Rmu_sc0004701.1_g000003

Protein UPSTREAM OF FLC isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004701.1
OG0006878
Physical Location & Seq
Reverse (-)
10805 .. 12212
1408 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1035 bp
atggagggtaggatgaaaaagtatagacaagtgagtcctgagagggctaaagtgtggaccgagaagtcgccgaaataccaccagaatcggaaagttccggtggtttattacctctgccggaaccgacagcttgaacaccctcatttcatggaggttactgtaagctcttctcaaggtctctacctcagagatgtgattaataagcttaatgctctgaggggcagagggatagcatccatgtattcatggtcttctaagagaagctataagaatgggtatgtttggcatgatctcagtgacgatgatgtgattcttccagcccacggagacgagtacgtcctcaaaggttctgagatctttgatgaatccaattcagatcgattcagtccgatagcaaatgtcaaaatccagaacttgaaacaattaccggaaccaacatcttctagaagccaaggtgattcttcatcgtcttccagtttgaatggaaaggagacaaagcagtcccatgaagatgagatctctcctccagttgaacgaccaggaggctcttccagtgtgtcttcagagtctggaaagaattcttcttggggtggttctctgagcttgacagagtacaaggtttacaagagtgatggtttagctgatgcttctacacagactgaagaaaatgtgaacaaacttaaagctctagaaacatgtacaaggggtgtttccacagatgatgggtcactagaacctgattgcagttattaccaagaccgaattccatgtttgaaagagaattctgagatttgcagtgattctgtttcccctcctccatcttcctcaagtgcatcttcatcgggtgggaagactgaaactttagaatcacttattagggctgatgttagtaaaattaacagttttagaattcttgaagaggaagagcttcgaatgccaaacaatgcaaggctcaaggctagtaatgtacttatgcaactcatttcatgtgggtcaatatcagtgaaggtagaaagaaacagaaactggatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF966

Protein Analysis

344

Amino Acids

38.32

Weight (kDa)

6.63

Isoelectric Point (pI)

57.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOK PF06136 32 - 120 7e-50 SOSEKI protein DIX-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 4 cut(s) 33, 64, 335, 499
AcsI RAATTY 4 cut(s) 577, 762, 781, 909
AcuI CTGAAG 2 cut(s) 546, 681
AfaI GTAC 4 cut(s) 335, 614, 700, 969
AfiI CCNNNNNNNGG 1 cut(s) 323
AflIII ACRYGT 1 cut(s) 695
AgsI TTSAA 6 cut(s) 134, 418, 481, 533, 775, 917
AjnI CCWGG 1 cut(s) 538
AjuI GAANNNNNNNTTGG 2 cut(s) 747, 779
AluBI AGCT 8 cut(s) 130, 165, 205, 264, 603, 641, 686, 928
AluI AGCT 8 cut(s) 130, 165, 205, 264, 603, 641, 686, 928
Alw26I GTCTC 3 cut(s) 182, 321, 485
AlwNI CAGNNNCTG 2 cut(s) 569, 1026
ApoI RAATTY 4 cut(s) 577, 762, 781, 909
AseI ATTAAT 1 cut(s) 198
Asp700I GAANNNNTTC 2 cut(s) 577, 927
AspS9I GGNCC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 467
AsuII TTCGAA 1 cut(s) 931
AvaII GGWCC 1 cut(s) 57
BbsI GAAGAC 4 cut(s) 243, 462, 552, 857
BccI CCATC 3 cut(s) 626, 716, 826
BcgI CGANNNNNNTGC 2 cut(s) 822, 856
BciT130I CCWGG 1 cut(s) 540
BcoDI GTCTC 3 cut(s) 182, 321, 485
BfaI CTAG 4 cut(s) 444, 689, 731, 960
BglII AGATCT 2 cut(s) 354, 516
Bme1390I CCNGG 1 cut(s) 540
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 2 cut(s) 122, 432
BmrFI CCNGG 1 cut(s) 540
BmsI GCATC 3 cut(s) 242, 634, 842
BpiI GAAGAC 4 cut(s) 243, 462, 552, 857
BpmI CTGGAG 1 cut(s) 510
Bpu14I TTCGAA 1 cut(s) 931
BpuEI CTTGAG 3 cut(s) 156, 811, 938
Bsa29I ATCGAT 1 cut(s) 379
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 2 cut(s) 322, 451
BsaWI WCCGGW 2 cut(s) 97, 427
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse1I ACTGG 4 cut(s) 474, 527, 552, 1031
BseBI CCWGG 1 cut(s) 540
BseCI ATCGAT 1 cut(s) 379
BseDI CCNNGG 2 cut(s) 322, 451
BseGI GGATG 2 cut(s) 18, 233
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMII CTCAG 7 cut(s) 30, 199, 206, 307, 342, 590, 777
BseNI ACTGG 4 cut(s) 474, 527, 552, 1031
BseRI GAGGAG 2 cut(s) 513, 804
BshVI ATCGAT 1 cut(s) 379
BsiSI CCGG 3 cut(s) 98, 118, 428
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 3 cut(s) 182, 321, 485
BsmBI CGTCTC 1 cut(s) 321
BsmFI GGGAC 1 cut(s) 487
BsmI GAATGC 1 cut(s) 939
Bso31I GGTCTC 1 cut(s) 182
Bsp119I TTCGAA 1 cut(s) 931
Bsp1407I TGTACA 1 cut(s) 698
Bsp143I GATC 4 cut(s) 289, 354, 376, 516
BspCNI CTCAG 7 cut(s) 31, 198, 207, 306, 343, 591, 778
BspDI ATCGAT 1 cut(s) 379
BspLI GGNNCC 2 cut(s) 122, 432
BspQI GCTCTTC 3 cut(s) 172, 553, 918
BspT104I TTCGAA 1 cut(s) 931
BspTNI GGTCTC 1 cut(s) 182
BsrGI TGTACA 1 cut(s) 698
BsrI ACTGG 4 cut(s) 474, 527, 552, 1031
BssECI CCNNGG 2 cut(s) 322, 451
BssMI GATC 4 cut(s) 289, 354, 376, 516
BssT1I CCWWGG 1 cut(s) 451
Bst2UI CCWGG 1 cut(s) 540
Bst4CI ACNGT 2 cut(s) 160, 902
Bst6I CTCTTC 4 cut(s) 172, 553, 912, 918
BstAUI TGTACA 1 cut(s) 698
BstBI TTCGAA 1 cut(s) 931
BstDEI CTNAG 8 cut(s) 39, 185, 215, 255, 293, 351, 599, 786
BstDSI CCRYGG 1 cut(s) 322
BstF5I GGATG 2 cut(s) 18, 233
BstKTI GATC 4 cut(s) 292, 357, 379, 519
BstMAI GTCTC 3 cut(s) 182, 321, 485
BstMBI GATC 4 cut(s) 289, 354, 376, 516
BstMWI GCNNNNNNNGC 1 cut(s) 934
BstNI CCWGG 1 cut(s) 540
BstNSI RCATGY 1 cut(s) 699
BstSCI CCNGG 1 cut(s) 538
BstV2I GAAGAC 4 cut(s) 243, 462, 552, 857
BstX2I RGATCY 2 cut(s) 354, 516
BstYI RGATCY 2 cut(s) 354, 516
Bsu15I ATCGAT 1 cut(s) 379
BsuTUI ATCGAT 1 cut(s) 379
BtgI CCRYGG 1 cut(s) 322
BtsCI GGATG 2 cut(s) 18, 233
BtsI GCAGTG 1 cut(s) 802
BtsIMutI CAGTG 4 cut(s) 301, 559, 802, 1008
CaiI CAGNNNCTG 2 cut(s) 569, 1026
Cfr13I GGNCC 1 cut(s) 57
ClaI ATCGAT 1 cut(s) 379
Csp6I GTAC 4 cut(s) 334, 613, 699, 968
CviAII CATG 8 cut(s) 148, 238, 246, 287, 506, 696, 768, 987
CviQI GTAC 4 cut(s) 334, 613, 699, 968
DdeI CTNAG 8 cut(s) 39, 185, 215, 255, 293, 351, 599, 786
DpnI GATC 4 cut(s) 291, 356, 378, 518
DpnII GATC 4 cut(s) 289, 354, 376, 516
DrdI GACNNNNNNGTC 4 cut(s) 33, 64, 335, 499
DseDI GACNNNNNNGTC 4 cut(s) 33, 64, 335, 499
Eam1104I CTCTTC 4 cut(s) 172, 553, 912, 918
EarI CTCTTC 4 cut(s) 172, 553, 912, 918
Eco130I CCWWGG 1 cut(s) 451
Eco31I GGTCTC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 57
Eco57I CTGAAG 2 cut(s) 546, 681
EcoRI GAATTC 4 cut(s) 577, 762, 781, 909
EcoRII CCWGG 1 cut(s) 538
EcoT14I CCWWGG 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 451
Esp3I CGTCTC 1 cut(s) 321
FaeI CATG 8 cut(s) 151, 241, 249, 290, 509, 699, 771, 990
FalI AAGNNNNNCTT 2 cut(s) 820, 852
FaqI GGGAC 1 cut(s) 487
FatI CATG 8 cut(s) 147, 237, 245, 286, 505, 695, 767, 986
FokI GGATG 2 cut(s) 25, 220
FspBI CTAG 4 cut(s) 444, 689, 731, 960
GsuI CTGGAG 1 cut(s) 510
HapII CCGG 3 cut(s) 98, 118, 428
Hin1II CATG 8 cut(s) 151, 241, 249, 290, 509, 699, 771, 990
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 9 cut(s) 34, 85, 310, 365, 381, 458, 566, 800, 866
HpaII CCGG 3 cut(s) 98, 118, 428
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 3 cut(s) 57, 622, 673
Hpy188I TCNGA 9 cut(s) 90, 188, 216, 352, 376, 390, 565, 600, 787
Hpy188III TCNNGA 6 cut(s) 38, 409, 444, 570, 689, 914
Hpy8I GTNNAC 3 cut(s) 57, 622, 673
HpyAV CCTTC 1 cut(s) 1000
HpyCH4III ACNGT 2 cut(s) 160, 902
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 5 cut(s) 744, 795, 833, 947, 976
HpyF10VI GCNNNNNNNGC 1 cut(s) 934
HpyF3I CTNAG 8 cut(s) 39, 185, 215, 255, 293, 351, 599, 786
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 8 cut(s) 151, 241, 249, 290, 509, 699, 771, 990
Kzo9I GATC 4 cut(s) 289, 354, 376, 516
LguI GCTCTTC 3 cut(s) 172, 553, 918
LweI GCATC 3 cut(s) 242, 634, 842
MaeI CTAG 4 cut(s) 444, 689, 731, 960
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 3 cut(s) 154, 296, 726
MalI GATC 4 cut(s) 291, 356, 378, 518
MboI GATC 4 cut(s) 289, 354, 376, 516
MflI RGATCY 2 cut(s) 354, 516
MluCI AATT 7 cut(s) 370, 422, 577, 762, 781, 894, 909
MlyI GAGTC 2 cut(s) 43, 575
MroXI GAANNNNTTC 2 cut(s) 577, 927
MseI TTAA 4 cut(s) 198, 207, 681, 897
MslI CAYNNNNRTG 1 cut(s) 510
MspI CCGG 3 cut(s) 98, 118, 428
MspR9I CCNGG 1 cut(s) 540
Mva1269I GAATGC 1 cut(s) 939
MvaI CCWGG 1 cut(s) 540
MwoI GCNNNNNNNGC 1 cut(s) 934
NdeII GATC 4 cut(s) 289, 354, 376, 516
NlaIII CATG 8 cut(s) 151, 241, 249, 290, 509, 699, 771, 990
NlaIV GGNNCC 2 cut(s) 122, 432
NmuCI GTSAC 2 cut(s) 296, 726
NspI RCATGY 1 cut(s) 699
NspV TTCGAA 1 cut(s) 931
PciI ACATGT 1 cut(s) 695
PciSI GCTCTTC 3 cut(s) 172, 553, 918
PctI GAATGC 1 cut(s) 939
PdmI GAANNNNTTC 2 cut(s) 577, 927
PfeI GAWTC 7 cut(s) 85, 310, 365, 381, 458, 800, 866
PleI GAGTC 2 cut(s) 42, 574
PpsI GAGTC 2 cut(s) 42, 574
PscI ACATGT 1 cut(s) 695
PshBI ATTAAT 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 538
PspGI CCWGG 1 cut(s) 538
PspN4I GGNNCC 2 cut(s) 122, 432
PspPI GGNCC 1 cut(s) 57
PstNI CAGNNNCTG 2 cut(s) 569, 1026
PsuI RGATCY 2 cut(s) 354, 516
RsaI GTAC 4 cut(s) 335, 614, 700, 969
RsaNI GTAC 4 cut(s) 334, 613, 699, 968
RseI CAYNNNNRTG 1 cut(s) 510
SapI GCTCTTC 3 cut(s) 172, 553, 918
SaqAI TTAA 4 cut(s) 198, 207, 681, 897
Sau3AI GATC 4 cut(s) 289, 354, 376, 516
Sau96I GGNCC 1 cut(s) 57
SchI GAGTC 2 cut(s) 43, 575
ScrFI CCNGG 1 cut(s) 540
SfaNI GCATC 3 cut(s) 242, 634, 842
SfuI TTCGAA 1 cut(s) 931
SinI GGWCC 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 510
SmlI CTYRAG 3 cut(s) 171, 826, 953
SmoI CTYRAG 3 cut(s) 171, 826, 953
Sse9I AATT 7 cut(s) 370, 422, 577, 762, 781, 894, 909
SspMI CTAG 4 cut(s) 444, 689, 731, 960
StyD4I CCNGG 1 cut(s) 538
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 2 cut(s) 160, 902
TaiI ACGT 1 cut(s) 339
TaqI TCGA 2 cut(s) 379, 931
TaqII GACCGA 2 cut(s) 74, 774
TasI AATT 7 cut(s) 370, 422, 577, 762, 781, 894, 909
TatI WGTACW 3 cut(s) 612, 698, 967
TfiI GAWTC 7 cut(s) 85, 310, 365, 381, 458, 800, 866
Tru1I TTAA 4 cut(s) 198, 207, 681, 897
Tru9I TTAA 4 cut(s) 198, 207, 681, 897
TscAI CASTG 4 cut(s) 301, 559, 802, 1008
TseFI GTSAC 2 cut(s) 296, 726
Tsp45I GTSAC 2 cut(s) 296, 726
TspDTI ATGAA 8 cut(s) 29, 136, 234, 378, 453, 522, 828, 975
TspGWI ACGGA 1 cut(s) 339
TspRI CASTG 4 cut(s) 301, 559, 802, 1008
VpaK11BI GGWCC 1 cut(s) 57
VspI ATTAAT 1 cut(s) 198
XapI RAATTY 4 cut(s) 577, 762, 781, 909
XbaI TCTAGA 2 cut(s) 443, 688
XceI RCATGY 1 cut(s) 699
XmnI GAANNNNTTC 2 cut(s) 577, 927
XspI CTAG 4 cut(s) 444, 689, 731, 960
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.