Rmu_sc0004032.1_g000012

Enhancer of polycomb-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004032.1
OG0010506
Physical Location & Seq
Reverse (-)
28014 .. 30973
2960 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1245 bp
atgagtaggctctcattcaggcctcggcccctcgacatccacaagaggctccccgtcgtcaagtctttcaaggacttcgaagacgatgaagccgcccccacctccacccgcaattctcagctcctccgcctctccgccgtcgactcctcctccgcctccgccaccgaaatcgaggtccaccctccccccgccaagaagctagcccctgaaatcccgactcctcagtttgttgttgttgatacttatgagagagactactctcgcacttttgcccaacccaattcctatctccgcgccagaggagcccgggccgagctcggagagtttgtggagtatgatttggataatgaggatgaggattggcttgaagagttcaatggtgaggaggaaattcttcctgccgaaaagcttgagagtcttattttcaagctggaggttttggatcataaggctcgggagagagcaggagttataacccctactcttgcttcacctatccctgtacttctacaacttgatgttgctactgaggctctacatggtcagcccctcagatatgctgtcatccggtctgtttatgagtattggagagataagcgtgaaagatggcagaagcctatcttgcgacgtttgcaggttaggcgcaacctggaccaagccaagaccattgtggaggctttaatcaagagagaagaaaaaaagagagcagtcatggaggccgaagtggagcttcaagtaaatcaaatgaagtacaagcatgagacactgctcctggaagatagtttagtccttcctggttttccacccatgtcttccaagtttgtttcaagtgaggaggaaaatgttgattcagatgactttgaaaacagtcggcctcgtacacgaccttctgcactgcctaatccgcctttaccagaccccaacttgatcacgggaaccatgaagcaagatttcaggcgtcggcatgcacctcaagggtggcttcataaaatggatcccctcgagccagttttgttatttacaaaacccttagttccagagaagttggcagcttcaggcattgtaccaccatcagattcttcaacgaaaaatggagtaaccacagcaccttttaagttccgcggaagaattggccgagggggccgattaatatttgatagatggaacccattgatgcacactccaatcgactttgggaattcatattatatacctcctaaacctcgaccaacaacatataattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPL1

Protein Analysis

414

Amino Acids

47.43

Weight (kDa)

6.5

Isoelectric Point (pI)

63.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPL1 PF10513 44 - 145 1.7e-10 Enhancer of polycomb-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 473
Acc36I ACCTGC 1 cut(s) 625
AccI GTMKAC 1 cut(s) 141
AccII CGCG 2 cut(s) 294, 1122
AclWI GGATC 3 cut(s) 450, 989, 1002
AcoI YGGCCR 1 cut(s) 1132
AcsI RAATTY 2 cut(s) 390, 1198
AcuI CTGAAG 1 cut(s) 1038
AcyI GRCGYC 1 cut(s) 958
AfaI GTAC 4 cut(s) 504, 752, 880, 1065
AgsI TTSAA 8 cut(s) 70, 368, 376, 427, 734, 828, 863, 1083
AjnI CCWGG 3 cut(s) 648, 771, 793
AluBI AGCT 7 cut(s) 121, 199, 316, 409, 430, 730, 1052
AluI AGCT 7 cut(s) 121, 199, 316, 409, 430, 730, 1052
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 2 cut(s) 246, 755
AlwI GGATC 3 cut(s) 450, 989, 1002
Ama87I CYCGRG 3 cut(s) 306, 453, 1001
AoxI GGCC 7 cut(s) 20, 26, 309, 717, 872, 1132, 1141
ApeKI GCWGC 1 cut(s) 1049
ApoI RAATTY 2 cut(s) 390, 1198
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
AseI ATTAAT 1 cut(s) 1148
Asp700I GAANNNNTTC 1 cut(s) 393
AspLEI GCGC 2 cut(s) 296, 645
AspS9I GGNCC 5 cut(s) 27, 175, 309, 652, 1141
AsuC2I CCSGG 2 cut(s) 307, 308
AsuHPI GGTGA 2 cut(s) 392, 483
AsuII TTCGAA 1 cut(s) 78
AsuNHI GCTAGC 1 cut(s) 199
AvaI CYCGRG 3 cut(s) 306, 453, 1001
AvaII GGWCC 2 cut(s) 175, 652
BamHI GGATCC 1 cut(s) 994
BanII GRGCYC 2 cut(s) 307, 318
BarI GAAGNNNNNNTAC 2 cut(s) 871, 903
BbsI GAAGAC 2 cut(s) 87, 804
Bbv12I GWGCWC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 1061
BccI CCATC 3 cut(s) 600, 1078, 1155
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 3 cut(s) 650, 773, 795
BclI TGATCA 1 cut(s) 927
BcnI CCSGG 2 cut(s) 307, 308
BcoDI GTCTC 2 cut(s) 246, 755
BfaI CTAG 1 cut(s) 200
BfuAI ACCTGC 1 cut(s) 625
BglI GCCNNNNNGGC 1 cut(s) 1140
BisI GCNGC 2 cut(s) 93, 1050
BlsI GCNGC 2 cut(s) 94, 1051
Bme1390I CCNGG 5 cut(s) 307, 308, 650, 773, 795
Bme18I GGWCC 2 cut(s) 175, 652
BmeT110I CYCGRG 3 cut(s) 306, 453, 1001
BmgT120I GGNCC 5 cut(s) 27, 175, 309, 652, 1141
BmiI GGNNCC 7 cut(s) 29, 50, 304, 937, 996, 1142, 1166
BmrFI CCNGG 5 cut(s) 307, 308, 650, 773, 795
BmsI GCATC 1 cut(s) 1164
BmtI GCTAGC 1 cut(s) 203
BpiI GAAGAC 2 cut(s) 87, 804
BpmI CTGGAG 1 cut(s) 452
Bpu14I TTCGAA 1 cut(s) 78
BpuEI CTTGAG 2 cut(s) 431, 957
BpuMI CCSGG 2 cut(s) 307, 308
BsaHI GRCGYC 1 cut(s) 958
BsaJI CCNNGG 4 cut(s) 23, 306, 1120, 1135
BsaWI WCCGGW 1 cut(s) 567
BsaXI ACNNNNNCTCC 4 cut(s) 134, 164, 312, 342
Bse1I ACTGG 1 cut(s) 1007
BseBI CCWGG 3 cut(s) 650, 773, 795
BseDI CCNNGG 4 cut(s) 23, 306, 1120, 1135
BseGI GGATG 3 cut(s) 36, 358, 564
BseMII CTCAG 4 cut(s) 131, 236, 519, 565
BseNI ACTGG 1 cut(s) 1007
BseRI GAGGAG 7 cut(s) 113, 136, 139, 210, 315, 398, 848
BseXI GCAGC 1 cut(s) 1061
BsgI GTGCAG 1 cut(s) 876
Bsh1236I CGCG 2 cut(s) 294, 1122
BshFI GGCC 7 cut(s) 22, 28, 311, 719, 874, 1134, 1143
BsiHKAI GWGCWC 1 cut(s) 318
BsiHKCI CYCGRG 3 cut(s) 306, 453, 1001
BsiSI CCGG 2 cut(s) 307, 568
BsmAI GTCTC 2 cut(s) 246, 755
BsnI GGCC 7 cut(s) 22, 28, 311, 719, 874, 1134, 1143
BsoBI CYCGRG 3 cut(s) 306, 453, 1001
Bsp119I TTCGAA 1 cut(s) 78
Bsp1286I GDGCHC 2 cut(s) 307, 318
Bsp143I GATC 3 cut(s) 442, 927, 994
BspANI GGCC 7 cut(s) 22, 28, 311, 719, 874, 1134, 1143
BspCNI CTCAG 4 cut(s) 130, 235, 520, 564
BspFNI CGCG 2 cut(s) 294, 1122
BspLI GGNNCC 7 cut(s) 29, 50, 304, 937, 996, 1142, 1166
BspMI ACCTGC 1 cut(s) 625
BspOI GCTAGC 1 cut(s) 203
BspPI GGATC 3 cut(s) 450, 989, 1002
BspT104I TTCGAA 1 cut(s) 78
BsrI ACTGG 1 cut(s) 1007
BssECI CCNNGG 4 cut(s) 23, 306, 1120, 1135
BssMI GATC 3 cut(s) 442, 927, 994
BssNI GRCGYC 1 cut(s) 958
Bst2UI CCWGG 3 cut(s) 650, 773, 795
Bst4CI ACNGT 1 cut(s) 869
Bst6I CTCTTC 1 cut(s) 363
BstACI GRCGYC 1 cut(s) 958
BstBI TTCGAA 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 201, 966
BstDEI CTNAG 5 cut(s) 117, 222, 528, 551, 1030
BstDSI CCRYGG 1 cut(s) 1120
BstF5I GGATG 3 cut(s) 36, 358, 564
BstFNI CGCG 2 cut(s) 294, 1122
BstHHI GCGC 2 cut(s) 296, 645
BstKTI GATC 3 cut(s) 445, 930, 997
BstMAI GTCTC 2 cut(s) 246, 755
BstMBI GATC 3 cut(s) 442, 927, 994
BstMWI GCNNNNNNNGC 7 cut(s) 302, 530, 622, 631, 640, 904, 1140
BstNI CCWGG 3 cut(s) 650, 773, 795
BstNSI RCATGY 1 cut(s) 968
BstSCI CCNGG 5 cut(s) 305, 306, 648, 771, 793
BstUI CGCG 2 cut(s) 294, 1122
BstV1I GCAGC 1 cut(s) 1061
BstV2I GAAGAC 2 cut(s) 87, 804
BstX2I RGATCY 1 cut(s) 994
BstYI RGATCY 1 cut(s) 994
BsuRI GGCC 7 cut(s) 22, 28, 311, 719, 874, 1134, 1143
BtgI CCRYGG 1 cut(s) 1120
BtsCI GGATG 3 cut(s) 36, 358, 564
BtsI GCAGTG 2 cut(s) 764, 893
BtsIMutI CAGTG 2 cut(s) 764, 893
BveI ACCTGC 1 cut(s) 625
Cac8I GCNNGC 2 cut(s) 201, 966
CfoI GCGC 2 cut(s) 296, 645
Cfr13I GGNCC 5 cut(s) 27, 175, 309, 652, 1141
Cfr42I CCGCGG 1 cut(s) 1123
Cfr9I CCCGGG 1 cut(s) 306
CseI GACGC 1 cut(s) 947
Csp6I GTAC 4 cut(s) 503, 751, 879, 1064
CviAII CATG 6 cut(s) 539, 712, 758, 808, 940, 965
CviQI GTAC 4 cut(s) 503, 751, 879, 1064
DdeI CTNAG 5 cut(s) 117, 222, 528, 551, 1030
DpnI GATC 3 cut(s) 444, 929, 996
DpnII GATC 3 cut(s) 442, 927, 994
EaeI YGGCCR 1 cut(s) 1132
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
EciI GGCGGA 5 cut(s) 116, 124, 142, 148, 894
Ecl136II GAGCTC 1 cut(s) 316
Eco147I AGGCCT 1 cut(s) 22
Eco24I GRGCYC 2 cut(s) 307, 318
Eco47I GGWCC 2 cut(s) 175, 652
Eco53kI GAGCTC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 1038
Eco88I CYCGRG 3 cut(s) 306, 453, 1001
EcoICRI GAGCTC 1 cut(s) 316
EcoRI GAATTC 1 cut(s) 1198
EcoRII CCWGG 3 cut(s) 648, 771, 793
EcoT38I GRGCYC 2 cut(s) 307, 318
FaeI CATG 6 cut(s) 542, 715, 761, 811, 943, 968
FalI AAGNNNNNCTT 6 cut(s) 605, 637, 714, 746, 966, 998
FatI CATG 6 cut(s) 538, 711, 757, 807, 939, 964
FauI CCCGC 2 cut(s) 116, 196
FbaI TGATCA 1 cut(s) 927
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 93, 1050
FokI GGATG 3 cut(s) 23, 365, 551
FriOI GRGCYC 2 cut(s) 307, 318
Fsp4HI GCNGC 2 cut(s) 93, 1050
FspBI CTAG 1 cut(s) 200
GlaI GCGC 2 cut(s) 295, 644
GluI GCNGC 2 cut(s) 93, 1050
GsuI CTGGAG 1 cut(s) 452
HaeIII GGCC 7 cut(s) 22, 28, 311, 719, 874, 1134, 1143
HapII CCGG 2 cut(s) 307, 568
HgaI GACGC 1 cut(s) 947
HhaI GCGC 2 cut(s) 296, 645
Hin1I GRCGYC 1 cut(s) 958
Hin1II CATG 6 cut(s) 542, 715, 761, 811, 943, 968
Hin6I GCGC 2 cut(s) 294, 643
HinP1I GCGC 2 cut(s) 294, 643
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 5 cut(s) 143, 217, 415, 848, 1076
HpaII CCGG 2 cut(s) 307, 568
HphI GGTGA 2 cut(s) 392, 483
Hpy166II GTNNAC 3 cut(s) 142, 178, 881
Hpy188I TCNGA 4 cut(s) 320, 554, 853, 1075
Hpy188III TCNNGA 4 cut(s) 214, 455, 685, 1037
Hpy8I GTNNAC 3 cut(s) 142, 178, 881
Hpy99I CGWCG 4 cut(s) 59, 143, 630, 963
HpyAV CCTTC 2 cut(s) 800, 897
HpyCH4III ACNGT 1 cut(s) 869
HpyCH4IV ACGT 1 cut(s) 628
HpyCH4V TGCA 4 cut(s) 634, 893, 968, 1177
HpyF10VI GCNNNNNNNGC 7 cut(s) 302, 530, 622, 631, 640, 904, 1140
HpyF3I CTNAG 5 cut(s) 117, 222, 528, 551, 1030
HpySE526I ACGT 1 cut(s) 628
Hsp92I GRCGYC 1 cut(s) 958
Hsp92II CATG 6 cut(s) 542, 715, 761, 811, 943, 968
HspAI GCGC 2 cut(s) 294, 643
Ksp22I TGATCA 1 cut(s) 927
KspI CCGCGG 1 cut(s) 1123
Kzo9I GATC 3 cut(s) 442, 927, 994
LmnI GCTCC 5 cut(s) 54, 126, 302, 727, 774
Lsp1109I GCAGC 1 cut(s) 1061
LweI GCATC 1 cut(s) 1164
MaeI CTAG 1 cut(s) 200
MaeII ACGT 1 cut(s) 628
MaeIII GTNAC 1 cut(s) 1096
MalI GATC 3 cut(s) 444, 929, 996
MboI GATC 3 cut(s) 442, 927, 994
MboII GAAGA 8 cut(s) 92, 380, 386, 704, 788, 804, 1071, 1137
MflI RGATCY 1 cut(s) 994
MhlI GDGCHC 2 cut(s) 307, 318
MluCI AATT 6 cut(s) 112, 280, 390, 1128, 1198, 1240
MlyI GAGTC 3 cut(s) 137, 211, 424
MroXI GAANNNNTTC 1 cut(s) 393
MseI TTAA 3 cut(s) 680, 1113, 1148
MspA1I CMGCKG 1 cut(s) 1122
MspI CCGG 2 cut(s) 307, 568
MspR9I CCNGG 5 cut(s) 307, 308, 650, 773, 795
MvaI CCWGG 3 cut(s) 650, 773, 795
MvnI CGCG 2 cut(s) 294, 1122
MwoI GCNNNNNNNGC 7 cut(s) 302, 530, 622, 631, 640, 904, 1140
NciI CCSGG 2 cut(s) 307, 308
NdeII GATC 3 cut(s) 442, 927, 994
NheI GCTAGC 1 cut(s) 199
NlaIII CATG 6 cut(s) 542, 715, 761, 811, 943, 968
NlaIV GGNNCC 7 cut(s) 29, 50, 304, 937, 996, 1142, 1166
NmeAIII GCCGAG 3 cut(s) 4, 337, 1160
NspI RCATGY 1 cut(s) 968
NspV TTCGAA 1 cut(s) 78
PaeI GCATGC 1 cut(s) 968
PaeR7I CTCGAG 1 cut(s) 1001
PceI AGGCCT 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 2 cut(s) 848, 1076
PfoI TCCNGGA 1 cut(s) 771
PkrI GCNGC 2 cut(s) 94, 1051
PleI GAGTC 3 cut(s) 137, 211, 423
PpsI GAGTC 3 cut(s) 137, 211, 423
PshBI ATTAAT 1 cut(s) 1148
PsiI TTATAA 1 cut(s) 473
Psp124BI GAGCTC 1 cut(s) 318
Psp6I CCWGG 3 cut(s) 648, 771, 793
PspGI CCWGG 3 cut(s) 648, 771, 793
PspN4I GGNNCC 7 cut(s) 29, 50, 304, 937, 996, 1142, 1166
PspPI GGNCC 5 cut(s) 27, 175, 309, 652, 1141
PspXI VCTCGAGB 1 cut(s) 1001
PsuI RGATCY 1 cut(s) 994
RsaI GTAC 4 cut(s) 504, 752, 880, 1065
RsaNI GTAC 4 cut(s) 503, 751, 879, 1064
SacI GAGCTC 1 cut(s) 318
SacII CCGCGG 1 cut(s) 1123
SalI GTCGAC 1 cut(s) 140
SaqAI TTAA 3 cut(s) 680, 1113, 1148
SatI GCNGC 2 cut(s) 93, 1050
Sau3AI GATC 3 cut(s) 442, 927, 994
Sau96I GGNCC 5 cut(s) 27, 175, 309, 652, 1141
SchI GAGTC 3 cut(s) 137, 211, 424
ScrFI CCNGG 5 cut(s) 307, 308, 650, 773, 795
SduI GDGCHC 2 cut(s) 307, 318
SfaNI GCATC 1 cut(s) 1164
SfiI GGCCNNNNNGGCC 1 cut(s) 1140
Sfr274I CTCGAG 1 cut(s) 1001
Sfr303I CCGCGG 1 cut(s) 1123
SfuI TTCGAA 1 cut(s) 78
SgrBI CCGCGG 1 cut(s) 1123
SinI GGWCC 2 cut(s) 175, 652
SlaI CTCGAG 1 cut(s) 1001
SmaI CCCGGG 1 cut(s) 308
SmlI CTYRAG 3 cut(s) 410, 972, 1001
SmoI CTYRAG 3 cut(s) 410, 972, 1001
SphI GCATGC 1 cut(s) 968
SrfI GCCCGGGC 1 cut(s) 308
Sse9I AATT 6 cut(s) 112, 280, 390, 1128, 1198, 1240
SseBI AGGCCT 1 cut(s) 22
SspI AATATT 1 cut(s) 1152
SspMI CTAG 1 cut(s) 200
SstI GAGCTC 1 cut(s) 318
StuI AGGCCT 1 cut(s) 22
StyD4I CCNGG 5 cut(s) 305, 306, 648, 771, 793
TaaI ACNGT 1 cut(s) 869
TaiI ACGT 1 cut(s) 631
TaqI TCGA 7 cut(s) 33, 78, 141, 171, 1002, 1188, 1225
TasI AATT 6 cut(s) 112, 280, 390, 1128, 1198, 1240
TatI WGTACW 2 cut(s) 502, 750
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 2 cut(s) 848, 1076
Tru1I TTAA 3 cut(s) 680, 1113, 1148
Tru9I TTAA 3 cut(s) 680, 1113, 1148
TscAI CASTG 2 cut(s) 771, 900
TseI GCWGC 1 cut(s) 1049
TspDTI ATGAA 5 cut(s) 102, 761, 956, 974, 1191
TspMI CCCGGG 1 cut(s) 306
TspRI CASTG 2 cut(s) 771, 900
VpaK11BI GGWCC 2 cut(s) 175, 652
VspI ATTAAT 1 cut(s) 1148
XapI RAATTY 2 cut(s) 390, 1198
XceI RCATGY 1 cut(s) 968
XcmI CCANNNNNNNNNTGG 1 cut(s) 667
XhoI CTCGAG 1 cut(s) 1001
XmaI CCCGGG 1 cut(s) 306
XmiI GTMKAC 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.