Rmu_sc0004343.1_g000021

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004343.1
OG0007386
Physical Location & Seq
Forward (+)
72320 .. 76337
4018 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 3030 bp
atgtcgtcttcaagacccagtcactcatccagcaattcagggagatcaaggcacactgctagagttattgctcagacaactgtagatgcaaagcttcatgcagattttgaggagtcgggcagttcctttgactactcgagctcagtgcgtgttagcagttcagttgctggggatcaacaacctaggtctgacaaagtgaccactgcttatctccatcacatacagaaagggaagttgatccagccatttggctgcttgctagccttagatgacaaaactttcagggtcattgcatacagtgagaatgcccctgaaatgctgactatggttagtcatgccgtcccaagtgttggggaccacccagttcttggcataggaacagatgtgagaacaattttcacaggccctagtgcctctgcattgcataaggccctcgggttcggggaggtttctctcttaaatcccatcttagtccattgcaagtcatctggaaagcctttctatgctatagtccaccgggtaacaggtagcctggtcattgattttgaaccggtgaagccttatgaagtccccatgactgctgctggagctctgcaatcatacaaacttgcagccaaagcaattgcacgattgcagtccatgaattccattgcttctcttgttatggcagtagtggtcaatgaaggggaaggggatgatgaggttgccggtcctgatgctgcgcagactcaaaagagaaagagactgtggggtttagtagtatgtcataacacaactccaaggtttgtccctttccctctcagatatgcctgtgagtttctagctcaagtgtttgccatccatgtgaataaggaattagagttggaggatcagattattgaaaagaacatcctgcgtacccaaacgctgttgtgtgatatgcttttgcgcgatgctcctttgggtatagtgtcacaaacccctaatattatggatctagtgaaatgtgatggggctgccctgctatacaagaacaagatatggagacttggattaactccaagtgactaccagattcaggacatatccttgtggctcactgagagccatatggattccacaggtttgagtacagatagcttgtatgacgcggggttccctggggctcttgctcttggtgatgtagtgtgtggaatggcagctgtgaagataacttctaaggacacaattttttggttccgatcccacactgctgcagaaatccgatggggtggtgcaaaacatgatccggatgagaaggacgatggctggaaaatgcaccccagatcatcattcaaggctttccttgaagttgtgaagacaaggagcttaccttggaaggactatgaaatggatgcaattcattctttgcagcttattctgaggaatgcattcaaggatgtgggaaccatggatgtaaacaacagtggaatccagatgaggcttagtgacttgaaagttgatggtatgcaagaactggaagcagtgacaggtgagatggtccggttgattgaaacagcaacagtgccaattttggcagttgatgttgatgggtcagttaatgggtggaacacaaaaatttccgagttaactggtcttcctgttgatgaagcaattggaaagaatttactcacacttgtggaagaatcttcaactagcatggtggaaaggatgctggagttggcattgcaaggcaaagaggaacaaaacatccaattcgagataaaaacacacggtgctaggactgactttggtcccatcaggttagttgtgaatgcttgtgcaagcagagatattcatgaaaaagttgtgggagtgtgttttgtggcccaagatatcactggtcagaagactgtgatggacaagttcactcgcattgaaggtgattataaagcaattgtacaaaacccaagtccattgatccccccaatatttggcactgatgaatttggctggtgttctgagtggaatccagcaatgactaagttaactggttggaaacgagaggaggtaatggataaaatgctgttgggggaggtttttgggatcaacatggcttgttgtcctctcaagaatcaagaagcttttgtgaatcttggtgttgtaatcaatcacgccatgactggtcaggtgtctgaaaaggttccttttggtttctggaatcgagttggaaagtacactgaatgtttgttgtgtgtaagtaagaaattggacagtgagggtgcagtcactggggtcttttgcttcttgcagcttgctagcccagaattgcaacaagcacttcatgtccaacgtttatctgaacaaaccgctatgaagagattaaaagcattagcttatattaaaaggcaggtcaggaatcctttatctggaatactattttctcggaaaatgatcgagggtactgagttgggagcagaacaaaaaaagctcgtgcataccagtgcccagtgccagcagcagctcagcaaaatacttgacgactctgatcttgatagcatcattgatggctacttggacctggaaatggttgagttcactttgcatgaagtattggttgcctctattagtcaagtcatgattaagagcaacgccaagagtatcccgattgtccaagatgcaaatgaagagatcatgactgagacaatgtatggcgatagtcttaggcttcaacaagtcttggctgatttcttgtcagtgtcggttaattatatgccaaccggaggccagcttactgtagcagttaatttgacaaaagatcagctgggacaatctgttcatctcgtacatttggaactcaggatatcacatgggggtagtgggataccagaaggattactgaaccagatgtttggaacagatggagacgtatctgaagaaggcattagcctactcataagcagaaagctagtgaagctcatgaatggagatgtacagtacctccgggaagcaggaaagtcaaccttcatcatatctgctgaacttgctgctgcacataagatgaggtcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009639 GO:0009640 GO:0009642 GO:0009791 GO:0009881 GO:0009883 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010018 GO:0010114 GO:0010161 GO:0010201 GO:0010203 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016301 GO:0016310 GO:0016604 GO:0016740 GO:0016772 GO:0016773 GO:0017148 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031516 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046685 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051606 GO:0051716 GO:0055122 GO:0060089 GO:0060255 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0071491 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140096 GO:1901363 GO:1901564 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

1009

Amino Acids

110.95

Weight (kDa)

5.75

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 69 - 185 3e-35 PAS fold
PHY PF00360 299 - 472 2.7e-55 Phytochrome region
PAS PF00989 505 - 619 2e-23 PAS fold
PAS_4 PF08448 513 - 623 1.7e-07 PAS fold
PAS PF00989 635 - 757 6.8e-21 PAS fold
HisKA PF00512 780 - 839 2.5e-08 His Kinase A (phospho-acceptor) domain
HATPase_c PF02518 891 - 998 6.4e-13 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1908
Acc16I TGCGCA 1 cut(s) 723
Acc36I ACCTGC 1 cut(s) 2359
AccB7I CCANNNNNTGG 3 cut(s) 350, 368, 1952
AccII CGCG 2 cut(s) 930, 1130
AccIII TCCGGA 1 cut(s) 1267
AciI CCGC 2 cut(s) 1130, 2328
AclI AACGTT 1 cut(s) 2311
AclWI GGATC 8 cut(s) 180, 232, 876, 981, 1215, 1259, 1933, 2072
AcsI RAATTY 4 cut(s) 643, 1596, 1642, 1964
AcuI CTGAAG 1 cut(s) 2913
AdeI CACNNNGTG 1 cut(s) 1754
AfaI GTAC 8 cut(s) 898, 1111, 1920, 2195, 2422, 2805, 2952, 2957
AfiI CCNNNNNNNGG 7 cut(s) 350, 368, 1057, 1952, 2387, 2545, 2741
AgeI ACCGGT 1 cut(s) 550
AjnI CCWGG 3 cut(s) 531, 1138, 2538
AleI CACNNNNGTG 1 cut(s) 1655
AloI GAACNNNNNNTCC 4 cut(s) 1713, 1745, 2778, 2810
Alw21I GWGCWC 2 cut(s) 143, 592
Alw26I GTCTC 4 cut(s) 736, 1018, 2654, 2877
AlwI GGATC 8 cut(s) 180, 232, 876, 981, 1215, 1259, 1933, 2072
AlwNI CAGNNNCTG 2 cut(s) 167, 2249
Ama87I CYCGRG 2 cut(s) 136, 434
Aor13HI TCCGGA 1 cut(s) 1267
AoxI GGCC 4 cut(s) 403, 429, 1845, 2743
ApoI RAATTY 4 cut(s) 643, 1596, 1642, 1964
ArsI GACNNNNNNTTYG 2 cut(s) 1915, 1947
AsiGI ACCGGT 1 cut(s) 550
Asp700I GAANNNNTTC 2 cut(s) 1409, 2160
AspA2I CCTAGG 1 cut(s) 182
AspLEI GCGC 2 cut(s) 724, 930
AspS9I GGNCC 9 cut(s) 355, 404, 430, 710, 1519, 1772, 1846, 2536, 3024
AsuC2I CCSGG 2 cut(s) 518, 2963
AsuHPI GGTGA 4 cut(s) 565, 1169, 1523, 1913
AsuNHI GCTAGC 2 cut(s) 259, 2276
AvaI CYCGRG 2 cut(s) 136, 434
AvaII GGWCC 6 cut(s) 355, 710, 1519, 1772, 2536, 3024
AvrII CCTAGG 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 2467
BanII GRGCYC 3 cut(s) 143, 592, 1147
BauI CACGAG 1 cut(s) 2450
BbsI GAAGAC 3 cut(s) 1343, 1607, 1874
Bbv12I GWGCWC 2 cut(s) 143, 592
BceAI ACGGC 1 cut(s) 323
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BciT130I CCWGG 3 cut(s) 533, 1140, 2540
BciVI GTATCC 2 cut(s) 2630, 2835
BcnI CCSGG 2 cut(s) 518, 2963
BcoDI GTCTC 4 cut(s) 736, 1018, 2654, 2877
BfmI CTRYAG 4 cut(s) 81, 507, 1233, 2754
BfuAI ACCTGC 1 cut(s) 2359
BfuI GTATCC 2 cut(s) 2630, 2835
BlnI CCTAGG 1 cut(s) 182
BlpI GCTNAGC 1 cut(s) 2483
Bme1390I CCNGG 5 cut(s) 518, 533, 1140, 2540, 2963
Bme18I GGWCC 6 cut(s) 355, 710, 1519, 1772, 2536, 3024
BmeT110I CYCGRG 2 cut(s) 136, 434
BmgT120I GGNCC 9 cut(s) 355, 404, 430, 710, 1519, 1772, 1846, 2536, 3024
BmiI GGNNCC 6 cut(s) 356, 1136, 1217, 1426, 1774, 2163
BmrFI CCNGG 5 cut(s) 518, 533, 1140, 2540, 2963
BmrI ACTGGG 4 cut(s) 12, 356, 2259, 2461
BmsI GCATC 7 cut(s) 76, 706, 922, 1363, 1680, 2526, 2626
BmtI GCTAGC 2 cut(s) 263, 2280
BmuI ACTGGG 4 cut(s) 12, 356, 2259, 2461
BoxI GACNNNNGTC 1 cut(s) 1770
BpiI GAAGAC 3 cut(s) 1343, 1607, 1874
BpmI CTGGAG 2 cut(s) 606, 1715
Bpu1102I GCTNAGC 1 cut(s) 2483
BpuEI CTTGAG 2 cut(s) 810, 2072
BpuMI CCSGG 2 cut(s) 518, 2963
BsaJI CCNNGG 7 cut(s) 182, 433, 779, 1138, 1139, 1352, 1428
BsaWI WCCGGW 4 cut(s) 550, 1267, 1521, 2738
BsaXI ACNNNNNCTCC 2 cut(s) 2943, 2973
Bsc4I CCNNNNNNNGG 7 cut(s) 350, 368, 1057, 1952, 2387, 2545, 2741
Bse118I RCCGGY 2 cut(s) 550, 707
Bse3DI GCAATG 6 cut(s) 288, 419, 475, 648, 1703, 2001
BseAI TCCGGA 1 cut(s) 1267
BseBI CCWGG 3 cut(s) 533, 1140, 2540
BseDI CCNNGG 7 cut(s) 182, 433, 779, 1138, 1139, 1352, 1428
BseLI CCNNNNNNNGG 7 cut(s) 350, 368, 1057, 1952, 2387, 2545, 2741
BseMI GCAATG 6 cut(s) 288, 419, 475, 648, 1703, 2001
BseRI GAGGAG 2 cut(s) 125, 2039
BseSI GKGCMC 1 cut(s) 2467
BseYI CCCAGC 2 cut(s) 167, 2782
BsgI GTGCAG 2 cut(s) 2262, 2994
Bsh1236I CGCG 2 cut(s) 930, 1130
BshFI GGCC 4 cut(s) 405, 431, 1847, 2745
BshTI ACCGGT 1 cut(s) 550
BsiHKAI GWGCWC 2 cut(s) 143, 592
BsiHKCI CYCGRG 2 cut(s) 136, 434
BsiSI CCGG 7 cut(s) 517, 551, 708, 1268, 1522, 2739, 2962
BslFI GGGAC 6 cut(s) 326, 368, 554, 773, 1758, 2799
BslI CCNNNNNNNGG 7 cut(s) 350, 368, 1057, 1952, 2387, 2545, 2741
BsmAI GTCTC 4 cut(s) 736, 1018, 2654, 2877
BsmBI CGTCTC 1 cut(s) 2877
BsmFI GGGAC 6 cut(s) 326, 368, 554, 773, 1758, 2799
BsmI GAATGC 4 cut(s) 310, 1409, 1411, 1798
BsnI GGCC 4 cut(s) 405, 431, 1847, 2745
BsoBI CYCGRG 2 cut(s) 136, 434
Bsp1286I GDGCHC 4 cut(s) 143, 592, 1147, 2467
Bsp13I TCCGGA 1 cut(s) 1267
Bsp1407I TGTACA 2 cut(s) 1918, 2950
Bsp1720I GCTNAGC 1 cut(s) 2483
Bsp19I CCATGG 1 cut(s) 1428
BspACI CCGC 2 cut(s) 1130, 2328
BspANI GGCC 4 cut(s) 405, 431, 1847, 2745
BspEI TCCGGA 1 cut(s) 1267
BspFNI CGCG 2 cut(s) 930, 1130
BspHI TCATGA 4 cut(s) 1816, 2595, 2652, 2937
BspLI GGNNCC 6 cut(s) 356, 1136, 1217, 1426, 1774, 2163
BspMAI CTGCAG 1 cut(s) 1237
BspMI ACCTGC 1 cut(s) 2359
BspOI GCTAGC 2 cut(s) 263, 2280
BspPI GGATC 8 cut(s) 180, 232, 876, 981, 1215, 1259, 1933, 2072
BsrDI GCAATG 6 cut(s) 288, 419, 475, 648, 1703, 2001
BsrFI RCCGGY 2 cut(s) 550, 707
BsrGI TGTACA 2 cut(s) 1918, 2950
BssAI RCCGGY 2 cut(s) 550, 707
BssECI CCNNGG 7 cut(s) 182, 433, 779, 1138, 1139, 1352, 1428
BssSI CACGAG 1 cut(s) 2450
BssT1I CCWWGG 4 cut(s) 182, 779, 1352, 1428
Bst2BI CACGAG 1 cut(s) 2450
Bst2UI CCWGG 3 cut(s) 533, 1140, 2540
Bst6I CTCTTC 2 cut(s) 2330, 2640
BstAUI TGTACA 2 cut(s) 1918, 2950
BstC8I GCNNGC 7 cut(s) 257, 261, 1804, 2274, 2278, 2474, 2747
BstDSI CCRYGG 1 cut(s) 1428
BstFNI CGCG 2 cut(s) 930, 1130
BstHHI GCGC 2 cut(s) 724, 930
BstMAI GTCTC 4 cut(s) 736, 1018, 2654, 2877
BstMWI GCNNNNNNNGC 4 cut(s) 587, 617, 2932, 3002
BstNI CCWGG 3 cut(s) 533, 1140, 2540
BstPAI GACNNNNGTC 1 cut(s) 1770
BstSCI CCNGG 5 cut(s) 516, 531, 1138, 2538, 2961
BstSFI CTRYAG 4 cut(s) 81, 507, 1233, 2754
BstSLI GKGCMC 1 cut(s) 2467
BstUI CGCG 2 cut(s) 930, 1130
BstV2I GAAGAC 3 cut(s) 1343, 1607, 1874
BstX2I RGATCY 1 cut(s) 973
BstXI CCANNNNNNTGG 2 cut(s) 248, 2870
BstYI RGATCY 1 cut(s) 973
BsuI GTATCC 2 cut(s) 2630, 2835
BsuRI GGCC 4 cut(s) 405, 431, 1847, 2745
BtgI CCRYGG 1 cut(s) 1428
BtgZI GCGATG 1 cut(s) 945
BtsI GCAGTG 4 cut(s) 54, 201, 1227, 1509
BveI ACCTGC 1 cut(s) 2359
Cac8I GCNNGC 7 cut(s) 257, 261, 1804, 2274, 2278, 2474, 2747
CaiI CAGNNNCTG 2 cut(s) 167, 2249
CciI TCATGA 4 cut(s) 1816, 2595, 2652, 2937
CfoI GCGC 2 cut(s) 724, 930
Cfr10I RCCGGY 2 cut(s) 550, 707
Cfr13I GGNCC 9 cut(s) 355, 404, 430, 710, 1519, 1772, 1846, 2536, 3024
CseI GACGC 1 cut(s) 1136
Csp6I GTAC 8 cut(s) 897, 1110, 1919, 2194, 2421, 2804, 2951, 2956
CspAI ACCGGT 1 cut(s) 550
CviQI GTAC 8 cut(s) 897, 1110, 1919, 2194, 2421, 2804, 2951, 2956
DraIII CACNNNGTG 1 cut(s) 1754
Eam1104I CTCTTC 2 cut(s) 2330, 2640
EarI CTCTTC 2 cut(s) 2330, 2640
Ecl136II GAGCTC 2 cut(s) 141, 590
Eco130I CCWWGG 4 cut(s) 182, 779, 1352, 1428
Eco24I GRGCYC 3 cut(s) 143, 592, 1147
Eco32I GATATC 2 cut(s) 1855, 2823
Eco47I GGWCC 6 cut(s) 355, 710, 1519, 1772, 2536, 3024
Eco53kI GAGCTC 2 cut(s) 141, 590
Eco57I CTGAAG 1 cut(s) 2913
Eco88I CYCGRG 2 cut(s) 136, 434
EcoICRI GAGCTC 2 cut(s) 141, 590
EcoO109I RGGNCCY 3 cut(s) 404, 430, 3024
EcoRI GAATTC 1 cut(s) 643
EcoRII CCWGG 3 cut(s) 531, 1138, 2538
EcoRV GATATC 2 cut(s) 1855, 2823
EcoT14I CCWWGG 4 cut(s) 182, 779, 1352, 1428
EcoT22I ATGCAT 1 cut(s) 1411
EcoT38I GRGCYC 3 cut(s) 143, 592, 1147
ErhI CCWWGG 4 cut(s) 182, 779, 1352, 1428
Esp3I CGTCTC 1 cut(s) 2877
FalI AAGNNNNNCTT 2 cut(s) 2966, 2998
FaqI GGGAC 6 cut(s) 326, 368, 554, 773, 1758, 2799
FauI CCCGC 1 cut(s) 1123
FauNDI CATATG 1 cut(s) 1089
FriOI GRGCYC 3 cut(s) 143, 592, 1147
FspI TGCGCA 1 cut(s) 723
GlaI GCGC 2 cut(s) 723, 929
GsaI CCCAGC 2 cut(s) 171, 2786
GsuI CTGGAG 2 cut(s) 606, 1715
HaeIII GGCC 4 cut(s) 405, 431, 1847, 2745
HapII CCGG 7 cut(s) 517, 551, 708, 1268, 1522, 2739, 2962
HgaI GACGC 1 cut(s) 1136
HhaI GCGC 2 cut(s) 724, 930
Hin6I GCGC 2 cut(s) 722, 928
HinP1I GCGC 2 cut(s) 722, 928
HincII GTYRAC 3 cut(s) 1608, 2007, 2979
HindII GTYRAC 3 cut(s) 1608, 2007, 2979
HindIII AAGCTT 2 cut(s) 92, 2100
HpaI GTTAAC 2 cut(s) 1608, 2007
HpaII CCGG 7 cut(s) 517, 551, 708, 1268, 1522, 2739, 2962
HphI GGTGA 4 cut(s) 565, 1169, 1523, 1913
Hpy166II GTNNAC 8 cut(s) 514, 1438, 1608, 1887, 2007, 2196, 2556, 2979
Hpy8I GTNNAC 8 cut(s) 514, 1438, 1608, 1887, 2007, 2196, 2556, 2979
HpyAV CCTTC 8 cut(s) 677, 683, 1270, 1351, 1892, 2843, 2891, 2992
HpyCH4IV ACGT 2 cut(s) 2311, 2886
HpyF10VI GCNNNNNNNGC 4 cut(s) 587, 617, 2932, 3002
HpySE526I ACGT 2 cut(s) 2311, 2886
HspAI GCGC 2 cut(s) 722, 928
Kpn2I TCCGGA 1 cut(s) 1267
KspAI GTTAAC 2 cut(s) 1608, 2007
LmnI GCTCC 4 cut(s) 587, 940, 1344, 2432
LweI GCATC 7 cut(s) 76, 706, 922, 1363, 1680, 2526, 2626
MaeII ACGT 2 cut(s) 2311, 2886
MaeIII GTNAC 8 cut(s) 20, 196, 520, 951, 1043, 1466, 1504, 2245
MboII GAAGA 9 cut(s) 1198, 1348, 1607, 1659, 1673, 1879, 2347, 2657, 2906
MfeI CAATTG 3 cut(s) 621, 1632, 1914
MflI RGATCY 1 cut(s) 973
MhlI GDGCHC 4 cut(s) 143, 592, 1147, 2467
MlyI GAGTC 3 cut(s) 122, 721, 2495
MmeI TCCRAC 4 cut(s) 843, 1994, 2167, 2332
Mph1103I ATGCAT 1 cut(s) 1411
MroI TCCGGA 1 cut(s) 1267
MroXI GAANNNNTTC 2 cut(s) 1409, 2160
MslI CAYNNNNRTG 3 cut(s) 842, 1655, 2460
MspA1I CMGCKG 2 cut(s) 1181, 2782
MspI CCGG 7 cut(s) 517, 551, 708, 1268, 1522, 2739, 2962
MspR9I CCNGG 5 cut(s) 518, 533, 1140, 2540, 2963
MunI CAATTG 3 cut(s) 621, 1632, 1914
Mva1269I GAATGC 4 cut(s) 310, 1409, 1411, 1798
MvaI CCWGG 3 cut(s) 533, 1140, 2540
MvnI CGCG 2 cut(s) 930, 1130
MwoI GCNNNNNNNGC 4 cut(s) 587, 617, 2932, 3002
NciI CCSGG 2 cut(s) 518, 2963
NcoI CCATGG 1 cut(s) 1428
NdeI CATATG 1 cut(s) 1089
NheI GCTAGC 2 cut(s) 259, 2276
NlaIV GGNNCC 6 cut(s) 356, 1136, 1217, 1426, 1774, 2163
NmuCI GTSAC 7 cut(s) 20, 196, 951, 1043, 1466, 1504, 2245
NsbI TGCGCA 1 cut(s) 723
NsiI ATGCAT 1 cut(s) 1411
OliI CACNNNNGTG 1 cut(s) 1655
PaeR7I CTCGAG 1 cut(s) 136
PagI TCATGA 4 cut(s) 1816, 2595, 2652, 2937
PasI CCCWGGG 1 cut(s) 1139
PctI GAATGC 4 cut(s) 310, 1409, 1411, 1798
PdmI GAANNNNTTC 2 cut(s) 1409, 2160
PfeI GAWTC 9 cut(s) 1054, 1094, 1449, 1664, 1987, 2092, 2110, 2179, 2377
PflFI GACNNNGTC 1 cut(s) 18
PflMI CCANNNNNTGG 3 cut(s) 350, 368, 1952
PfoI TCCNGGA 1 cut(s) 2961
PinAI ACCGGT 1 cut(s) 550
PleI GAGTC 3 cut(s) 121, 721, 2495
PpsI GAGTC 3 cut(s) 121, 721, 2495
PpuMI RGGWCCY 1 cut(s) 3024
PshAI GACNNNNGTC 1 cut(s) 1770
PsiI TTATAA 1 cut(s) 1908
Psp124BI GAGCTC 2 cut(s) 143, 592
Psp1406I AACGTT 1 cut(s) 2311
Psp5II RGGWCCY 1 cut(s) 3024
Psp6I CCWGG 3 cut(s) 531, 1138, 2538
PspFI CCCAGC 2 cut(s) 167, 2782
PspGI CCWGG 3 cut(s) 531, 1138, 2538
PspN4I GGNNCC 6 cut(s) 356, 1136, 1217, 1426, 1774, 2163
PspPI GGNCC 9 cut(s) 355, 404, 430, 710, 1519, 1772, 1846, 2536, 3024
PspPPI RGGWCCY 1 cut(s) 3024
PspXI VCTCGAGB 1 cut(s) 136
PstI CTGCAG 1 cut(s) 1237
PstNI CAGNNNCTG 2 cut(s) 167, 2249
PsuI RGATCY 1 cut(s) 973
PsyI GACNNNGTC 1 cut(s) 18
PvuII CAGCTG 2 cut(s) 1181, 2782
RsaI GTAC 8 cut(s) 898, 1111, 1920, 2195, 2422, 2805, 2952, 2957
RsaNI GTAC 8 cut(s) 897, 1110, 1919, 2194, 2421, 2804, 2951, 2956
RseI CAYNNNNRTG 3 cut(s) 842, 1655, 2460
SacI GAGCTC 2 cut(s) 143, 592
Sau96I GGNCC 9 cut(s) 355, 404, 430, 710, 1519, 1772, 1846, 2536, 3024
SchI GAGTC 3 cut(s) 122, 721, 2495
ScrFI CCNGG 5 cut(s) 518, 533, 1140, 2540, 2963
SduI GDGCHC 4 cut(s) 143, 592, 1147, 2467
SfaNI GCATC 7 cut(s) 76, 706, 922, 1363, 1680, 2526, 2626
SfcI CTRYAG 4 cut(s) 81, 507, 1233, 2754
Sfr274I CTCGAG 1 cut(s) 136
SinI GGWCC 6 cut(s) 355, 710, 1519, 1772, 2536, 3024
SlaI CTCGAG 1 cut(s) 136
SmiMI CAYNNNNRTG 3 cut(s) 842, 1655, 2460
SmlI CTYRAG 3 cut(s) 136, 825, 2087
SmoI CTYRAG 3 cut(s) 136, 825, 2087
SsiI CCGC 2 cut(s) 1130, 2328
SspI AATATT 2 cut(s) 967, 1950
SstI GAGCTC 2 cut(s) 143, 592
StyD4I CCNGG 5 cut(s) 516, 531, 1138, 2538, 2961
StyI CCWWGG 4 cut(s) 182, 779, 1352, 1428
TaiI ACGT 2 cut(s) 2314, 2889
TaqI TCGA 4 cut(s) 137, 1737, 2182, 2415
TatI WGTACW 4 cut(s) 1109, 1918, 2193, 2950
TfiI GAWTC 9 cut(s) 1054, 1094, 1449, 1664, 1987, 2092, 2110, 2179, 2377
TseFI GTSAC 7 cut(s) 20, 196, 951, 1043, 1466, 1504, 2245
Tsp45I GTSAC 7 cut(s) 20, 196, 951, 1043, 1466, 1504, 2245
Tth111I GACNNNGTC 1 cut(s) 18
Van91I CCANNNNNTGG 3 cut(s) 350, 368, 1952
VpaK11BI GGWCC 6 cut(s) 355, 710, 1519, 1772, 2536, 3024
XapI RAATTY 4 cut(s) 643, 1596, 1642, 1964
XcmI CCANNNNNNNNNTGG 2 cut(s) 365, 1856
XhoI CTCGAG 1 cut(s) 136
XmaJI CCTAGG 1 cut(s) 182
XmnI GAANNNNTTC 2 cut(s) 1409, 2160
Zsp2I ATGCAT 1 cut(s) 1411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.