Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004057.1

Orthogroup ID

OG0010025

Physical Location & Seq

Genomic Coordinates Forward (+)

28230 .. 30093

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgggaactccaagtaaagatcttctgcaattggagcacaacaagtcctcaatttcaccgctggaatccacactacttgtttgtaaaaatgaatcccagcctgcccagacaaagaagcccatcattactcctcctcccaaaagccagttgttgggaaaaatgaggaacttcttgggagtcatgtcagaagctaatgaaaaattgcagcttgatgcgaaggataatccagaaaaatatgacatcgaagcactcaccggagatgagtctcaagtcgttagtgtggaatgtatgttaggtgttgttgatcttcaaactcctgaggctgtggctgcagcagaagctgcagtttctggttatcagcctgtgatacctgtggaggatagcagtagtggagaggaatcagatgatagtagcagtgatgatgaagaagaaactagtgatgacaatgaagatgatgaaagcattgaggataagaaaacatcctctccagacaaaattaattctttgagtgaagaatttaataataagcggcccaaaaggcggcctaaaattgttgagctttcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4598

Protein Analysis

188

Amino Acids

20.52

Weight (kDa)

4.33

Isoelectric Point (pI)

76.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NOPCHAP1	PF15370	50 - 187	4.1e-12	NOP protein chaperone 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71430
fragaria_vesca	FvH4_2g02960 FvH4_2g02960
malus_domestica	MD05G1109000.v1.1 MD10G1112800.v1.1
prunus_persica	Prupe.8G152600_v2.0.a1
pyrus_communis	pycom05g10480 pycom10g09760
rosa_chinensis	RchiOBHm_Chr6g0247751
rosa_laevigata	RLG00000015182
rosa_multiflora	Rmu_sc0004057.1_g000006 Rmu_sc0009569.1_g000003
rosa_roxburghii	Rroxscaffold_180G00433270 Rroxscaffold_7G00213690
rosa_rugosa	Rorug05G0528300
rosa_samantha	Rh6AG043400 Rh6BG038000 Rh6CG036800 Rh6DG033800
rosa_wichuraiana	Rw6G003730 Rw6G003760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	151
AciI	CCGC	3 cut(s)	59, 529, 541
AcsI	RAATTY	1 cut(s)	515
AfiI	CCNNNNNNNGG	2 cut(s)	151, 540
AgsI	TTSAA	1 cut(s)	311
AhlI	ACTAGT	1 cut(s)	434
AluBI	AGCT	4 cut(s)	191, 208, 341, 559
AluI	AGCT	4 cut(s)	191, 208, 341, 559
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	270
AlwNI	CAGNNNCTG	2 cut(s)	341, 350
AoxI	GGCC	2 cut(s)	530, 542
ApeKI	GCWGC	4 cut(s)	205, 329, 332, 341
ApoI	RAATTY	1 cut(s)	515
AseI	ATTAAT	1 cut(s)	498
AspS9I	GGNCC	1 cut(s)	531
AsuHPI	GGTGA	2 cut(s)	48, 244
AxyI	CCTNAGG	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	4 cut(s)	217, 316, 328, 344
BccI	CCATC	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	270
BcuI	ACTAGT	1 cut(s)	434
BfaI	CTAG	1 cut(s)	435
BfmI	CTRYAG	2 cut(s)	330, 342
BglI	GCCNNNNNGGC	1 cut(s)	538
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	6 cut(s)	206, 330, 333, 342, 530, 542
BlsI	GCNGC	6 cut(s)	207, 331, 334, 343, 531, 543
BmgT120I	GGNCC	1 cut(s)	531
BmsI	GCATC	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	254
BsaXI	ACNNNNNCTCC	4 cut(s)	118, 148, 469, 499
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 540
Bse1I	ACTGG	1 cut(s)	145
Bse21I	CCTNAGG	1 cut(s)	318
BseGI	GGATG	1 cut(s)	479
BseLI	CCNNNNNNNGG	2 cut(s)	151, 540
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	2 cut(s)	120, 123
BseXI	GCAGC	4 cut(s)	217, 316, 328, 344
BseYI	CCCAGC	1 cut(s)	96
BshFI	GGCC	2 cut(s)	532, 544
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	151, 540
BsmAI	GTCTC	1 cut(s)	270
BsnI	GGCC	2 cut(s)	532, 544
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	19, 304
BspACI	CCGC	3 cut(s)	59, 529, 541
BspANI	GGCC	2 cut(s)	532, 544
BspCNI	CTCAG	1 cut(s)	310
BspMAI	CTGCAG	2 cut(s)	334, 346
BsrI	ACTGG	1 cut(s)	145
BssMI	GATC	2 cut(s)	19, 304
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	479
BstKTI	GATC	2 cut(s)	22, 307
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	2 cut(s)	19, 304
BstMWI	GCNNNNNNNGC	5 cut(s)	34, 329, 338, 341, 538
BstSFI	CTRYAG	2 cut(s)	330, 342
BstV1I	GCAGC	4 cut(s)	217, 316, 328, 344
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
Bsu36I	CCTNAGG	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	532, 544
BtsCI	GGATG	1 cut(s)	479
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	421
Cac8I	GCNNGC	1 cut(s)	102
CaiI	CAGNNNCTG	2 cut(s)	341, 350
Cfr13I	GGNCC	1 cut(s)	531
CspCI	CAANNNNNGTGG	2 cut(s)	58, 93
CviAII	CATG	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	2 cut(s)	21, 306
DpnII	GATC	2 cut(s)	19, 304
Eco81I	CCTNAGG	1 cut(s)	318
FaeI	CATG	1 cut(s)	184
FaiI	YATR	4 cut(s)	182, 237, 290, 565
FatI	CATG	1 cut(s)	180
Fnu4HI	GCNGC	6 cut(s)	206, 330, 333, 342, 530, 542
FokI	GGATG	1 cut(s)	466
Fsp4HI	GCNGC	6 cut(s)	206, 330, 333, 342, 530, 542
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	6 cut(s)	206, 330, 333, 342, 530, 542
GsaI	CCCAGC	1 cut(s)	100
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	532, 544
HapII	CCGG	1 cut(s)	255
Hin1II	CATG	1 cut(s)	184
HinfI	GANTC	5 cut(s)	65, 92, 177, 263, 398
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	2 cut(s)	48, 244
Hpy188I	TCNGA	2 cut(s)	187, 403
Hpy188III	TCNNGA	3 cut(s)	227, 317, 488
HpyAV	CCTTC	1 cut(s)	211
HpyCH4V	TGCA	4 cut(s)	28, 205, 332, 344
HpyF10VI	GCNNNNNNNGC	5 cut(s)	34, 329, 338, 341, 538
HpyF3I	CTNAG	1 cut(s)	318
Hsp92II	CATG	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	19, 304
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	4 cut(s)	217, 316, 328, 344
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	1 cut(s)	435
MalI	GATC	2 cut(s)	21, 306
MboI	GATC	2 cut(s)	19, 304
MboII	GAAGA	6 cut(s)	14, 299, 437, 440, 461, 524
MfeI	CAATTG	1 cut(s)	29
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	7 cut(s)	29, 51, 200, 495, 499, 515, 549
MlyI	GAGTC	2 cut(s)	186, 272
MnlI	CCTC	9 cut(s)	58, 141, 144, 156, 313, 370, 388, 460, 493
MseI	TTAA	2 cut(s)	498, 519
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	1 cut(s)	255
MunI	CAATTG	1 cut(s)	29
MwoI	GCNNNNNNNGC	5 cut(s)	34, 329, 338, 341, 538
NdeII	GATC	2 cut(s)	19, 304
NlaIII	CATG	1 cut(s)	184
PfeI	GAWTC	3 cut(s)	65, 92, 398
PflMI	CCANNNNNTGG	1 cut(s)	151
PkrI	GCNGC	6 cut(s)	207, 331, 334, 343, 531, 543
PleI	GAGTC	2 cut(s)	185, 271
PpsI	GAGTC	2 cut(s)	185, 271
PshBI	ATTAAT	1 cut(s)	498
PspFI	CCCAGC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	531
PstI	CTGCAG	2 cut(s)	334, 346
PstNI	CAGNNNCTG	2 cut(s)	341, 350
PsuI	RGATCY	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	498, 519
SatI	GCNGC	6 cut(s)	206, 330, 333, 342, 530, 542
Sau3AI	GATC	2 cut(s)	19, 304
Sau96I	GGNCC	1 cut(s)	531
SchI	GAGTC	2 cut(s)	186, 272
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	6 cut(s)	193, 210, 298, 343, 373, 561
SfaNI	GCATC	1 cut(s)	202
SfcI	CTRYAG	2 cut(s)	330, 342
SmlI	CTYRAG	1 cut(s)	267
SmoI	CTYRAG	1 cut(s)	267
SpeI	ACTAGT	1 cut(s)	434
Sse9I	AATT	7 cut(s)	29, 51, 200, 495, 499, 515, 549
SsiI	CCGC	3 cut(s)	59, 529, 541
SspMI	CTAG	1 cut(s)	435
TaqI	TCGA	1 cut(s)	243
TasI	AATT	7 cut(s)	29, 51, 200, 495, 499, 515, 549
TauI	GCSGC	2 cut(s)	532, 544
TfiI	GAWTC	3 cut(s)	65, 92, 398
Tru1I	TTAA	2 cut(s)	498, 519
Tru9I	TTAA	2 cut(s)	498, 519
TscAI	CASTG	1 cut(s)	421
TseI	GCWGC	4 cut(s)	205, 329, 332, 341
TspDTI	ATGAA	6 cut(s)	105, 210, 438, 462, 471, 552
TspRI	CASTG	1 cut(s)	421
Van91I	CCANNNNNTGG	1 cut(s)	151
VspI	ATTAAT	1 cut(s)	498
XapI	RAATTY	1 cut(s)	515
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.