Rmu_sc0004064.1_g000007

B3 domain-containing protein Os01g0234100-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004064.1
OG0017257
Physical Location & Seq
Forward (+)
30688 .. 31407
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004064.1_g000007.1.cds

Sequence Viewer

Length: 720 bp
atggcatccgttactacatgtagtattccaacaatatctgatatttctgaagatatattgtacattgacaattatgtcggaagtacagagagtgaagaagaagatatgttcaattatattgacaattatgaagccggtgcagagagtgaagatgatattgaccctgaatttttcaaaggagctgggctttcggagtcttctgtcacttgttttaaagaagtgacatgcatcgagaagttcaagatcatattcaatggctgtaacatcaattcccaggttcctaaactcgtcctgaagaaatattatgagctttgccgcagccaaaactcatacctgcatgaaaatcttgtggagtctcttaacagccaactggttgctggactaatctctgaggcggtcaatattgcagatgcaattaaattctgcgagattaccaccgaggagtctgagttttcgacgtgggacaagaccttgcaagcctctgagatgttaggcatgaatgtgggcttcatgcgcagccgagcgagcaagcttgcaagccttgcggcagaatcaaagacgtacaaagacgcgagacttgcaagagagcaagaagaagcagagtttcgggtcaggttggctgactttttgaaagaaaaagataaagcagatcgggaggggtctgagaaatcagtgcaggttgctacaagtttcaaacaagtgacaaatgtaccttggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

239

Amino Acids

26.86

Weight (kDa)

4.52

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017257)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g41030 FvH4_2g41030
rosa_chinensis RchiOBHm_Chr6g0299531
rosa_laevigata RLG00000011418
rosa_multiflora Rmu_sc0004064.1_g000007
rosa_roxburghii Rroxscaffold_7G00168580
rosa_samantha Rh6AG400900 Rh6AG401000 Rh6BG409500 Rh6CG414900 Rh6DG402000 Rh6DG402100
rosa_wichuraiana Rw6G035090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
Acc16I TGCGCA 1 cut(s) 515
Acc36I ACCTGC 2 cut(s) 342, 667
AccII CGCG 1 cut(s) 572
AciI CCGC 3 cut(s) 316, 395, 545
AcsI RAATTY 2 cut(s) 167, 419
AcuI CTGAAG 2 cut(s) 69, 314
AfaI GTAC 4 cut(s) 62, 85, 563, 711
AflIII ACRYGT 1 cut(s) 17
AgsI TTSAA 6 cut(s) 112, 175, 241, 253, 631, 694
AjiI CACGTC 1 cut(s) 459
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 3 cut(s) 182, 310, 532
AluI AGCT 3 cut(s) 182, 310, 532
Alw26I GTCTC 2 cut(s) 360, 568
ApeKI GCWGC 2 cut(s) 318, 516
ApoI RAATTY 2 cut(s) 167, 419
AspLEI GCGC 1 cut(s) 516
BaeI ACNNNNGTAYC 1 cut(s) 693
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 330, 528
BciT130I CCWGG 1 cut(s) 275
BcoDI GTCTC 2 cut(s) 360, 568
BfuAI ACCTGC 2 cut(s) 342, 667
BisI GCNGC 4 cut(s) 316, 319, 517, 546
BlsI GCNGC 4 cut(s) 317, 320, 518, 547
Bme1390I CCNGG 1 cut(s) 275
BmgBI CACGTC 1 cut(s) 459
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 275
BmsI GCATC 3 cut(s) 14, 237, 400
BpiI GAAGAC 1 cut(s) 189
BsaJI CCNNGG 3 cut(s) 273, 438, 713
BsaXI ACNNNNNCTCC 2 cut(s) 434, 464
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 375
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 3 cut(s) 273, 438, 713
BseGI GGATG 1 cut(s) 5
BseMII CTCAG 4 cut(s) 381, 438, 474, 654
BseNI ACTGG 1 cut(s) 375
BseRI GAGGAG 1 cut(s) 455
BseXI GCAGC 2 cut(s) 330, 528
BseYI CCCAGC 1 cut(s) 182
BsgI GTGCAG 2 cut(s) 159, 695
Bsh1236I CGCG 1 cut(s) 572
BsiSI CCGG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 476
BsmAI GTCTC 2 cut(s) 360, 568
BsmFI GGGAC 1 cut(s) 476
Bsp1407I TGTACA 1 cut(s) 60
Bsp143I GATC 2 cut(s) 243, 649
BspACI CCGC 3 cut(s) 316, 395, 545
BspCNI CTCAG 4 cut(s) 382, 439, 475, 655
BspFNI CGCG 1 cut(s) 572
BspLI GGNNCC 1 cut(s) 279
BspMI ACCTGC 2 cut(s) 342, 667
BsrFI RCCGGY 1 cut(s) 134
BsrGI TGTACA 1 cut(s) 60
BsrI ACTGG 1 cut(s) 375
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 3 cut(s) 273, 438, 713
BssMI GATC 2 cut(s) 243, 649
BssT1I CCWWGG 1 cut(s) 713
Bst2UI CCWGG 1 cut(s) 275
BstAPI GCANNNNNTGC 1 cut(s) 542
BstAUI TGTACA 1 cut(s) 60
BstC8I GCNNGC 5 cut(s) 477, 526, 530, 534, 538
BstDEI CTNAG 4 cut(s) 390, 447, 483, 663
BstF5I GGATG 1 cut(s) 5
BstFNI CGCG 1 cut(s) 572
BstHHI GCGC 1 cut(s) 516
BstKTI GATC 2 cut(s) 246, 652
BstMAI GTCTC 2 cut(s) 360, 568
BstMBI GATC 2 cut(s) 243, 649
BstMWI GCNNNNNNNGC 4 cut(s) 513, 525, 542, 578
BstNI CCWGG 1 cut(s) 275
BstNSI RCATGY 2 cut(s) 21, 228
BstSCI CCNGG 1 cut(s) 273
BstUI CGCG 1 cut(s) 572
BstV1I GCAGC 2 cut(s) 330, 528
BstV2I GAAGAC 1 cut(s) 189
BtrI CACGTC 1 cut(s) 459
BtsCI GGATG 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 678
BveI ACCTGC 2 cut(s) 342, 667
Cac8I GCNNGC 5 cut(s) 477, 526, 530, 534, 538
CfoI GCGC 1 cut(s) 516
Cfr10I RCCGGY 1 cut(s) 134
CseI GACGC 1 cut(s) 578
Csp6I GTAC 4 cut(s) 61, 84, 562, 710
CviAII CATG 5 cut(s) 18, 225, 338, 496, 511
CviQI GTAC 4 cut(s) 61, 84, 562, 710
DdeI CTNAG 4 cut(s) 390, 447, 483, 663
DpnI GATC 2 cut(s) 245, 651
DpnII GATC 2 cut(s) 243, 649
DraI TTTAAA 1 cut(s) 214
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 713
Eco57I CTGAAG 2 cut(s) 69, 314
EcoRII CCWGG 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 713
EcoT22I ATGCAT 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 713
FaeI CATG 5 cut(s) 21, 228, 341, 499, 514
FaqI GGGAC 1 cut(s) 476
FatI CATG 5 cut(s) 17, 224, 337, 495, 510
Fnu4HI GCNGC 4 cut(s) 316, 319, 517, 546
Fsp4HI GCNGC 4 cut(s) 316, 319, 517, 546
FspI TGCGCA 1 cut(s) 515
GlaI GCGC 1 cut(s) 515
GluI GCNGC 4 cut(s) 316, 319, 517, 546
GsaI CCCAGC 1 cut(s) 186
HapII CCGG 1 cut(s) 135
HgaI GACGC 1 cut(s) 578
HhaI GCGC 1 cut(s) 516
Hin1II CATG 5 cut(s) 21, 228, 341, 499, 514
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 4 cut(s) 194, 353, 443, 551
HpaII CCGG 1 cut(s) 135
Hpy188I TCNGA 8 cut(s) 40, 49, 80, 193, 391, 448, 484, 664
Hpy188III TCNNGA 4 cut(s) 232, 241, 292, 653
Hpy99I CGWCG 1 cut(s) 460
HpyCH4IV ACGT 2 cut(s) 458, 560
HpyCH4V TGCA 9 cut(s) 140, 228, 337, 407, 413, 475, 536, 581, 676
HpyF10VI GCNNNNNNNGC 4 cut(s) 513, 525, 542, 578
HpyF3I CTNAG 4 cut(s) 390, 447, 483, 663
HpySE526I ACGT 2 cut(s) 458, 560
Hsp92II CATG 5 cut(s) 21, 228, 341, 499, 514
HspAI GCGC 1 cut(s) 514
Kzo9I GATC 2 cut(s) 243, 649
LmnI GCTCC 1 cut(s) 179
Lsp1109I GCAGC 2 cut(s) 330, 528
LweI GCATC 3 cut(s) 14, 237, 400
MaeII ACGT 2 cut(s) 458, 560
MaeIII GTNAC 5 cut(s) 10, 202, 220, 260, 700
MalI GATC 2 cut(s) 245, 651
MboI GATC 2 cut(s) 243, 649
MboII GAAGA 8 cut(s) 62, 107, 110, 113, 161, 189, 307, 605
MluCI AATT 7 cut(s) 70, 112, 124, 167, 268, 414, 419
MlyI GAGTC 3 cut(s) 203, 362, 452
MmeI TCCRAC 2 cut(s) 53, 58
MnlI CCTC 4 cut(s) 385, 433, 490, 649
Mph1103I ATGCAT 1 cut(s) 230
MseI TTAA 3 cut(s) 213, 360, 417
MslI CAYNNNNRTG 1 cut(s) 500
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 275
MvaI CCWGG 1 cut(s) 275
MvnI CGCG 1 cut(s) 572
MwoI GCNNNNNNNGC 4 cut(s) 513, 525, 542, 578
NdeII GATC 2 cut(s) 243, 649
NlaIII CATG 5 cut(s) 21, 228, 341, 499, 514
NlaIV GGNNCC 1 cut(s) 279
NmeAIII GCCGAG 1 cut(s) 545
NmuCI GTSAC 3 cut(s) 202, 220, 700
NsbI TGCGCA 1 cut(s) 515
NsiI ATGCAT 1 cut(s) 230
NspI RCATGY 2 cut(s) 21, 228
PciI ACATGT 1 cut(s) 17
PfeI GAWTC 1 cut(s) 551
PkrI GCNGC 4 cut(s) 317, 320, 518, 547
PleI GAGTC 3 cut(s) 202, 361, 451
PpsI GAGTC 3 cut(s) 202, 361, 451
PscI ACATGT 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 273
PspFI CCCAGC 1 cut(s) 182
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 279
RsaI GTAC 4 cut(s) 62, 85, 563, 711
RsaNI GTAC 4 cut(s) 61, 84, 562, 710
RseI CAYNNNNRTG 1 cut(s) 500
SaqAI TTAA 3 cut(s) 213, 360, 417
SatI GCNGC 4 cut(s) 316, 319, 517, 546
Sau3AI GATC 2 cut(s) 243, 649
SchI GAGTC 3 cut(s) 203, 362, 452
ScrFI CCNGG 1 cut(s) 275
SfaNI GCATC 3 cut(s) 14, 237, 400
SmiMI CAYNNNNRTG 1 cut(s) 500
Sse9I AATT 7 cut(s) 70, 112, 124, 167, 268, 414, 419
SsiI CCGC 3 cut(s) 316, 395, 545
SspI AATATT 2 cut(s) 302, 403
StyD4I CCNGG 1 cut(s) 273
StyI CCWWGG 1 cut(s) 713
TaiI ACGT 2 cut(s) 461, 563
TaqI TCGA 2 cut(s) 231, 455
TasI AATT 7 cut(s) 70, 112, 124, 167, 268, 414, 419
TatI WGTACW 2 cut(s) 60, 83
TauI GCSGC 2 cut(s) 318, 548
TfiI GAWTC 1 cut(s) 551
Tru1I TTAA 3 cut(s) 213, 360, 417
Tru9I TTAA 3 cut(s) 213, 360, 417
TscAI CASTG 1 cut(s) 678
TseFI GTSAC 3 cut(s) 202, 220, 700
TseI GCWGC 2 cut(s) 318, 516
Tsp45I GTSAC 3 cut(s) 202, 220, 700
TspDTI ATGAA 4 cut(s) 144, 354, 499, 512
TspRI CASTG 1 cut(s) 678
XapI RAATTY 2 cut(s) 167, 419
XceI RCATGY 2 cut(s) 21, 228
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
Zsp2I ATGCAT 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.