Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003940.1

Orthogroup ID

OG0007594

Physical Location & Seq

Genomic Coordinates Forward (+)

58041 .. 62658

Gene Structure 4618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atggagactgaggcacaatcagcactgaaggagggggatgcacagcccatgaaatggacaatgcgattgagggttgttttacatcttgcacaagccctagaatactgcacaagcaaggggcgtgccctttatcatgacctcaatgcttacagagttctatttgatgagaatagtaatcctagaatatctacctttggcctgatgaaaaatagtagggacgggaagagttatagtacaaatctggcatttactcctcctgaatatcttagaactgggagagtgacaccagaaagtgtgatatacagctttggaactcttttacttgatcttctcagtggaaagcatattccccctagtcatgctctagaccttattcgagacaggaatcttcagatgctgacagattcttgcttggaaggacagctgtctcaagatgatggtactgaattgattccttctcatgttttgatgggtatcccgcacactaactcctgctctccagtttcaccacttggtgaagcctgctccagaagggatttgactgcaatccatgagatcctcgagaatatcggctataaagatgatggaatgacaaatgagttcattgatgttggaaacatggtttctcccacaatttttgcccggcgtagtttgtcttatctcatggatgagatgcctcaggaagctctaaatgatgcaatgcaagctcaagtaatttccccaatatggcacattgcatcttatcttcaggctgctgcgctttctgcactaggaatggagactgaggcacaatcagcactgaaggaaggtactatgcttgaagccaaaaggaacactgcagctggacacaagggaaatcaaggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

288

Amino Acids

31.79

Weight (kDa)

5.37

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	14 - 117	1.1e-10	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	24 - 121	4e-10	Protein kinase domain
TPR_BSK1_C	PF25575	173 - 200	1.7e-07	Serine/threonine-protein kinase BSK1-like, TPR repeats
TPR_BSK1_C	PF25575	200 - 251	9.6e-22	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01740 AT1G01740 AT4G00710 AT4G00710
fragaria_vesca	FvH4_7g14010 FvH4_7g14010 FvH4_7g14010 FvH4_7g14010 FvH4_7g14010
malus_domestica	MD01G1056600.v1.1
prunus_persica	Prupe.2G167300_v2.0.a1
pyrus_communis	pycom01g08210 pycom01g08290 pycom01g08460
rosa_chinensis	RchiOBHm_Chr1g0354661
rosa_laevigata	RLG00000028189
rosa_multiflora	Rmu_sc0003940.1_g000008 Rmu_sc0006632.1_g000013
rosa_roxburghii	Rroxscaffold_4G00300860
rosa_rugosa	Rorug01G0243700
rosa_samantha	Rh1AG255000 Rh1AG255800 Rh1DG253600
rosa_wichuraiana	Rw1G022310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	54
AciI	CCGC	1 cut(s)	479
AclWI	GGATC	1 cut(s)	550
AcuI	CTGAAG	4 cut(s)	47, 374, 731, 821
AdeI	CACNNNGTG	1 cut(s)	515
AfaI	GTAC	3 cut(s)	235, 442, 811
AfiI	CCNNNNNNNGG	2 cut(s)	54, 726
AgsI	TTSAA	1 cut(s)	821
AluBI	AGCT	5 cut(s)	306, 424, 686, 707, 842
AluI	AGCT	5 cut(s)	306, 424, 686, 707, 842
Alw26I	GTCTC	3 cut(s)	372, 432, 773
AlwI	GGATC	1 cut(s)	550
AlwNI	CAGNNNCTG	1 cut(s)	397
Ama87I	CYCGRG	1 cut(s)	560
AoxI	GGCC	1 cut(s)	196
ApeKI	GCWGC	3 cut(s)	752, 755, 839
Asp700I	GAANNNNTTC	1 cut(s)	450
AspLEI	GCGC	1 cut(s)	760
AsuC2I	CCSGG	1 cut(s)	643
AsuHPI	GGTGA	2 cut(s)	498, 527
AvaI	CYCGRG	1 cut(s)	560
AxyI	CCTNAGG	1 cut(s)	678
BaeGI	GKGCMC	1 cut(s)	127
BbvI	GCAGC	3 cut(s)	739, 742, 851
BccI	CCATC	3 cut(s)	431, 463, 578
BciVI	GTATCC	1 cut(s)	485
BcnI	CCSGG	1 cut(s)	643
BcoDI	GTCTC	3 cut(s)	372, 432, 773
BfaI	CTAG	5 cut(s)	98, 180, 354, 365, 770
BfmI	CTRYAG	1 cut(s)	837
BfuI	GTATCC	1 cut(s)	485
BisI	GCNGC	3 cut(s)	753, 756, 840
BlsI	GCNGC	3 cut(s)	754, 757, 841
Bme1390I	CCNGG	1 cut(s)	643
BmeT110I	CYCGRG	1 cut(s)	560
BmrFI	CCNGG	1 cut(s)	643
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	5 cut(s)	28, 384, 663, 685, 746
BmuI	ACTGGG	1 cut(s)	282
BoxI	GACNNNNGTC	1 cut(s)	424
BpmI	CTGGAG	2 cut(s)	483, 511
BpuEI	CTTGAG	2 cut(s)	414, 693
BpuMI	CCSGG	1 cut(s)	643
BsaBI	GATNNNNATC	1 cut(s)	473
BsaXI	ACNNNNNCTCC	2 cut(s)	473, 503
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 726
Bse1I	ACTGG	2 cut(s)	277, 500
Bse21I	CCTNAGG	1 cut(s)	678
Bse3DI	GCAATG	2 cut(s)	705, 732
Bse8I	GATNNNNATC	1 cut(s)	473
BseGI	GGATG	2 cut(s)	43, 673
BseJI	GATNNNNATC	1 cut(s)	473
BseLI	CCNNNNNNNGG	2 cut(s)	54, 726
BseMI	GCAATG	2 cut(s)	705, 732
BseMII	CTCAG	3 cut(s)	346, 692, 774
BseNI	ACTGG	2 cut(s)	277, 500
BseRI	GAGGAG	1 cut(s)	243
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	3 cut(s)	739, 742, 851
BsgI	GTGCAG	2 cut(s)	91, 750
BshFI	GGCC	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	560
BsiSI	CCGG	1 cut(s)	643
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	2 cut(s)	54, 726
BsmAI	GTCTC	3 cut(s)	372, 432, 773
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	198
BsoBI	CYCGRG	1 cut(s)	560
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	325, 555
BspACI	CCGC	1 cut(s)	479
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	3 cut(s)	345, 691, 775
BspHI	TCATGA	1 cut(s)	133
BspMAI	CTGCAG	1 cut(s)	841
BspPI	GGATC	1 cut(s)	550
BsrDI	GCAATG	2 cut(s)	705, 732
BsrI	ACTGG	2 cut(s)	277, 500
BssMI	GATC	2 cut(s)	325, 555
Bst6I	CTCTTC	1 cut(s)	218
BstC8I	GCNNGC	3 cut(s)	123, 523, 705
BstDEI	CTNAG	5 cut(s)	9, 266, 332, 678, 783
BstF5I	GGATG	2 cut(s)	43, 673
BstHHI	GCGC	1 cut(s)	760
BstKTI	GATC	2 cut(s)	328, 558
BstMAI	GTCTC	3 cut(s)	372, 432, 773
BstMBI	GATC	2 cut(s)	325, 555
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 704, 764, 794
BstPAI	GACNNNNGTC	1 cut(s)	424
BstSCI	CCNGG	1 cut(s)	641
BstSFI	CTRYAG	1 cut(s)	837
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	3 cut(s)	739, 742, 851
BstX2I	RGATCY	1 cut(s)	555
BstYI	RGATCY	1 cut(s)	555
Bsu36I	CCTNAGG	1 cut(s)	678
BsuI	GTATCC	1 cut(s)	485
BsuRI	GGCC	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	43, 673
BtsI	GCAGTG	1 cut(s)	834
BtsIMutI	CAGTG	4 cut(s)	23, 340, 797, 834
Cac8I	GCNNGC	3 cut(s)	123, 523, 705
CaiI	CAGNNNCTG	1 cut(s)	397
CciI	TCATGA	1 cut(s)	133
CfoI	GCGC	1 cut(s)	760
Csp6I	GTAC	3 cut(s)	234, 441, 810
CspCI	CAANNNNNGTGG	2 cut(s)	619, 654
CviAII	CATG	7 cut(s)	49, 134, 359, 461, 551, 619, 664
CviQI	GTAC	3 cut(s)	234, 441, 810
DdeI	CTNAG	5 cut(s)	9, 266, 332, 678, 783
DpnI	GATC	2 cut(s)	327, 557
DpnII	GATC	2 cut(s)	325, 555
DraIII	CACNNNGTG	1 cut(s)	515
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco57I	CTGAAG	4 cut(s)	47, 374, 731, 821
Eco81I	CCTNAGG	1 cut(s)	678
Eco88I	CYCGRG	1 cut(s)	560
FaeI	CATG	7 cut(s)	52, 137, 362, 464, 554, 622, 667
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	7 cut(s)	48, 133, 358, 460, 550, 618, 663
FauI	CCCGC	1 cut(s)	486
Fnu4HI	GCNGC	3 cut(s)	753, 756, 840
FokI	GGATG	2 cut(s)	50, 680
Fsp4HI	GCNGC	3 cut(s)	753, 756, 840
FspBI	CTAG	5 cut(s)	98, 180, 354, 365, 770
GlaI	GCGC	1 cut(s)	759
GluI	GCNGC	3 cut(s)	753, 756, 840
GsuI	CTGGAG	2 cut(s)	483, 511
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	1 cut(s)	643
HhaI	GCGC	1 cut(s)	760
Hin1II	CATG	7 cut(s)	52, 137, 362, 464, 554, 622, 667
Hin6I	GCGC	1 cut(s)	758
HinP1I	GCGC	1 cut(s)	758
HinfI	GANTC	3 cut(s)	385, 404, 451
HpaII	CCGG	1 cut(s)	643
HphI	GGTGA	2 cut(s)	498, 527
Hpy188I	TCNGA	1 cut(s)	393
Hpy188III	TCNNGA	8 cut(s)	134, 257, 365, 377, 431, 528, 562, 680
HpyAV	CCTTC	6 cut(s)	22, 410, 465, 525, 796, 800
HpyCH4V	TGCA	9 cut(s)	41, 89, 108, 545, 698, 703, 737, 767, 839
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 704, 764, 794
HpyF3I	CTNAG	5 cut(s)	9, 266, 332, 678, 783
Hsp92II	CATG	7 cut(s)	52, 137, 362, 464, 554, 622, 667
HspAI	GCGC	1 cut(s)	758
Kzo9I	GATC	2 cut(s)	325, 555
LmnI	GCTCC	1 cut(s)	530
Lsp1109I	GCAGC	3 cut(s)	739, 742, 851
LweI	GCATC	5 cut(s)	28, 384, 663, 685, 746
MaeI	CTAG	5 cut(s)	98, 180, 354, 365, 770
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	2 cut(s)	327, 557
MboI	GATC	2 cut(s)	325, 555
MboII	GAAGA	4 cut(s)	235, 320, 380, 737
MflI	RGATCY	1 cut(s)	555
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	3 cut(s)	446, 633, 714
MmeI	TCCRAC	1 cut(s)	592
MnlI	CCTC	8 cut(s)	4, 25, 63, 149, 264, 569, 687, 778
MroXI	GAANNNNTTC	1 cut(s)	450
MspA1I	CMGCKG	2 cut(s)	424, 842
MspI	CCGG	1 cut(s)	643
MspR9I	CCNGG	1 cut(s)	643
MwoI	GCNNNNNNNGC	4 cut(s)	20, 704, 764, 794
NciI	CCSGG	1 cut(s)	643
NdeII	GATC	2 cut(s)	325, 555
NlaIII	CATG	7 cut(s)	52, 137, 362, 464, 554, 622, 667
NmuCI	GTSAC	1 cut(s)	280
PaeR7I	CTCGAG	1 cut(s)	560
PagI	TCATGA	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	3 cut(s)	385, 404, 451
PflMI	CCANNNNNTGG	1 cut(s)	54
PkrI	GCNGC	3 cut(s)	754, 757, 841
PshAI	GACNNNNGTC	1 cut(s)	424
PstI	CTGCAG	1 cut(s)	841
PstNI	CAGNNNCTG	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	555
PvuII	CAGCTG	2 cut(s)	424, 842
RsaI	GTAC	3 cut(s)	235, 442, 811
RsaNI	GTAC	3 cut(s)	234, 441, 810
SatI	GCNGC	3 cut(s)	753, 756, 840
Sau3AI	GATC	2 cut(s)	325, 555
ScrFI	CCNGG	1 cut(s)	643
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	9 cut(s)	141, 194, 308, 372, 426, 688, 709, 811, 844
SfaNI	GCATC	5 cut(s)	28, 384, 663, 685, 746
SfcI	CTRYAG	1 cut(s)	837
Sfr274I	CTCGAG	1 cut(s)	560
SlaI	CTCGAG	1 cut(s)	560
SmlI	CTYRAG	3 cut(s)	429, 560, 708
SmoI	CTYRAG	3 cut(s)	429, 560, 708
Sse9I	AATT	3 cut(s)	446, 633, 714
SsiI	CCGC	1 cut(s)	479
SspMI	CTAG	5 cut(s)	98, 180, 354, 365, 770
StyD4I	CCNGG	1 cut(s)	641
TaqI	TCGA	2 cut(s)	376, 561
TasI	AATT	3 cut(s)	446, 633, 714
TatI	WGTACW	1 cut(s)	233
TfiI	GAWTC	3 cut(s)	385, 404, 451
TscAI	CASTG	4 cut(s)	30, 340, 804, 841
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	3 cut(s)	752, 755, 839
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	3 cut(s)	65, 218, 592
TspRI	CASTG	4 cut(s)	30, 340, 804, 841
Van91I	CCANNNNNTGG	1 cut(s)	54
XbaI	TCTAGA	1 cut(s)	364
XhoI	CTCGAG	1 cut(s)	560
XmnI	GAANNNNTTC	1 cut(s)	450
XspI	CTAG	5 cut(s)	98, 180, 354, 365, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.