Rh6DG402000

B3 domain-containing protein Os01g0234100-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0017257
Physical Location & Seq
Forward (+)
59076586 .. 59077855
1270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG402000.1

Sequence Viewer

Length: 483 bp
ATGGCAAAACAGAGCTCCAAGGCTAAGAAGATCGCTAAGAGGGAAAGACCTTCAAATAAACAAGAGAAACAGATACTTGAAAACAATGTGGCCTGTGGTAATTCAAAGAAGGCAGCTCAAAGGCCGAAACGATTAAAGAGAGCCGTATCTGAGAAATCATCACTTCTGGAAAGAGCTGAGGAACTTGCAGATCAAATGCCAGTAAAATGTCCTCATTTTGTCAAAGAGATGCTTCCATCACATGTTGCTGGAGGCTTCTGGCTGGGTCTTCCTTCGACATTCTGCCACAAACATATAGGAACAAGCGACCAGACGATTATATTGGAAGATGAAACTGGCGATAAGTTCAAAACAACATATCTCGGTCATAAGATGGGACTAAGTGCTGGATGGAGAGGGTTTTCCATTCATCACCATTTGCTTGAGGGAGATGTTTTAGTCTTCCAAAAAGTCAGGGCTCATGAATTTAAGGTAAATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

160

Amino Acids

18.04

Weight (kDa)

9.74

Isoelectric Point (pI)

59.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 73 - 158 1.3e-14 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017257)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g41030 FvH4_2g41030
rosa_chinensis RchiOBHm_Chr6g0299531
rosa_laevigata RLG00000011418
rosa_multiflora Rmu_sc0004064.1_g000007
rosa_roxburghii Rroxscaffold_7G00168580
rosa_samantha Rh6AG400900 Rh6AG401000 Rh6BG409500 Rh6CG414900 Rh6DG402000 Rh6DG402100
rosa_wichuraiana Rw6G035090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 464
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 4 cut(s) 54, 80, 105, 349
AluBI AGCT 3 cut(s) 15, 116, 176
AluI AGCT 3 cut(s) 15, 116, 176
Alw21I GWGCWC 1 cut(s) 17
AoxI GGCC 2 cut(s) 90, 122
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 464
AsuHPI GGTGA 1 cut(s) 404
BanII GRGCYC 2 cut(s) 17, 460
BbsI GAAGAC 2 cut(s) 260, 433
Bbv12I GWGCWC 1 cut(s) 17
BbvCI CCTCAGC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 125
BccI CCATC 3 cut(s) 244, 367, 384
BceAI ACGGC 1 cut(s) 128
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BmsI GCATC 1 cut(s) 219
BpiI GAAGAC 2 cut(s) 260, 433
BpmI CTGGAG 1 cut(s) 270
Bpu10I CCTNAGC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 443
BsaJI CCNNGG 1 cut(s) 18
Bse1I ACTGG 2 cut(s) 200, 340
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 395
BseMII CTCAG 2 cut(s) 141, 168
BseNI ACTGG 2 cut(s) 200, 340
BseXI GCAGC 1 cut(s) 125
BseYI CCCAGC 1 cut(s) 262
BshFI GGCC 2 cut(s) 92, 124
BsiHKAI GWGCWC 1 cut(s) 17
BslFI GGGAC 1 cut(s) 390
BsmFI GGGAC 1 cut(s) 390
BsnI GGCC 2 cut(s) 92, 124
Bsp1286I GDGCHC 2 cut(s) 17, 460
Bsp143I GATC 2 cut(s) 30, 190
BspANI GGCC 2 cut(s) 92, 124
BspCNI CTCAG 2 cut(s) 142, 169
BspHI TCATGA 1 cut(s) 460
BsrI ACTGG 2 cut(s) 200, 340
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 2 cut(s) 30, 190
BssT1I CCWWGG 1 cut(s) 18
BstDEI CTNAG 5 cut(s) 24, 36, 150, 177, 380
BstF5I GGATG 1 cut(s) 395
BstKTI GATC 2 cut(s) 33, 193
BstMBI GATC 2 cut(s) 30, 190
BstNSI RCATGY 1 cut(s) 245
BstV1I GCAGC 1 cut(s) 125
BstV2I GAAGAC 2 cut(s) 260, 433
BsuRI GGCC 2 cut(s) 92, 124
BtsCI GGATG 1 cut(s) 395
CciI TCATGA 1 cut(s) 460
CviAII CATG 2 cut(s) 242, 461
DdeI CTNAG 5 cut(s) 24, 36, 150, 177, 380
DpnI GATC 2 cut(s) 32, 192
DpnII GATC 2 cut(s) 30, 190
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 18
Eco24I GRGCYC 2 cut(s) 17, 460
Eco53kI GAGCTC 1 cut(s) 15
EcoICRI GAGCTC 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 18
EcoT38I GRGCYC 2 cut(s) 17, 460
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 2 cut(s) 245, 464
FaiI YATR 9 cut(s) 243, 294, 296, 320, 358, 369, 462, 479, 481
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 1 cut(s) 390
FatI CATG 2 cut(s) 241, 460
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 1 cut(s) 402
FriOI GRGCYC 2 cut(s) 17, 460
Fsp4HI GCNGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 114
GsaI CCCAGC 1 cut(s) 266
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 2 cut(s) 92, 124
Hin1II CATG 2 cut(s) 245, 464
HphI GGTGA 1 cut(s) 404
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 2 cut(s) 167, 461
HpyAV CCTTC 3 cut(s) 60, 103, 282
HpyCH4V TGCA 1 cut(s) 188
HpyF3I CTNAG 5 cut(s) 24, 36, 150, 177, 380
Hsp92II CATG 2 cut(s) 245, 464
Kzo9I GATC 2 cut(s) 30, 190
LmnI GCTCC 1 cut(s) 20
Lsp1109I GCAGC 1 cut(s) 125
LweI GCATC 1 cut(s) 219
MalI GATC 2 cut(s) 32, 192
MboI GATC 2 cut(s) 30, 190
MboII GAAGA 4 cut(s) 40, 260, 338, 433
MhlI GDGCHC 2 cut(s) 17, 460
MluCI AATT 2 cut(s) 100, 464
MnlI CCTC 6 cut(s) 33, 172, 222, 245, 389, 418
MseI TTAA 2 cut(s) 134, 468
NdeII GATC 2 cut(s) 30, 190
NlaIII CATG 2 cut(s) 245, 464
NspI RCATGY 1 cut(s) 245
PagI TCATGA 1 cut(s) 460
PciI ACATGT 1 cut(s) 241
PkrI GCNGC 1 cut(s) 115
PscI ACATGT 1 cut(s) 241
Psp124BI GAGCTC 1 cut(s) 17
PspFI CCCAGC 1 cut(s) 262
SacI GAGCTC 1 cut(s) 17
SaqAI TTAA 2 cut(s) 134, 468
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 2 cut(s) 30, 190
SduI GDGCHC 2 cut(s) 17, 460
SetI ASST 5 cut(s) 17, 52, 118, 178, 474
SfaNI GCATC 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 2 cut(s) 100, 464
SstI GAGCTC 1 cut(s) 17
StyI CCWWGG 1 cut(s) 18
TaqI TCGA 1 cut(s) 275
TaqII GACCGA 1 cut(s) 353
TasI AATT 2 cut(s) 100, 464
Tru1I TTAA 2 cut(s) 134, 468
Tru9I TTAA 2 cut(s) 134, 468
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 3 cut(s) 345, 398, 477
XapI RAATTY 1 cut(s) 464
XceI RCATGY 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.