Rmu_sc0004490.1_g000009

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004490.1
OG0007946
Physical Location & Seq
Reverse (-)
52982 .. 56340
3359 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1818 bp
atgctacagttttcattcttatttccagctgttagttttctgatttttctttctttctccatatcctttgacagcttgacctttgttgaggcaattcagaaatggcataaaatatatgaaaacgacattgctcgtaccttcagaagtgaatcggcaacgagggcagttctgatgatgacttattctccctgcaaatacattgcatcaaaggccagattcatattgtctgaaacactgaagccaaaaggcctggagtatctgaatatcttactgcgttttcttaataatctgtcatctgggaatttcgcgataccagataaactccaaattatcatttatttaatgggatttatatgctattcaggtttggaagagtatcaagtctggattatcaaacaaaaaggggtaaaaacactattttctttcgtgaaatggtgcttaagtaatcatttccaagtagaaaggttgagctttgctccccatttgcataatacgtttcatgggaaaatttgttgttcaagttccagagaatgggaagggaaagacattcttttgttgtacagtttgttgggattggctgagttgataaagcattctggatgtgtaggagataacctagacagaattgccggtaagaatacattggctcatattgaagctgaactagttagtaaacttcaggacatctgtaacgacaattgtacccctggggtgcaatggtatgccgcatatgttcttagttattttgggttttatggttttccgagtaagctaatgaaaaggattggtaaagcaattaataataaggattctgctgatttgcaattcgttctcacaaatggagagtgtttcagtgttcatggggtggtgcttgcaatccaatgtccatcgctactgcctcctgaagggctgcttcctagtgaggtaacatccgatgattcttcagtgacaggctctatggaggtttctaaagagtttcagaaagacataagattatctgctcatgtcgatcaccaagcattggtgatgttgttggagtatatctacttgggatatgtacaagcagaagaagaacttgcaaaaaagttgaggactcttgccaaacgttgtaatttacagcctctgttacagatgctttgtagaaaacgtccaaagtggggcattgcttttcctagccctgatctcagtgcagctcttggtccatccggacatcgtttctcggatgtcatcttagaagcgaaagaaacaaagcttttgggctggacatgtggtgtttgctctttatcagtgcctcacatgcatgttcacaaggttgtattgtcagcaagttgtgattatctgagggccttgtttgagtcaggaatgcaggagagcaactcacaagccataaaggtctcaatcagttggaaagcaatggttaaactagtcaactacttctattctagtaacctgccaaagcctccttccggatgtatatggaataacatggacactgaagaaaagttagatgaggtacagtcatatgtagagcttttttggctctctgagttctggatcatggaagatgtccaggaagcatgctcggatgccatcatatcatgtcttggttctgcaagagagttggctattaaaatactacaaattgctgcaaatttatctctctggaacttggccgaggttgcagcgacttatatggcccctttatatcgccagttatgtgattctggtgaacttgaaacacttgatgaaatgctggctgatatggttcgggtagcgtctgttcgattctcccaacagggtggtgatcagtttcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB

Protein Analysis

605

Amino Acids

68.19

Weight (kDa)

6.1

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 432 - 502 1.9e-09 BTB/POZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1458
AccB7I CCANNNNNTGG 2 cut(s) 531, 1021
AccII CGCG 1 cut(s) 308
AccIII TCCGGA 2 cut(s) 1205, 1466
AciI CCGC 1 cut(s) 726
AclI AACGTT 1 cut(s) 1105
AclWI GGATC 1 cut(s) 1562
AcoI YGGCCR 1 cut(s) 1671
AcsI RAATTY 3 cut(s) 301, 507, 1651
AcuI CTGAAG 6 cut(s) 124, 257, 662, 924, 927, 1515
AfaI GTAC 5 cut(s) 136, 560, 703, 1059, 1515
AfiI CCNNNNNNNGG 5 cut(s) 531, 905, 1021, 1157, 1466
AflII CTTAAG 1 cut(s) 439
AflIII ACRYGT 1 cut(s) 1265
AgsI TTSAA 3 cut(s) 519, 656, 1736
AhlI ACTAGT 2 cut(s) 664, 1423
AjnI CCWGG 3 cut(s) 249, 706, 1569
AjuI GAANNNNNNNTTGG 2 cut(s) 1447, 1479
AluBI AGCT 8 cut(s) 29, 75, 471, 659, 772, 1193, 1252, 1531
AluI AGCT 8 cut(s) 29, 75, 471, 659, 772, 1193, 1252, 1531
Alw26I GTCTC 1 cut(s) 1399
AlwI GGATC 1 cut(s) 1562
AlwNI CAGNNNCTG 1 cut(s) 1123
Aor13HI TCCGGA 2 cut(s) 1205, 1466
AoxI GGCC 5 cut(s) 210, 247, 1344, 1671, 1695
ApeKI GCWGC 4 cut(s) 910, 1190, 1646, 1682
ApoI RAATTY 3 cut(s) 301, 507, 1651
AseI ATTAAT 1 cut(s) 798
AspS9I GGNCC 3 cut(s) 1199, 1344, 1696
AsuHPI GGTGA 4 cut(s) 1004, 1036, 1739, 1814
AvaII GGWCC 1 cut(s) 1199
BaeI ACNNNNGTAYC 2 cut(s) 685, 718
BbvI GCAGC 4 cut(s) 897, 1202, 1633, 1694
BccI CCATC 3 cut(s) 895, 1210, 1598
BciT130I CCWGG 3 cut(s) 251, 708, 1571
BclI TGATCA 1 cut(s) 1804
BcoDI GTCTC 1 cut(s) 1399
BcuI ACTAGT 2 cut(s) 664, 1423
BfaI CTAG 6 cut(s) 617, 665, 918, 1173, 1424, 1443
BfmI CTRYAG 1 cut(s) 5
BfrI CTTAAG 1 cut(s) 439
BfuAI ACCTGC 1 cut(s) 1458
BisI GCNGC 5 cut(s) 726, 911, 1191, 1647, 1683
BlsI GCNGC 5 cut(s) 727, 912, 1192, 1648, 1684
Bme1390I CCNGG 3 cut(s) 251, 708, 1571
Bme18I GGWCC 1 cut(s) 1199
BmgT120I GGNCC 3 cut(s) 1199, 1344, 1696
BmiI GGNNCC 1 cut(s) 1698
BmrFI CCNGG 3 cut(s) 251, 708, 1571
BmsI GCATC 3 cut(s) 212, 1122, 1576
BplI GAGNNNNNCTC 4 cut(s) 460, 492, 1361, 1393
BpmI CTGGAG 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 1399
BsaJI CCNNGG 3 cut(s) 706, 707, 1674
BsaWI WCCGGW 2 cut(s) 1205, 1466
BsaXI ACNNNNNCTCC 2 cut(s) 169, 199
Bsc4I CCNNNNNNNGG 5 cut(s) 531, 905, 1021, 1157, 1466
Bse118I RCCGGY 1 cut(s) 629
Bse1I ACTGG 1 cut(s) 1711
Bse3DI GCAATG 5 cut(s) 126, 198, 722, 1161, 1419
BseAI TCCGGA 2 cut(s) 1205, 1466
BseBI CCWGG 3 cut(s) 251, 708, 1571
BseDI CCNNGG 3 cut(s) 706, 707, 1674
BseGI GGATG 6 cut(s) 605, 929, 1202, 1228, 1475, 1591
BseLI CCNNNNNNNGG 5 cut(s) 531, 905, 1021, 1157, 1466
BseMI GCAATG 5 cut(s) 126, 198, 722, 1161, 1419
BseMII CTCAG 4 cut(s) 570, 1198, 1331, 1536
BseNI ACTGG 1 cut(s) 1711
BseXI GCAGC 4 cut(s) 897, 1202, 1633, 1694
BsgI GTGCAG 1 cut(s) 1209
Bsh1236I CGCG 1 cut(s) 308
BshFI GGCC 5 cut(s) 212, 249, 1346, 1673, 1697
BsiSI CCGG 3 cut(s) 630, 1206, 1467
BslI CCNNNNNNNGG 5 cut(s) 531, 905, 1021, 1157, 1466
BsmAI GTCTC 1 cut(s) 1399
BsmI GAATGC 2 cut(s) 592, 1368
BsnI GGCC 5 cut(s) 212, 249, 1346, 1673, 1697
Bso31I GGTCTC 1 cut(s) 1399
Bsp13I TCCGGA 2 cut(s) 1205, 1466
Bsp1407I TGTACA 2 cut(s) 558, 1057
Bsp143I GATC 4 cut(s) 1009, 1180, 1554, 1804
Bsp68I TCGCGA 1 cut(s) 308
BspACI CCGC 1 cut(s) 726
BspANI GGCC 5 cut(s) 212, 249, 1346, 1673, 1697
BspCNI CTCAG 4 cut(s) 571, 1197, 1332, 1537
BspEI TCCGGA 2 cut(s) 1205, 1466
BspFNI CGCG 1 cut(s) 308
BspLI GGNNCC 1 cut(s) 1698
BspMI ACCTGC 1 cut(s) 1458
BspPI GGATC 1 cut(s) 1562
BspTI CTTAAG 1 cut(s) 439
BspTNI GGTCTC 1 cut(s) 1399
BsrDI GCAATG 5 cut(s) 126, 198, 722, 1161, 1419
BsrFI RCCGGY 1 cut(s) 629
BsrGI TGTACA 2 cut(s) 558, 1057
BsrI ACTGG 1 cut(s) 1711
BssAI RCCGGY 1 cut(s) 629
BssECI CCNNGG 3 cut(s) 706, 707, 1674
BssMI GATC 4 cut(s) 1009, 1180, 1554, 1804
Bst2UI CCWGG 3 cut(s) 251, 708, 1571
Bst4CI ACNGT 3 cut(s) 9, 563, 1518
Bst6I CTCTTC 1 cut(s) 366
BstAFI CTTAAG 1 cut(s) 439
BstAUI TGTACA 2 cut(s) 558, 1057
BstC8I GCNNGC 3 cut(s) 873, 1579, 1755
BstDEI CTNAG 6 cut(s) 579, 737, 1184, 1231, 1340, 1545
BstENI CCTNNNNNAGG 1 cut(s) 903
BstF5I GGATG 6 cut(s) 605, 929, 1202, 1228, 1475, 1591
BstFNI CGCG 1 cut(s) 308
BstKTI GATC 4 cut(s) 1012, 1183, 1557, 1807
BstMAI GTCTC 1 cut(s) 1399
BstMBI GATC 4 cut(s) 1009, 1180, 1554, 1804
BstMWI GCNNNNNNNGC 5 cut(s) 161, 209, 1297, 1537, 1679
BstNI CCWGG 3 cut(s) 251, 708, 1571
BstNSI RCATGY 4 cut(s) 1269, 1300, 1304, 1581
BstSCI CCNGG 3 cut(s) 249, 706, 1569
BstSFI CTRYAG 1 cut(s) 5
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 4 cut(s) 897, 1202, 1633, 1694
BstXI CCANNNNNNTGG 1 cut(s) 1799
BsuRI GGCC 5 cut(s) 212, 249, 1346, 1673, 1697
BtgZI GCGATG 1 cut(s) 873
BtsCI GGATG 6 cut(s) 605, 929, 1202, 1228, 1475, 1591
BtsIMutI CAGTG 6 cut(s) 233, 859, 951, 1192, 1293, 1491
BtuMI TCGCGA 1 cut(s) 308
BveI ACCTGC 1 cut(s) 1458
Cac8I GCNNGC 3 cut(s) 873, 1579, 1755
CaiI CAGNNNCTG 1 cut(s) 1123
Cfr10I RCCGGY 1 cut(s) 629
Cfr13I GGNCC 3 cut(s) 1199, 1344, 1696
CseI GACGC 1 cut(s) 1764
Csp6I GTAC 5 cut(s) 135, 559, 702, 1058, 1514
CviQI GTAC 5 cut(s) 135, 559, 702, 1058, 1514
DdeI CTNAG 6 cut(s) 579, 737, 1184, 1231, 1340, 1545
DpnI GATC 4 cut(s) 1011, 1182, 1556, 1806
DpnII GATC 4 cut(s) 1009, 1180, 1554, 1804
EaeI YGGCCR 1 cut(s) 1671
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco147I AGGCCT 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 1399
Eco47I GGWCC 1 cut(s) 1199
Eco57I CTGAAG 6 cut(s) 124, 257, 662, 924, 927, 1515
EcoNI CCTNNNNNAGG 1 cut(s) 903
EcoO109I RGGNCCY 1 cut(s) 1344
EcoRII CCWGG 3 cut(s) 249, 706, 1569
EcoT22I ATGCAT 1 cut(s) 1302
FalI AAGNNNNNCTT 6 cut(s) 534, 566, 897, 929, 1059, 1091
FauNDI CATATG 2 cut(s) 730, 1522
FbaI TGATCA 1 cut(s) 1804
Fnu4HI GCNGC 5 cut(s) 726, 911, 1191, 1647, 1683
FokI GGATG 6 cut(s) 612, 916, 1189, 1235, 1482, 1598
Fsp4HI GCNGC 5 cut(s) 726, 911, 1191, 1647, 1683
FspBI CTAG 6 cut(s) 617, 665, 918, 1173, 1424, 1443
GluI GCNGC 5 cut(s) 726, 911, 1191, 1647, 1683
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 5 cut(s) 212, 249, 1346, 1673, 1697
HapII CCGG 3 cut(s) 630, 1206, 1467
HgaI GACGC 1 cut(s) 1764
HincII GTYRAC 1 cut(s) 1429
HindII GTYRAC 1 cut(s) 1429
HindIII AAGCTT 1 cut(s) 1250
HinfI GANTC 8 cut(s) 149, 216, 809, 938, 1093, 1355, 1721, 1785
HpaII CCGG 3 cut(s) 630, 1206, 1467
HphI GGTGA 4 cut(s) 1004, 1036, 1739, 1814
Hpy166II GTNNAC 4 cut(s) 674, 1306, 1429, 1730
Hpy8I GTNNAC 4 cut(s) 674, 1306, 1429, 1730
HpyAV CCTTC 4 cut(s) 148, 530, 899, 1473
HpyCH4III ACNGT 3 cut(s) 9, 563, 1518
HpyCH4IV ACGT 3 cut(s) 494, 1105, 1147
HpyF10VI GCNNNNNNNGC 5 cut(s) 161, 209, 1297, 1537, 1679
HpyF3I CTNAG 6 cut(s) 579, 737, 1184, 1231, 1340, 1545
HpySE526I ACGT 3 cut(s) 494, 1105, 1147
Kpn2I TCCGGA 2 cut(s) 1205, 1466
Ksp22I TGATCA 1 cut(s) 1804
Kzo9I GATC 4 cut(s) 1009, 1180, 1554, 1804
LmnI GCTCC 1 cut(s) 481
Lsp1109I GCAGC 4 cut(s) 897, 1202, 1633, 1694
LweI GCATC 3 cut(s) 212, 1122, 1576
MaeI CTAG 6 cut(s) 617, 665, 918, 1173, 1424, 1443
MaeII ACGT 3 cut(s) 494, 1105, 1147
MaeIII GTNAC 5 cut(s) 689, 925, 946, 1125, 1445
MalI GATC 4 cut(s) 1011, 1182, 1556, 1806
MboI GATC 4 cut(s) 1009, 1180, 1554, 1804
MboII GAAGA 6 cut(s) 383, 933, 1079, 1082, 1508, 1574
MfeI CAATTG 1 cut(s) 697
MlyI GAGTC 2 cut(s) 1087, 1364
MmeI TCCRAC 2 cut(s) 1014, 1385
Mph1103I ATGCAT 1 cut(s) 1302
MroI TCCGGA 2 cut(s) 1205, 1466
MseI TTAA 6 cut(s) 282, 341, 440, 798, 1419, 1629
MslI CAYNNNNRTG 1 cut(s) 1299
MspA1I CMGCKG 1 cut(s) 29
MspCI CTTAAG 1 cut(s) 439
MspI CCGG 3 cut(s) 630, 1206, 1467
MspR9I CCNGG 3 cut(s) 251, 708, 1571
MunI CAATTG 1 cut(s) 697
Mva1269I GAATGC 2 cut(s) 592, 1368
MvaI CCWGG 3 cut(s) 251, 708, 1571
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 5 cut(s) 161, 209, 1297, 1537, 1679
NdeI CATATG 2 cut(s) 730, 1522
NdeII GATC 4 cut(s) 1009, 1180, 1554, 1804
NlaIV GGNNCC 1 cut(s) 1698
NmeAIII GCCGAG 1 cut(s) 1699
NmuCI GTSAC 1 cut(s) 946
NruI TCGCGA 1 cut(s) 308
NsiI ATGCAT 1 cut(s) 1302
NspI RCATGY 4 cut(s) 1269, 1300, 1304, 1581
PaeI GCATGC 1 cut(s) 1581
PasI CCCWGGG 1 cut(s) 707
PceI AGGCCT 1 cut(s) 249
PciI ACATGT 1 cut(s) 1265
PctI GAATGC 2 cut(s) 592, 1368
PfeI GAWTC 6 cut(s) 149, 216, 809, 938, 1721, 1785
PflMI CCANNNNNTGG 2 cut(s) 531, 1021
PfoI TCCNGGA 1 cut(s) 1569
PkrI GCNGC 5 cut(s) 727, 912, 1192, 1648, 1684
PleI GAGTC 2 cut(s) 1087, 1363
PpsI GAGTC 2 cut(s) 1087, 1363
PscI ACATGT 1 cut(s) 1265
PshBI ATTAAT 1 cut(s) 798
Psp1406I AACGTT 1 cut(s) 1105
Psp6I CCWGG 3 cut(s) 249, 706, 1569
PspGI CCWGG 3 cut(s) 249, 706, 1569
PspN4I GGNNCC 1 cut(s) 1698
PspPI GGNCC 3 cut(s) 1199, 1344, 1696
PsrI GAACNNNNNNTAC 2 cut(s) 1764, 1796
PstNI CAGNNNCTG 1 cut(s) 1123
PvuII CAGCTG 1 cut(s) 29
RruI TCGCGA 1 cut(s) 308
RsaI GTAC 5 cut(s) 136, 560, 703, 1059, 1515
RsaNI GTAC 5 cut(s) 135, 559, 702, 1058, 1514
RseI CAYNNNNRTG 1 cut(s) 1299
SaqAI TTAA 6 cut(s) 282, 341, 440, 798, 1419, 1629
SatI GCNGC 5 cut(s) 726, 911, 1191, 1647, 1683
Sau3AI GATC 4 cut(s) 1009, 1180, 1554, 1804
Sau96I GGNCC 3 cut(s) 1199, 1344, 1696
SchI GAGTC 2 cut(s) 1087, 1364
ScrFI CCNGG 3 cut(s) 251, 708, 1571
SfaNI GCATC 3 cut(s) 212, 1122, 1576
SfcI CTRYAG 1 cut(s) 5
SinI GGWCC 1 cut(s) 1199
SmiMI CAYNNNNRTG 1 cut(s) 1299
SmlI CTYRAG 1 cut(s) 439
SmoI CTYRAG 1 cut(s) 439
SpeI ACTAGT 2 cut(s) 664, 1423
SphI GCATGC 1 cut(s) 1581
SseBI AGGCCT 1 cut(s) 249
SsiI CCGC 1 cut(s) 726
SspMI CTAG 6 cut(s) 617, 665, 918, 1173, 1424, 1443
StuI AGGCCT 1 cut(s) 249
StyD4I CCNGG 3 cut(s) 249, 706, 1569
TaaI ACNGT 3 cut(s) 9, 563, 1518
TaiI ACGT 3 cut(s) 497, 1108, 1150
TaqI TCGA 2 cut(s) 1008, 1783
TatI WGTACW 2 cut(s) 558, 1057
TauI GCSGC 1 cut(s) 728
TfiI GAWTC 6 cut(s) 149, 216, 809, 938, 1721, 1785
Tru1I TTAA 6 cut(s) 282, 341, 440, 798, 1419, 1629
Tru9I TTAA 6 cut(s) 282, 341, 440, 798, 1419, 1629
TscAI CASTG 6 cut(s) 240, 859, 951, 1192, 1293, 1498
TseFI GTSAC 1 cut(s) 946
TseI GCWGC 4 cut(s) 910, 1190, 1646, 1682
Tsp45I GTSAC 1 cut(s) 946
TspDTI ATGAA 6 cut(s) 132, 208, 488, 791, 848, 1761
TspRI CASTG 6 cut(s) 240, 859, 951, 1192, 1293, 1498
Van91I CCANNNNNTGG 2 cut(s) 531, 1021
Vha464I CTTAAG 1 cut(s) 439
VpaK11BI GGWCC 1 cut(s) 1199
VspI ATTAAT 1 cut(s) 798
XagI CCTNNNNNAGG 1 cut(s) 903
XapI RAATTY 3 cut(s) 301, 507, 1651
XceI RCATGY 4 cut(s) 1269, 1300, 1304, 1581
XspI CTAG 6 cut(s) 617, 665, 918, 1173, 1424, 1443
Zsp2I ATGCAT 1 cut(s) 1302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.