Rmu_sc0004485.1_g000020

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004485.1
OG0015549
Physical Location & Seq
Reverse (-)
119171 .. 121056
1886 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 960 bp
atggctccttcaatttctaatttctcttctgtcttccttgttcttcttgcactgtatctcggcctcattcaccaggttatgagtcagattgctattaatatcactgttagtccccctaactactgcgcgcccattaatgccaccgatgtcgatcgcgttcagtttgccttgaacttagaattctgtcaagctgagtattttctatacggcgctcttggtaaaggcctcgacagcatcagtccggatttggcccaaggtggtccgcctcccattggtgctcagaaggccttgcttctcaatcctgatgtcgctcgtatcagtgaggagattgcttatcaacaagttggtaacatcaggtctattgttcagactgtgggaggaattccaaggcctctactaaatctcggtctcataaattggggattattctttgacctagcactggggccccttatcccttcatttaatccatacgaaagctccctcaaatttctgttaggggcctatgccatgccttatctcgcacaagtatcctatgttagcgccattccaagcctcaccacaaattcttcttcattatctttggcttcaaagcttttgccaatcaaggctggacagagtgcagtgatacgtacattgttgtaccggaatgcaactcaagtggtgcctccatatagtatcacggtgcgtgaattcaccgaggccatttcccagttcactaacaaacttggaaagtgtggcatcaaaagcgaaggcatcttactagctgacacaaccctcggggcagagaaccggacgaccagtaacgttttgtccgctgatgccaattcactatcgtacgcaagaacagagcgtgagatcttgaggattgtgtatggaaccggcaatgagcgcctgcccttcggattttttcccaaaggtgccaacggcaaaattgcaaggagctttctgctgatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

319

Amino Acids

34.35

Weight (kDa)

8.68

Isoelectric Point (pI)

31.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 48 - 215 2.2e-22 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 664, 920
AccII CGCG 2 cut(s) 128, 156
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 2 cut(s) 263, 816
AclI AACGTT 1 cut(s) 807
AcsI RAATTY 5 cut(s) 179, 381, 488, 565, 692
AfaI GTAC 3 cut(s) 634, 644, 839
AfiI CCNNNNNNNGG 2 cut(s) 272, 442
AgsI TTSAA 3 cut(s) 12, 172, 591
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 5 cut(s) 191, 480, 595, 767, 945
AluI AGCT 5 cut(s) 191, 480, 595, 767, 945
Alw21I GWGCWC 1 cut(s) 280
Alw26I GTCTC 1 cut(s) 413
Ama87I CYCGRG 1 cut(s) 779
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 8 cut(s) 61, 223, 249, 285, 389, 446, 501, 702
ApaI GGGCCC 1 cut(s) 450
ApoI RAATTY 5 cut(s) 179, 381, 488, 565, 692
AseI ATTAAT 2 cut(s) 96, 135
AspLEI GCGC 5 cut(s) 128, 130, 212, 545, 894
AspS9I GGNCC 5 cut(s) 250, 260, 446, 447, 501
AsuHPI GGTGA 3 cut(s) 62, 550, 688
AvaI CYCGRG 1 cut(s) 779
AvaII GGWCC 1 cut(s) 260
BaeGI GKGCMC 1 cut(s) 450
BanI GGYRCC 2 cut(s) 664, 920
BanII GRGCYC 1 cut(s) 450
BarI GAAGNNNNNNTAC 2 cut(s) 744, 776
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 280
BceAI ACGGC 2 cut(s) 223, 943
BciT130I CCWGG 1 cut(s) 74
BciVI GTATCC 1 cut(s) 541
BcoDI GTCTC 1 cut(s) 413
BfaI CTAG 3 cut(s) 437, 764, 958
BfoI RGCGCY 3 cut(s) 213, 546, 895
BfuI GTATCC 1 cut(s) 541
BglII AGATCT 1 cut(s) 858
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 260
BmeT110I CYCGRG 1 cut(s) 779
BmgT120I GGNCC 5 cut(s) 250, 260, 446, 447, 501
BmiI GGNNCC 8 cut(s) 6, 447, 448, 449, 502, 666, 880, 922
BmrFI CCNGG 1 cut(s) 74
BmrI ACTGGG 2 cut(s) 452, 706
BmsI GCATC 4 cut(s) 243, 750, 765, 811
BmuI ACTGGG 2 cut(s) 452, 706
BpiI GAAGAC 1 cut(s) 25
BpuEI CTTGAG 2 cut(s) 642, 883
BsaAI YACGTR 1 cut(s) 632
BsaBI GATNNNNATC 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 413
BsaJI CCNNGG 4 cut(s) 253, 386, 699, 778
BsaWI WCCGGW 3 cut(s) 241, 645, 792
BsaXI ACNNNNNCTCC 2 cut(s) 464, 494
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 442
Bse118I RCCGGY 1 cut(s) 881
Bse1I ACTGG 3 cut(s) 447, 712, 801
Bse3DI GCAATG 1 cut(s) 892
Bse8I GATNNNNATC 1 cut(s) 150
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 4 cut(s) 253, 386, 699, 778
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 2 cut(s) 272, 442
BseMI GCAATG 1 cut(s) 892
BseMII CTCAG 2 cut(s) 183, 293
BseNI ACTGG 3 cut(s) 447, 712, 801
BsePI GCGCGC 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 338
BseSI GKGCMC 1 cut(s) 450
BsgI GTGCAG 1 cut(s) 642
Bsh1236I CGCG 2 cut(s) 128, 156
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 8 cut(s) 63, 225, 251, 287, 391, 448, 503, 704
BshNI GGYRCC 2 cut(s) 664, 920
BsiEI CGRYCG 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 280
BsiHKCI CYCGRG 1 cut(s) 779
BsiSI CCGG 4 cut(s) 242, 646, 793, 882
BsiWI CGTACG 1 cut(s) 837
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 272, 442
BsmAI GTCTC 1 cut(s) 413
BsmFI GGGAC 1 cut(s) 96
BsmI GAATGC 1 cut(s) 655
BsnI GGCC 8 cut(s) 63, 225, 251, 287, 391, 448, 503, 704
Bso31I GGTCTC 1 cut(s) 413
BsoBI CYCGRG 1 cut(s) 779
Bsp120I GGGCCC 1 cut(s) 446
Bsp1286I GDGCHC 2 cut(s) 280, 450
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 3 cut(s) 151, 858, 954
BspACI CCGC 2 cut(s) 263, 816
BspANI GGCC 8 cut(s) 63, 225, 251, 287, 391, 448, 503, 704
BspCNI CTCAG 2 cut(s) 184, 292
BspEI TCCGGA 1 cut(s) 241
BspFNI CGCG 2 cut(s) 128, 156
BspLI GGNNCC 8 cut(s) 6, 447, 448, 449, 502, 666, 880, 922
BspT107I GGYRCC 2 cut(s) 664, 920
BspTNI GGTCTC 1 cut(s) 413
BsrDI GCAATG 1 cut(s) 892
BsrFI RCCGGY 1 cut(s) 881
BsrI ACTGG 3 cut(s) 447, 712, 801
BssAI RCCGGY 1 cut(s) 881
BssECI CCNNGG 4 cut(s) 253, 386, 699, 778
BssHII GCGCGC 1 cut(s) 126
BssMI GATC 3 cut(s) 151, 858, 954
BssT1I CCWWGG 2 cut(s) 253, 386
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 4 cut(s) 54, 106, 373, 685
Bst6I CTCTTC 1 cut(s) 31
BstBAI YACGTR 1 cut(s) 632
BstC8I GCNNGC 2 cut(s) 128, 896
BstDEI CTNAG 3 cut(s) 175, 192, 279
BstFNI CGCG 2 cut(s) 128, 156
BstH2I RGCGCY 3 cut(s) 213, 546, 895
BstHHI GCGC 5 cut(s) 128, 130, 212, 545, 894
BstKTI GATC 3 cut(s) 154, 861, 957
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 3 cut(s) 151, 858, 954
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 4 cut(s) 231, 284, 747, 891
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstSLI GKGCMC 1 cut(s) 450
BstSNI TACGTA 1 cut(s) 632
BstUI CGCG 2 cut(s) 128, 156
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 858
BstYI RGATCY 1 cut(s) 858
BsuI GTATCC 1 cut(s) 541
BsuRI GGCC 8 cut(s) 63, 225, 251, 287, 391, 448, 503, 704
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 5 cut(s) 50, 102, 325, 440, 630
Cac8I GCNNGC 2 cut(s) 128, 896
CfoI GCGC 5 cut(s) 128, 130, 212, 545, 894
Cfr10I RCCGGY 1 cut(s) 881
Cfr13I GGNCC 5 cut(s) 250, 260, 446, 447, 501
CsiI ACCWGGT 1 cut(s) 72
Csp6I GTAC 3 cut(s) 633, 643, 838
CspCI CAANNNNNGTGG 2 cut(s) 642, 677
CviAII CATG 1 cut(s) 511
CviQI GTAC 3 cut(s) 633, 643, 838
DdeI CTNAG 3 cut(s) 175, 192, 279
DpnI GATC 3 cut(s) 153, 860, 956
DpnII GATC 3 cut(s) 151, 858, 954
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
EciI GGCGGA 1 cut(s) 252
Eco105I TACGTA 1 cut(s) 632
Eco130I CCWWGG 2 cut(s) 253, 386
Eco147I AGGCCT 3 cut(s) 225, 287, 391
Eco24I GRGCYC 1 cut(s) 450
Eco31I GGTCTC 1 cut(s) 413
Eco47I GGWCC 1 cut(s) 260
Eco88I CYCGRG 1 cut(s) 779
EcoO109I RGGNCCY 3 cut(s) 446, 447, 501
EcoRI GAATTC 3 cut(s) 179, 381, 692
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 2 cut(s) 253, 386
EcoT38I GRGCYC 1 cut(s) 450
ErhI CCWWGG 2 cut(s) 253, 386
FaeI CATG 1 cut(s) 514
FaqI GGGAC 1 cut(s) 96
FatI CATG 1 cut(s) 510
FriOI GRGCYC 1 cut(s) 450
FspBI CTAG 3 cut(s) 437, 764, 958
GlaI GCGC 5 cut(s) 127, 129, 211, 544, 893
HaeII RGCGCY 3 cut(s) 213, 546, 895
HaeIII GGCC 8 cut(s) 63, 225, 251, 287, 391, 448, 503, 704
HapII CCGG 4 cut(s) 242, 646, 793, 882
HhaI GCGC 5 cut(s) 128, 130, 212, 545, 894
Hin1II CATG 1 cut(s) 514
Hin6I GCGC 5 cut(s) 126, 128, 210, 543, 892
HinP1I GCGC 5 cut(s) 126, 128, 210, 543, 892
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 1 cut(s) 82
HpaII CCGG 4 cut(s) 242, 646, 793, 882
HphI GGTGA 3 cut(s) 62, 550, 688
Hpy166II GTNNAC 1 cut(s) 717
Hpy188I TCNGA 4 cut(s) 87, 282, 369, 905
Hpy188III TCNNGA 3 cut(s) 242, 302, 862
Hpy8I GTNNAC 1 cut(s) 717
HpyAV CCTTC 5 cut(s) 18, 277, 468, 746, 910
HpyCH4III ACNGT 4 cut(s) 54, 106, 373, 685
HpyCH4IV ACGT 2 cut(s) 631, 807
HpyCH4V TGCA 4 cut(s) 50, 623, 653, 938
HpyF10VI GCNNNNNNNGC 4 cut(s) 231, 284, 747, 891
HpyF3I CTNAG 3 cut(s) 175, 192, 279
HpySE526I ACGT 2 cut(s) 631, 807
Hsp92II CATG 1 cut(s) 514
HspAI GCGC 5 cut(s) 126, 128, 210, 543, 892
Kpn2I TCCGGA 1 cut(s) 241
Kzo9I GATC 3 cut(s) 151, 858, 954
LmnI GCTCC 3 cut(s) 10, 485, 942
LweI GCATC 4 cut(s) 243, 750, 765, 811
MabI ACCWGGT 1 cut(s) 72
MaeI CTAG 3 cut(s) 437, 764, 958
MaeII ACGT 2 cut(s) 631, 807
MaeIII GTNAC 2 cut(s) 347, 803
MalI GATC 3 cut(s) 153, 860, 956
MboI GATC 3 cut(s) 151, 858, 954
MboII GAAGA 5 cut(s) 18, 25, 35, 561, 564
MflI RGATCY 1 cut(s) 858
MhlI GDGCHC 2 cut(s) 280, 450
MlyI GAGTC 1 cut(s) 91
MroI TCCGGA 1 cut(s) 241
MseI TTAA 3 cut(s) 96, 135, 465
MspA1I CMGCKG 1 cut(s) 818
MspI CCGG 4 cut(s) 242, 646, 793, 882
MspR9I CCNGG 1 cut(s) 74
Mva1269I GAATGC 1 cut(s) 655
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 2 cut(s) 128, 156
MwoI GCNNNNNNNGC 4 cut(s) 231, 284, 747, 891
NdeII GATC 3 cut(s) 151, 858, 954
NlaIII CATG 1 cut(s) 514
NlaIV GGNNCC 8 cut(s) 6, 447, 448, 449, 502, 666, 880, 922
NmeAIII GCCGAG 1 cut(s) 39
PauI GCGCGC 1 cut(s) 126
PceI AGGCCT 3 cut(s) 225, 287, 391
PctI GAATGC 1 cut(s) 655
Pfl23II CGTACG 1 cut(s) 837
Ple19I CGATCG 1 cut(s) 154
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
Ppu21I YACGTR 1 cut(s) 632
PshBI ATTAAT 2 cut(s) 96, 135
Psp1406I AACGTT 1 cut(s) 807
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspLI CGTACG 1 cut(s) 837
PspN4I GGNNCC 8 cut(s) 6, 447, 448, 449, 502, 666, 880, 922
PspOMI GGGCCC 1 cut(s) 446
PspPI GGNCC 5 cut(s) 250, 260, 446, 447, 501
PsuI RGATCY 1 cut(s) 858
PteI GCGCGC 1 cut(s) 126
PvuI CGATCG 1 cut(s) 154
RsaI GTAC 3 cut(s) 634, 644, 839
RsaNI GTAC 3 cut(s) 633, 643, 838
SaqAI TTAA 3 cut(s) 96, 135, 465
Sau3AI GATC 3 cut(s) 151, 858, 954
Sau96I GGNCC 5 cut(s) 250, 260, 446, 447, 501
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 2 cut(s) 280, 450
SexAI ACCWGGT 1 cut(s) 72
SfaNI GCATC 4 cut(s) 243, 750, 765, 811
SinI GGWCC 1 cut(s) 260
SmlI CTYRAG 2 cut(s) 657, 862
SmoI CTYRAG 2 cut(s) 657, 862
SnaBI TACGTA 1 cut(s) 632
SseBI AGGCCT 3 cut(s) 225, 287, 391
SsiI CCGC 2 cut(s) 263, 816
SspMI CTAG 3 cut(s) 437, 764, 958
StuI AGGCCT 3 cut(s) 225, 287, 391
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 2 cut(s) 253, 386
TaaI ACNGT 4 cut(s) 54, 106, 373, 685
TaiI ACGT 2 cut(s) 634, 810
TaqI TCGA 2 cut(s) 150, 228
TaqII GACCGA 1 cut(s) 395
Tru1I TTAA 3 cut(s) 96, 135, 465
Tru9I TTAA 3 cut(s) 96, 135, 465
TscAI CASTG 5 cut(s) 57, 109, 325, 447, 630
TspDTI ATGAA 2 cut(s) 450, 564
TspRI CASTG 5 cut(s) 57, 109, 325, 447, 630
VpaK11BI GGWCC 1 cut(s) 260
VspI ATTAAT 2 cut(s) 96, 135
XapI RAATTY 5 cut(s) 179, 381, 488, 565, 692
XspI CTAG 3 cut(s) 437, 764, 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.