cut(s) 1197
BciT130I CCWGG 3 cut(s) 323, 843, 899
BclI TGATCA 3 cut(s) 370, 448, 757
BcoDI GTCTC 5 cut(s) 14, 222, 442, 720, 1379
BfaI CTAG 4 cut(s) 92, 197, 384, 1065
BfmI CTRYAG 2 cut(s) 147, 766
BfoI RGCGCY 1 cut(s) 126
BglI GCCNNNNNGGC 1 cut(s) 206
BglII AGATCT 2 cut(s) 176, 873
BisI GCNGC 4 cut(s) 147, 735, 860, 1437
BlsI GCNGC 4 cut(s) 148, 736, 861, 1438
Bme1390I CCNGG 3 cut(s) 323, 843, 899
Bme18I GGWCC 1 cut(s) 1256
BmgBI CACGTC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 1256
BmiI GGNNCC 4 cut(s) 654, 992, 1257, 1258
BmrFI CCNGG 3 cut(s) 323, 843, 899
BmrI ACTGGG 1 cut(s) 739
BmsI GCATC 3 cut(s) 123, 1141, 1407
BmuI ACTGGG 1 cut(s) 739
BpiI GAAGAC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 919
BsaAI YACGTR 1 cut(s) 645
BsaBI GATNNNNATC 1 cut(s) 1056
BsaHI GRCGYC 1 cut(s) 64
BsaJI CCNNGG 2 cut(s) 898, 986
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 2 cut(s) 543, 848
Bse1I ACTGG 2 cut(s) 500, 734
Bse8I GATNNNNATC 1 cut(s) 1056
BseAI TCCGGA 1 cut(s) 139
BseBI CCWGG 3 cut(s) 323, 843, 899
BseDI CCNNGG 2 cut(s) 898, 986
BseGI GGATG 5 cut(s) 331, 360, 1057, 1156, 1333
BseJI GATNNNNATC 1 cut(s) 1056
BseLI CCNNNNNNNGG 2 cut(s) 543, 848
BseMII CTCAG 2 cut(s) 121, 1307
BseNI ACTGG 2 cut(s) 500, 734
BseRI GAGGAG 1 cut(s) 524
BseXI GCAGC 3 cut(s) 133, 746, 1423
BseYI CCCAGC 1 cut(s) 965
BsgI GTGCAG 1 cut(s) 1089
BshFI GGCC 2 cut(s) 345, 772
BsiHKAI GWGCWC 1 cut(s) 1479
BsiSI CCGG 1 cut(s) 140
BslFI GGGAC 2 cut(s) 1020, 1242
BslI CCNNNNNNNGG 2 cut(s) 543, 848
BsmAI GTCTC 5 cut(s) 14, 222, 442, 720, 1379
BsmFI GGGAC 2 cut(s) 1020, 1242
BsnI GGCC 2 cut(s) 345, 772
Bsp1286I GDGCHC 1 cut(s) 1479
Bsp13I TCCGGA 1 cut(s) 139
BspACI CCGC 3 cut(s) 417, 859, 1101
BspANI GGCC 2 cut(s) 345, 772
BspCNI CTCAG 2 cut(s) 120, 1308
BspEI TCCGGA 1 cut(s) 139
BspHI TCATGA 1 cut(s) 373
BspLI GGNNCC 4 cut(s) 654, 992, 1257, 1258
BspMAI CTGCAG 1 cut(s) 151
BspPI GGATC 5 cut(s) 647, 660, 985, 998, 1121
BspQI GCTCTTC 1 cut(s) 406
BsrI ACTGG 2 cut(s) 500, 734
BssECI CCNNGG 2 cut(s) 898, 986
BssNI GRCGYC 1 cut(s) 64
Bst2UI CCWGG 3 cut(s) 323, 843, 899
Bst4CI ACNGT 2 cut(s) 216, 252
Bst6I CTCTTC 4 cut(s) 31, 147, 406, 1328
BstACI GRCGYC 1 cut(s) 64
BstBAI YACGTR 1 cut(s) 645
BstC8I GCNNGC 1 cut(s) 864
BstDEI CTNAG 4 cut(s) 107, 231, 245, 1316
BstDSI CCRYGG 1 cut(s) 986
BstF5I GGATG 5 cut(s) 331, 360, 1057, 1156, 1333
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 3 cut(s) 114, 125, 642
BstMAI GTCTC 5 cut(s) 14, 222, 442, 720, 1379
BstMWI GCNNNNNNNGC 4 cut(s) 120, 206, 602, 1151
BstNI CCWGG 3 cut(s) 323, 843, 899
BstNSI RCATGY 1 cut(s) 674
BstSCI CCNGG 3 cut(s) 321, 841, 897
BstSFI CTRYAG 2 cut(s) 147, 766
BstV1I GCAGC 3 cut(s) 133, 746, 1423
BstV2I GAAGAC 1 cut(s) 54
BstX2I RGATCY 4 cut(s) 176, 652, 873, 990
BstYI RGATCY 4 cut(s) 176, 652, 873, 990
BsuRI GGCC 2 cut(s) 345, 772
BtgI CCRYGG 1 cut(s) 986
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 5 cut(s) 331, 360, 1057, 1156, 1333
Cac8I GCNNGC 1 cut(s) 864
CaiI CAGNNNCTG 1 cut(s) 489
CciI TCATGA 1 cut(s) 373
CfoI GCGC 3 cut(s) 114, 125, 642
Cfr13I GGNCC 1 cut(s) 1256
CspCI CAANNNNNGTGG 4 cut(s) 297, 332, 983, 1018
CviAII CATG 7 cut(s) 374, 518, 527, 593, 671, 879, 922
DdeI CTNAG 4 cut(s) 107, 231, 245, 1316
DraI TTTAAA 1 cut(s) 184
Eam1104I CTCTTC 4 cut(s) 31, 147, 406, 1328
EarI CTCTTC 4 cut(s) 31, 147, 406, 1328
Eco147I AGGCCT 1 cut(s) 772
Eco32I GATATC 1 cut(s) 1461
Eco47I GGWCC 1 cut(s) 1256
Eco57I CTGAAG 2 cut(s) 275, 1101
Eco72I CACGTG 1 cut(s) 645
EcoO109I RGGNCCY 1 cut(s) 1256
EcoRII CCWGG 3 cut(s) 321, 841, 897
EcoRV GATATC 1 cut(s) 1461
FaeI CATG 7 cut(s) 377, 521, 530, 596, 674, 882, 925
FaqI GGGAC 2 cut(s) 1020, 1242
FatI CATG 7 cut(s) 373, 517, 526, 592, 670, 878, 921
FbaI TGATCA 3 cut(s) 370, 448, 757
Fnu4HI GCNGC 4 cut(s) 147, 735, 860, 1437
FokI GGATG 5 cut(s) 338, 347, 1044, 1163, 1340
Fsp4HI GCNGC 4 cut(s) 147, 735, 860, 1437
FspAI RTGCGCAY 1 cut(s) 641
FspBI CTAG 4 cut(s) 92, 197, 384, 1065
FspI TGCGCA 1 cut(s) 641
GlaI GCGC 3 cut(s) 113, 124, 641
GluI GCNGC 4 cut(s) 147, 735, 860, 1437
GsaI CCCAGC 1 cut(s) 969
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 2 cut(s) 345, 772
HapII CCGG 1 cut(s) 140
HhaI GCGC 3 cut(s) 114, 125, 642
Hin1I GRCGYC 1 cut(s) 64
Hin1II CATG 7 cut(s) 377, 521, 530, 596, 674, 882, 925
Hin6I GCGC 3 cut(s) 112, 123, 640
HinP1I GCGC 3 cut(s) 112, 123, 640
HindIII AAGCTT 1 cut(s) 559
HpaII CCGG 1 cut(s) 140
HphI GGTGA 3 cut(s) 489, 542, 1115
Hpy166II GTNNAC 1 cut(s) 975
Hpy188I TCNGA 7 cut(s) 27, 35, 370, 442, 448, 747, 1018
Hpy188III TCNNGA 7 cut(s) 140, 293, 353, 374, 384, 1218, 1225
Hpy8I GTNNAC 1 cut(s) 975
Hpy99I CGWCG 3 cut(s) 56, 66, 69
HpyAV CCTTC 6 cut(s) 237, 467, 515, 1076, 1226, 1363
HpyCH4III ACNGT 2 cut(s) 216, 252
HpyCH4IV ACGT 4 cut(s) 64, 159, 644, 754
HpyCH4V TGCA 8 cut(s) 149, 492, 866, 1070, 1154, 1277, 1348, 1420
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 206, 602, 1151
HpyF3I CTNAG 4 cut(s) 107, 231, 245, 1316
HpySE526I ACGT 4 cut(s) 64, 159, 644, 754
Hsp92I GRCGYC 1 cut(s) 64
Hsp92II CATG 7 cut(s) 377, 521, 530, 596, 674, 882, 925
HspAI GCGC 3 cut(s) 112, 123, 640
KflI GGGWCCC 1 cut(s) 1256
Kpn2I TCCGGA 1 cut(s) 139
Ksp22I TGATCA 3 cut(s) 370, 448, 757
LguI GCTCTTC 1 cut(s) 406
LmnI GCTCC 1 cut(s) 477
Lsp1109I GCAGC 3 cut(s) 133, 746, 1423
LweI GCATC 3 cut(s) 123, 1141, 1407
MaeI CTAG 4 cut(s) 92, 197, 384, 1065
MaeII ACGT 4 cut(s) 64, 159, 644, 754
MaeIII GTNAC 3 cut(s) 388, 1103, 1159
MfeI CAATTG 1 cut(s) 1000
MflI RGATCY 4 cut(s) 176, 652, 873, 990
MhlI GDGCHC 1 cut(s) 1479
MlyI GAGTC 3 cut(s) 16, 495, 542
MmeI TCCRAC 1 cut(s) 630
MroI TCCGGA 1 cut(s) 139
MseI TTAA 3 cut(s) 183, 557, 1489
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 3 cut(s) 323, 843, 899
MunI CAATTG 1 cut(s) 1000
MvaI CCWGG 3 cut(s) 323, 843, 899
MwoI GCNNNNNNNGC 4 cut(s) 120, 206, 602, 1151
NlaIII CATG 7 cut(s) 377, 521, 530, 596, 674, 882, 925
NlaIV GGNNCC 4 cut(s) 654, 992, 1257, 1258
NmuCI GTSAC 2 cut(s) 1103, 1159
NsbI TGCGCA 1 cut(s) 641
NspI RCATGY 1 cut(s) 674
PagI TCATGA 1 cut(s) 373
PceI AGGCCT 1 cut(s) 772
PciI ACATGT 1 cut(s) 670
PciSI GCTCTTC 1 cut(s) 406
PfeI GAWTC 7 cut(s) 28, 380, 443, 547, 611, 791, 1221
PflFI GACNNNGTC 1 cut(s) 66
PkrI GCNGC 4 cut(s) 148, 736, 861, 1438
PleI GAGTC 3 cut(s) 16, 494, 541
PmaCI CACGTG 1 cut(s) 645
PmlI CACGTG 1 cut(s) 645
PpsI GAGTC 3 cut(s) 16, 494, 541
Ppu21I YACGTR 1 cut(s) 645
PpuMI RGGWCCY 1 cut(s) 1256
PscI ACATGT 1 cut(s) 670
PsiI TTATAA 1 cut(s) 1122
Psp5II RGGWCCY 1 cut(s) 1256
Psp6I CCWGG 3 cut(s) 321, 841, 897
PspCI CACGTG 1 cut(s) 645
PspFI CCCAGC 1 cut(s) 965
PspGI CCWGG 3 cut(s) 321, 841, 897
PspN4I GGNNCC 4 cut(s) 654, 992, 1257, 1258
PspPI GGNCC 1 cut(s) 1256
PspPPI RGGWCCY 1 cut(s) 1256
PstI CTGCAG 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 489
PsuI RGATCY 4 cut(s) 176, 652, 873, 990
PsyI GACNNNGTC 1 cut(s) 66
SapI GCTCTTC 1 cut(s) 406
SaqAI TTAA 3 cut(s) 183, 557, 1489
SatI GCNGC 4 cut(s) 147, 735, 860, 1437
Sau96I GGNCC 1 cut(s) 1256
SchI GAGTC 3 cut(s) 16, 495, 542
ScrFI CCNGG 3 cut(s) 323, 843, 899
SduI GDGCHC 1 cut(s) 1479
SfaNI GCATC 3 cut(s) 123, 1141, 1407
SfcI CTRYAG 2 cut(s) 147, 766
SinI GGWCC 1 cut(s) 1256
SmlI CTYRAG 1 cut(s) 934
SmoI CTYRAG 1 cut(s) 934
SseBI AGGCCT 1 cut(s) 772
SsiI CCGC 3 cut(s) 417, 859, 1101
SspMI CTAG 4 cut(s) 92, 197, 384, 1065
StuI AGGCCT 1 cut(s) 772
StyD4I CCNGG 3 cut(s) 321, 841, 897
TaaI ACNGT 2 cut(s) 216, 252
TaiI ACGT 4 cut(s) 67, 162, 647, 757
TaqI TCGA 4 cut(s) 81, 282, 700, 883
TauI GCSGC 1 cut(s) 862
TfiI GAWTC 7 cut(s) 28, 380, 443, 547, 611, 791, 1221
Tru1I TTAA 3 cut(s) 183, 557, 1489
Tru9I TTAA 3 cut(s) 183, 557, 1489
TseFI GTSAC 2 cut(s) 1103, 1159
TseI GCWGC 3 cut(s) 146, 734, 1436
Tsp45I GTSAC 2 cut(s) 1103, 1159
TspGWI ACGGA 2 cut(s) 727, 975
Tth111I GACNNNGTC 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 1256
XapI RAATTY 2 cut(s) 296, 908
XbaI TCTAGA 1 cut(s) 383
XceI RCATGY 1 cut(s) 674
XspI CTAG 4 cut(s) 92, 197, 384, 1065
ZraI GACGTC 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.