Rh6CG414900

B3 domain-containing protein Os01g0234100-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0017257
Physical Location & Seq
Forward (+)
59962298 .. 59964542
2245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG414900.1

Sequence Viewer

Length: 1230 bp
ATGGCAAAACAGAGCTCCAAGGCTAAGAAGATCGCTAAGAGGGAAAGACCTTCAAATAAACAAGAGAAACAGATAATTGAAAACAATGTGGCCTGTGGTAATTCAAAGAAGGCAGCTCAAAGGCCGAAACGATTAAAGAGAGCCATATCTGAGAAATCATCACTTCTGGAAAGAGCTGAGGAACTTGCAGATCAAATGCCAGTAAAATGTCCTCATTTTGTCAAAGTGATGCTTCCATCACATGTTGCTGGAGGCTTCTGGCTGGGTCTTCCTTCGACATTCTGCCACAAACATATAGGAACAAGCGACCAGACGATTATATTGGAAGATGAAACTGGCGATAAGTTCAAAACAACGTATCTCGGTCATAAGATGGGACTGAGTGCTGGATGGAGAGGGTTTTCCATTCATCACCATTTGCTTGAGGGAGATGTTTTAGTCTTCCAAAAAGTCAGGGCTCATGAATTTAAGGTTTATATAGTTAAACCTAATTCAGATCACGCAGAGGACTCTCAAATGGCATCCGTTACTACATGTAGCATTCCAACAATATCTGATATTTCTGAAGATATATTGTACATTGACAATTATGTCGGAAGTACAGAGAGTGAAGAAGAAGATACGTTCAATTATATTGACAATTATGAAGCCGGTGCAGAGAGTGAAGATGATATTGACCCTGAATTTTTCAAAGGAGCTGGGCTTTCGGAGTCTTCTGTCACTTGTTTTAAAGAAGTGACATGCATCGAGAAGTTCAAGATCATATTCAATGGCTGTGACATCTTGGTTCCTAAACTCGTCCTGAAGAAATATTATGAGCTTTGCCGCAGCCAAAACTCATACCTGCATGAAAATCTTGTGGAGTCTCTTAACAGCCAACTGGTTGCCGGACTAATCTCTGAGACGGTCAATATTGCAGATGCAATTACATTCTGCAAGATTACCACCGAGGAGTCTGAGTTTTCGACGTGGGACAAGACCTTGCAAGCCTGTGAGATGTTAGGCATGAATGTGGGCTTCATGCGCAGCCGAGCGAGCAAGCTTGCAAGCCTTGCGGCAGAATCAAAGACGTACAAAGACGCGAGACTTGCAAGAGAGCAAGAAGAAGCAGAGTTTCGGGTCAGGTTGGCTGACTTTTTGAAAGAAAAAGATAAAGCAGATCGGGAGGGGTCTGAGAAATCAGTGCAGGTTGCTACAAGTTTCAAACAAGTGACAAATGTACCTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

409

Amino Acids

46.0

Weight (kDa)

5.86

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 73 - 161 8.5e-15 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017257)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g41030 FvH4_2g41030
rosa_chinensis RchiOBHm_Chr6g0299531
rosa_laevigata RLG00000011418
rosa_multiflora Rmu_sc0004064.1_g000007
rosa_roxburghii Rroxscaffold_7G00168580
rosa_samantha Rh6AG400900 Rh6AG401000 Rh6BG409500 Rh6CG414900 Rh6DG402000 Rh6DG402100
rosa_wichuraiana Rw6G035090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 590
Acc16I TGCGCA 1 cut(s) 1025
Acc36I ACCTGC 2 cut(s) 852, 1177
AccII CGCG 1 cut(s) 1082
AciI CCGC 2 cut(s) 826, 1055
AcsI RAATTY 2 cut(s) 464, 683
AcuI CTGAAG 2 cut(s) 585, 824
AfaI GTAC 4 cut(s) 578, 601, 1073, 1221
AflIII ACRYGT 2 cut(s) 241, 533
AjiI CACGTC 1 cut(s) 969
AluBI AGCT 6 cut(s) 15, 116, 176, 698, 820, 1042
AluI AGCT 6 cut(s) 15, 116, 176, 698, 820, 1042
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 3 cut(s) 870, 896, 1078
AoxI GGCC 2 cut(s) 90, 122
ApeKI GCWGC 3 cut(s) 113, 828, 1026
ApoI RAATTY 2 cut(s) 464, 683
AspLEI GCGC 1 cut(s) 1026
AsuHPI GGTGA 1 cut(s) 404
BaeI ACNNNNGTAYC 1 cut(s) 1203
BanII GRGCYC 2 cut(s) 17, 460
BbsI GAAGAC 3 cut(s) 260, 433, 705
Bbv12I GWGCWC 1 cut(s) 17
BbvCI CCTCAGC 1 cut(s) 177
BbvI GCAGC 3 cut(s) 125, 840, 1038
BccI CCATC 3 cut(s) 244, 367, 384
BcoDI GTCTC 3 cut(s) 870, 896, 1078
BfuAI ACCTGC 2 cut(s) 852, 1177
BisI GCNGC 5 cut(s) 114, 826, 829, 1027, 1056
BlsI GCNGC 5 cut(s) 115, 827, 830, 1028, 1057
BmgBI CACGTC 1 cut(s) 969
BmiI GGNNCC 1 cut(s) 789
BmsI GCATC 4 cut(s) 219, 530, 753, 910
BpiI GAAGAC 3 cut(s) 260, 433, 705
BpmI CTGGAG 1 cut(s) 270
Bpu10I CCTNAGC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 443
BsaJI CCNNGG 3 cut(s) 18, 948, 1223
BsaXI ACNNNNNCTCC 2 cut(s) 944, 974
Bse118I RCCGGY 1 cut(s) 650
Bse1I ACTGG 3 cut(s) 200, 340, 885
BseDI CCNNGG 3 cut(s) 18, 948, 1223
BseGI GGATG 2 cut(s) 395, 521
BseMII CTCAG 6 cut(s) 141, 168, 371, 891, 948, 1164
BseNI ACTGG 3 cut(s) 200, 340, 885
BseRI GAGGAG 1 cut(s) 965
BseXI GCAGC 3 cut(s) 125, 840, 1038
BseYI CCCAGC 2 cut(s) 262, 698
BsgI GTGCAG 2 cut(s) 675, 1205
Bsh1236I CGCG 1 cut(s) 1082
BshFI GGCC 2 cut(s) 92, 124
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 2 cut(s) 651, 888
BslFI GGGAC 2 cut(s) 390, 986
BsmAI GTCTC 3 cut(s) 870, 896, 1078
BsmBI CGTCTC 1 cut(s) 896
BsmFI GGGAC 2 cut(s) 390, 986
BsmI GAATGC 1 cut(s) 540
BsnI GGCC 2 cut(s) 92, 124
Bsp1286I GDGCHC 2 cut(s) 17, 460
Bsp1407I TGTACA 1 cut(s) 576
Bsp143I GATC 5 cut(s) 30, 190, 496, 759, 1159
BspACI CCGC 2 cut(s) 826, 1055
BspANI GGCC 2 cut(s) 92, 124
BspCNI CTCAG 6 cut(s) 142, 169, 372, 892, 949, 1165
BspFNI CGCG 1 cut(s) 1082
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 1 cut(s) 789
BspMI ACCTGC 2 cut(s) 852, 1177
BsrFI RCCGGY 1 cut(s) 650
BsrGI TGTACA 1 cut(s) 576
BsrI ACTGG 3 cut(s) 200, 340, 885
BssAI RCCGGY 1 cut(s) 650
BssECI CCNNGG 3 cut(s) 18, 948, 1223
BssMI GATC 5 cut(s) 30, 190, 496, 759, 1159
BssT1I CCWWGG 2 cut(s) 18, 1223
Bst4CI ACNGT 1 cut(s) 907
BstAPI GCANNNNNTGC 1 cut(s) 1052
BstAUI TGTACA 1 cut(s) 576
BstC8I GCNNGC 5 cut(s) 987, 1036, 1040, 1044, 1048
BstDEI CTNAG 8 cut(s) 24, 36, 150, 177, 380, 900, 957, 1173
BstF5I GGATG 2 cut(s) 395, 521
BstFNI CGCG 1 cut(s) 1082
BstHHI GCGC 1 cut(s) 1026
BstKTI GATC 5 cut(s) 33, 193, 499, 762, 1162
BstMAI GTCTC 3 cut(s) 870, 896, 1078
BstMBI GATC 5 cut(s) 30, 190, 496, 759, 1159
BstMWI GCNNNNNNNGC 4 cut(s) 1023, 1035, 1052, 1088
BstNSI RCATGY 3 cut(s) 245, 537, 744
BstUI CGCG 1 cut(s) 1082
BstV1I GCAGC 3 cut(s) 125, 840, 1038
BstV2I GAAGAC 3 cut(s) 260, 433, 705
BsuRI GGCC 2 cut(s) 92, 124
BtrI CACGTC 1 cut(s) 969
BtsCI GGATG 2 cut(s) 395, 521
BtsIMutI CAGTG 1 cut(s) 1188
BveI ACCTGC 2 cut(s) 852, 1177
Cac8I GCNNGC 5 cut(s) 987, 1036, 1040, 1044, 1048
CciI TCATGA 1 cut(s) 460
CfoI GCGC 1 cut(s) 1026
Cfr10I RCCGGY 1 cut(s) 650
CseI GACGC 1 cut(s) 1088
Csp6I GTAC 4 cut(s) 577, 600, 1072, 1220
CviAII CATG 7 cut(s) 242, 461, 534, 741, 848, 1006, 1021
CviQI GTAC 4 cut(s) 577, 600, 1072, 1220
DdeI CTNAG 8 cut(s) 24, 36, 150, 177, 380, 900, 957, 1173
DpnI GATC 5 cut(s) 32, 192, 498, 761, 1161
DpnII GATC 5 cut(s) 30, 190, 496, 759, 1159
DraI TTTAAA 1 cut(s) 730
DrdI GACNNNNNNGTC 1 cut(s) 590
DseDI GACNNNNNNGTC 1 cut(s) 590
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 2 cut(s) 18, 1223
Eco24I GRGCYC 2 cut(s) 17, 460
Eco53kI GAGCTC 1 cut(s) 15
Eco57I CTGAAG 2 cut(s) 585, 824
EcoICRI GAGCTC 1 cut(s) 15
EcoT14I CCWWGG 2 cut(s) 18, 1223
EcoT22I ATGCAT 1 cut(s) 746
EcoT38I GRGCYC 2 cut(s) 17, 460
ErhI CCWWGG 2 cut(s) 18, 1223
Esp3I CGTCTC 1 cut(s) 896
FaeI CATG 7 cut(s) 245, 464, 537, 744, 851, 1009, 1024
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 2 cut(s) 390, 986
FatI CATG 7 cut(s) 241, 460, 533, 740, 847, 1005, 1020
Fnu4HI GCNGC 5 cut(s) 114, 826, 829, 1027, 1056
FokI GGATG 2 cut(s) 402, 508
FriOI GRGCYC 2 cut(s) 17, 460
Fsp4HI GCNGC 5 cut(s) 114, 826, 829, 1027, 1056
FspI TGCGCA 1 cut(s) 1025
GlaI GCGC 1 cut(s) 1025
GluI GCNGC 5 cut(s) 114, 826, 829, 1027, 1056
GsaI CCCAGC 2 cut(s) 266, 702
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 2 cut(s) 92, 124
HapII CCGG 2 cut(s) 651, 888
HgaI GACGC 1 cut(s) 1088
HhaI GCGC 1 cut(s) 1026
Hin1II CATG 7 cut(s) 245, 464, 537, 744, 851, 1009, 1024
Hin6I GCGC 1 cut(s) 1024
HinP1I GCGC 1 cut(s) 1024
HindIII AAGCTT 1 cut(s) 1040
HinfI GANTC 5 cut(s) 509, 710, 863, 953, 1061
HpaII CCGG 2 cut(s) 651, 888
HphI GGTGA 1 cut(s) 404
Hpy188I TCNGA 9 cut(s) 151, 496, 556, 565, 596, 709, 901, 958, 1174
Hpy188III TCNNGA 6 cut(s) 167, 461, 748, 757, 802, 1163
Hpy99I CGWCG 1 cut(s) 970
HpyAV CCTTC 3 cut(s) 60, 103, 282
HpyCH4III ACNGT 1 cut(s) 907
HpyCH4IV ACGT 4 cut(s) 356, 623, 968, 1070
HpyF10VI GCNNNNNNNGC 4 cut(s) 1023, 1035, 1052, 1088
HpyF3I CTNAG 8 cut(s) 24, 36, 150, 177, 380, 900, 957, 1173
HpySE526I ACGT 4 cut(s) 356, 623, 968, 1070
Hsp92II CATG 7 cut(s) 245, 464, 537, 744, 851, 1009, 1024
HspAI GCGC 1 cut(s) 1024
Kzo9I GATC 5 cut(s) 30, 190, 496, 759, 1159
LmnI GCTCC 2 cut(s) 20, 695
Lsp1109I GCAGC 3 cut(s) 125, 840, 1038
LweI GCATC 4 cut(s) 219, 530, 753, 910
MaeII ACGT 4 cut(s) 356, 623, 968, 1070
MaeIII GTNAC 5 cut(s) 526, 718, 736, 776, 1210
MalI GATC 5 cut(s) 32, 192, 498, 761, 1161
MboI GATC 5 cut(s) 30, 190, 496, 759, 1159
MhlI GDGCHC 2 cut(s) 17, 460
MluCI AATT 9 cut(s) 75, 100, 464, 490, 586, 628, 640, 683, 924
MlyI GAGTC 4 cut(s) 503, 719, 872, 962
MmeI TCCRAC 2 cut(s) 569, 574
MnlI CCTC 9 cut(s) 33, 172, 222, 245, 389, 418, 499, 943, 1159
Mph1103I ATGCAT 1 cut(s) 746
MseI TTAA 5 cut(s) 134, 468, 483, 729, 870
MslI CAYNNNNRTG 1 cut(s) 1010
MspI CCGG 2 cut(s) 651, 888
Mva1269I GAATGC 1 cut(s) 540
MvnI CGCG 1 cut(s) 1082
MwoI GCNNNNNNNGC 4 cut(s) 1023, 1035, 1052, 1088
NdeII GATC 5 cut(s) 30, 190, 496, 759, 1159
NlaIII CATG 7 cut(s) 245, 464, 537, 744, 851, 1009, 1024
NlaIV GGNNCC 1 cut(s) 789
NmeAIII GCCGAG 1 cut(s) 1055
NmuCI GTSAC 4 cut(s) 718, 736, 776, 1210
NsbI TGCGCA 1 cut(s) 1025
NsiI ATGCAT 1 cut(s) 746
NspI RCATGY 3 cut(s) 245, 537, 744
PagI TCATGA 1 cut(s) 460
PciI ACATGT 2 cut(s) 241, 533
PctI GAATGC 1 cut(s) 540
PfeI GAWTC 1 cut(s) 1061
PkrI GCNGC 5 cut(s) 115, 827, 830, 1028, 1057
PleI GAGTC 4 cut(s) 503, 718, 871, 961
PpsI GAGTC 4 cut(s) 503, 718, 871, 961
PscI ACATGT 2 cut(s) 241, 533
Psp124BI GAGCTC 1 cut(s) 17
PspFI CCCAGC 2 cut(s) 262, 698
PspN4I GGNNCC 1 cut(s) 789
RsaI GTAC 4 cut(s) 578, 601, 1073, 1221
RsaNI GTAC 4 cut(s) 577, 600, 1072, 1220
RseI CAYNNNNRTG 1 cut(s) 1010
SacI GAGCTC 1 cut(s) 17
SaqAI TTAA 5 cut(s) 134, 468, 483, 729, 870
SatI GCNGC 5 cut(s) 114, 826, 829, 1027, 1056
Sau3AI GATC 5 cut(s) 30, 190, 496, 759, 1159
SchI GAGTC 4 cut(s) 503, 719, 872, 962
SduI GDGCHC 2 cut(s) 17, 460
SfaNI GCATC 4 cut(s) 219, 530, 753, 910
SmiMI CAYNNNNRTG 1 cut(s) 1010
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 9 cut(s) 75, 100, 464, 490, 586, 628, 640, 683, 924
SsiI CCGC 2 cut(s) 826, 1055
SspI AATATT 2 cut(s) 812, 913
SstI GAGCTC 1 cut(s) 17
StyI CCWWGG 2 cut(s) 18, 1223
TaaI ACNGT 1 cut(s) 907
TaiI ACGT 4 cut(s) 359, 626, 971, 1073
TaqI TCGA 3 cut(s) 275, 747, 965
TaqII GACCGA 1 cut(s) 353
TasI AATT 9 cut(s) 75, 100, 464, 490, 586, 628, 640, 683, 924
TatI WGTACW 2 cut(s) 576, 599
TauI GCSGC 2 cut(s) 828, 1058
TfiI GAWTC 1 cut(s) 1061
Tru1I TTAA 5 cut(s) 134, 468, 483, 729, 870
Tru9I TTAA 5 cut(s) 134, 468, 483, 729, 870
TscAI CASTG 1 cut(s) 1188
TseFI GTSAC 4 cut(s) 718, 736, 776, 1210
TseI GCWGC 3 cut(s) 113, 828, 1026
Tsp45I GTSAC 4 cut(s) 718, 736, 776, 1210
TspDTI ATGAA 7 cut(s) 345, 398, 477, 660, 864, 1009, 1022
TspGWI ACGGA 1 cut(s) 514
TspRI CASTG 1 cut(s) 1188
XapI RAATTY 2 cut(s) 464, 683
XceI RCATGY 3 cut(s) 245, 537, 744
Zsp2I ATGCAT 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.