Rmu_sc0004323.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004323.1
OG0011679
Physical Location & Seq
Reverse (-)
30079 .. 32647
2569 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 645 bp
atggccaccatcgccaactctctcattgtcattgtcctcttcagtctcattagccatgggttatgcgttatttgcaccaataaggacattcagatcgttacgacacggagtgggacggtggttcaaggcaaacccgaatggaacgtggtggtgactaacacctgcaagtgctctcaagccaagattaaactgagttgcaagggatttcagactgtagagccggtcagttcttcgatcctatcggagataggtgttgacacatatcaactcatcaacggcgatagcttagctcctggtgcttttgtcaagttctcctatgcttgggattctccttccaaccttggtctctgctctaacaatcacttactagtactcaagttctctgccctattagtgagattgccttcatcagattattcagaggagaagatcaagcatgtctttttcagagcaaactatgattggaatcgtgatcggacagccctaaaagttgttatacgggttttggattggtctcgtttcatcaacaagaagcaagcacagtatcctgaagaagaagaagaaaatggtggagacgttaatctcaccatagaggaattcaaagctgaagatgaagtgcacaaggatgccgcagactttgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

23.91

Weight (kDa)

5.44

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 27 - 114 8.5e-25 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011679)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32090
fragaria_vesca FvH4_2g28680
malus_domestica MD15G1128900.v1.1
prunus_persica Prupe.1G484200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0297451
rosa_laevigata RLG00000011597
rosa_multiflora Rmu_sc0001572.1_g000018 Rmu_sc0004323.1_g000007
rosa_roxburghii Rroxscaffold_7G00170470 Rroxscaffold_7G00170490
rosa_rugosa Rorug06G0272200 Rorug06G0272300
rosa_samantha Rh6AG383300 Rh6AG383400 Rh6CG396800 Rh6CG397200 Rh6DG384100
rosa_wichuraiana Rw6G033380 Rw6G033390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 170
Acc36I ACCTGC 1 cut(s) 170
AciI CCGC 1 cut(s) 630
AclWI GGATC 1 cut(s) 229
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 596
AcuI CTGAAG 3 cut(s) 25, 570, 627
AdeI CACNNNGTG 1 cut(s) 110
AfaI GTAC 1 cut(s) 372
AfiI CCNNNNNNNGG 1 cut(s) 321
AgsI TTSAA 2 cut(s) 125, 601
AhlI ACTAGT 1 cut(s) 367
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 3 cut(s) 285, 290, 605
AluI AGCT 3 cut(s) 285, 290, 605
Alw21I GWGCWC 2 cut(s) 173, 621
Alw26I GTCTC 4 cut(s) 50, 350, 519, 567
Alw44I GTGCAC 1 cut(s) 617
AlwI GGATC 1 cut(s) 229
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 617
ApoI RAATTY 1 cut(s) 596
AsuHPI GGTGA 2 cut(s) 163, 577
BaeGI GKGCMC 1 cut(s) 621
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 2 cut(s) 173, 621
BccI CCATC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 292
BciT130I CCWGG 1 cut(s) 294
BciVI GTATCC 1 cut(s) 555
BcoDI GTCTC 4 cut(s) 50, 350, 519, 567
BcuI ACTAGT 1 cut(s) 367
BfaI CTAG 1 cut(s) 368
BfmI CTRYAG 1 cut(s) 213
BfuAI ACCTGC 1 cut(s) 170
BfuI GTATCC 1 cut(s) 555
BisI GCNGC 1 cut(s) 630
BlpI GCTNAGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 631
BmcAI AGTACT 1 cut(s) 372
Bme1390I CCNGG 1 cut(s) 294
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 1 cut(s) 616
Bpu1102I GCTNAGC 1 cut(s) 286
BpuEI CTTGAG 2 cut(s) 159, 359
BsaBI GATNNNNATC 1 cut(s) 465
BsaI GGTCTC 2 cut(s) 350, 519
BsaJI CCNNGG 2 cut(s) 55, 340
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse118I RCCGGY 1 cut(s) 220
Bse8I GATNNNNATC 1 cut(s) 465
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 55, 340
BseGI GGATG 1 cut(s) 631
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMII CTCAG 1 cut(s) 182
BseRI GAGGAG 1 cut(s) 437
BseSI GKGCMC 1 cut(s) 621
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 2 cut(s) 173, 621
BsiSI CCGG 1 cut(s) 221
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 1 cut(s) 321
BsmAI GTCTC 4 cut(s) 50, 350, 519, 567
BsmBI CGTCTC 1 cut(s) 567
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 2 cut(s) 350, 519
Bsp1286I GDGCHC 2 cut(s) 173, 621
Bsp143I GATC 4 cut(s) 93, 234, 429, 472
Bsp1720I GCTNAGC 1 cut(s) 286
Bsp19I CCATGG 1 cut(s) 55
BspACI CCGC 1 cut(s) 630
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 183
BspMI ACCTGC 1 cut(s) 170
BspPI GGATC 1 cut(s) 229
BspTNI GGTCTC 2 cut(s) 350, 519
BsrFI RCCGGY 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 2 cut(s) 55, 340
BssMI GATC 4 cut(s) 93, 234, 429, 472
BssT1I CCWWGG 2 cut(s) 55, 340
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 3 cut(s) 118, 214, 543
Bst6I CTCTTC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 537
BstDEI CTNAG 2 cut(s) 191, 286
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 631
BstKTI GATC 4 cut(s) 96, 237, 432, 475
BstMAI GTCTC 4 cut(s) 50, 350, 519, 567
BstMBI GATC 4 cut(s) 93, 234, 429, 472
BstMWI GCNNNNNNNGC 3 cut(s) 11, 72, 296
BstNI CCWGG 1 cut(s) 294
BstNSI RCATGY 1 cut(s) 440
BstSCI CCNGG 1 cut(s) 292
BstSFI CTRYAG 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 621
BsuI GTATCC 1 cut(s) 555
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 55
BtsCI GGATG 1 cut(s) 631
BveI ACCTGC 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 537
Cfr10I RCCGGY 1 cut(s) 220
Csp6I GTAC 1 cut(s) 371
CviAII CATG 2 cut(s) 56, 437
CviJI RGCY 8 cut(s) 5, 54, 179, 220, 285, 290, 482, 605
CviKI_1 RGCY 8 cut(s) 5, 54, 179, 220, 285, 290, 482, 605
CviQI GTAC 1 cut(s) 371
DdeI CTNAG 2 cut(s) 191, 286
DpnI GATC 4 cut(s) 95, 236, 431, 474
DpnII GATC 4 cut(s) 93, 234, 429, 472
DraIII CACNNNGTG 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 2 cut(s) 55, 340
Eco31I GGTCTC 2 cut(s) 350, 519
Eco57I CTGAAG 3 cut(s) 25, 570, 627
EcoRI GAATTC 1 cut(s) 596
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 2 cut(s) 55, 340
ErhI CCWWGG 2 cut(s) 55, 340
Esp3I CGTCTC 1 cut(s) 567
FaeI CATG 2 cut(s) 59, 440
FaiI YATR 8 cut(s) 57, 64, 262, 318, 438, 459, 497, 590
FalI AAGNNNNNCTT 2 cut(s) 425, 457
FaqI GGGAC 1 cut(s) 127
FatI CATG 2 cut(s) 55, 436
Fnu4HI GCNGC 1 cut(s) 630
FokI GGATG 1 cut(s) 638
Fsp4HI GCNGC 1 cut(s) 630
FspBI CTAG 1 cut(s) 368
GluI GCNGC 1 cut(s) 630
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 221
Hin1II CATG 2 cut(s) 59, 440
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 2 cut(s) 326, 466
HpaII CCGG 1 cut(s) 221
HphI GGTGA 2 cut(s) 163, 577
Hpy166II GTNNAC 2 cut(s) 256, 619
Hpy188I TCNGA 7 cut(s) 93, 210, 244, 412, 421, 449, 477
Hpy188III TCNNGA 2 cut(s) 470, 548
Hpy8I GTNNAC 2 cut(s) 256, 619
HpyAV CCTTC 2 cut(s) 342, 414
HpyCH4III ACNGT 3 cut(s) 118, 214, 543
HpyCH4IV ACGT 2 cut(s) 144, 576
HpyCH4V TGCA 4 cut(s) 75, 165, 198, 619
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 72, 296
HpyF3I CTNAG 2 cut(s) 191, 286
HpySE526I ACGT 2 cut(s) 144, 576
Hsp92II CATG 2 cut(s) 59, 440
Kzo9I GATC 4 cut(s) 93, 234, 429, 472
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 5 cut(s) 175, 234, 279, 306, 561
LweI GCATC 1 cut(s) 616
MaeI CTAG 1 cut(s) 368
MaeII ACGT 2 cut(s) 144, 576
MaeIII GTNAC 2 cut(s) 97, 151
MalI GATC 4 cut(s) 95, 236, 431, 474
MboI GATC 4 cut(s) 93, 234, 429, 472
MboII GAAGA 8 cut(s) 31, 222, 439, 563, 566, 569, 572, 620
MhlI GDGCHC 2 cut(s) 173, 621
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 596
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 360
MnlI CCTC 3 cut(s) 47, 415, 586
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 186, 579
MslI CAYNNNNRTG 1 cut(s) 624
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 3 cut(s) 11, 72, 296
NcoI CCATGG 1 cut(s) 55
NdeII GATC 4 cut(s) 93, 234, 429, 472
NlaIII CATG 2 cut(s) 59, 440
NmuCI GTSAC 1 cut(s) 151
NspI RCATGY 1 cut(s) 440
PaqCI CACCTGC 1 cut(s) 170
PfeI GAWTC 2 cut(s) 326, 466
PkrI GCNGC 1 cut(s) 631
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
RseI CAYNNNNRTG 1 cut(s) 624
SaqAI TTAA 2 cut(s) 186, 579
SatI GCNGC 1 cut(s) 630
Sau3AI GATC 4 cut(s) 93, 234, 429, 472
ScaI AGTACT 1 cut(s) 372
ScrFI CCNGG 1 cut(s) 294
SduI GDGCHC 2 cut(s) 173, 621
SetI ASST 8 cut(s) 147, 164, 253, 287, 292, 342, 579, 607
SfaNI GCATC 1 cut(s) 616
SfcI CTRYAG 1 cut(s) 213
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 2 cut(s) 174, 374
SmoI CTYRAG 2 cut(s) 174, 374
SpeI ACTAGT 1 cut(s) 367
Sse9I AATT 1 cut(s) 596
SsiI CCGC 1 cut(s) 630
SspMI CTAG 1 cut(s) 368
StyD4I CCNGG 1 cut(s) 292
StyI CCWWGG 2 cut(s) 55, 340
TaaI ACNGT 3 cut(s) 118, 214, 543
TaiI ACGT 2 cut(s) 147, 579
TaqI TCGA 1 cut(s) 233
TasI AATT 1 cut(s) 596
TatI WGTACW 1 cut(s) 370
TauI GCSGC 1 cut(s) 632
TfiI GAWTC 2 cut(s) 326, 466
Tru1I TTAA 2 cut(s) 186, 579
Tru9I TTAA 2 cut(s) 186, 579
TseFI GTSAC 1 cut(s) 151
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 3 cut(s) 396, 511, 627
TspGWI ACGGA 1 cut(s) 121
VneI GTGCAC 1 cut(s) 617
XapI RAATTY 1 cut(s) 596
XceI RCATGY 1 cut(s) 440
XspI CTAG 1 cut(s) 368
ZrmI AGTACT 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.