Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004836.1

Orthogroup ID

OG0017695

Physical Location & Seq

Genomic Coordinates Forward (+)

26386 .. 29619

Gene Structure 3234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004836.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgattcctcctcttcttcaagtttgtgtgtggaattctgatggatgggaaaaacagaagagcagattcttgcagcttccagctaggagaacaccatcttcagtgccagatactcgcgttcattttcatcaggatcaggcacatttcttggttgtgcatgagactcagctggccatatttgaaacaacaaaactagaatgtgtaaggcagagagagacttggcctgaaggagaggtaattgatcgtgcagtgttatggaagaaagcttgtgtacctaaaaatgggaagatagatgaggaggtgacaccaatagcatcaaaaattgatgaattgctagagaagaagagtaagggtgagctagacatctcaggaagtgatgatgttttgactcaagcactagaaactctgaacacctggtgggcggcaaagagtcggaactcatatacccaagagcaacttgatgaggtgcggattgaagcggctaactacttgcagactttgctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

168

Amino Acids

19.34

Weight (kDa)

5.43

Isoelectric Point (pI)

34.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29170
rosa_chinensis	RchiOBHm_Chr4g0409071
rosa_multiflora	Rmu_sc0004836.1_g000006
rosa_rugosa	Rorug02G0304200 Rorug05G0382100 Rorug05G0582100
rosa_samantha	Rh2DG044500 Rh4BG153400 Rh5CG359300 Rh6AG188900 Rh6AG189900
rosa_wichuraiana	Rw1G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	117
AciI	CCGC	3 cut(s)	422, 469, 479
AclWI	GGATC	1 cut(s)	141
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	2 cut(s)	84, 246
AdeI	CACNNNGTG	1 cut(s)	417
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	3 cut(s)	20, 182, 476
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	5 cut(s)	76, 83, 169, 266, 358
AluI	AGCT	5 cut(s)	76, 83, 169, 266, 358
Alw26I	GTCTC	2 cut(s)	155, 209
AlwI	GGATC	1 cut(s)	141
AoxI	GGCC	2 cut(s)	171, 221
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	313, 365
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BalI	TGGCCA	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	3 cut(s)	35, 39, 103
BciT130I	CCWGG	1 cut(s)	415
BcoDI	GTCTC	2 cut(s)	155, 209
BfaI	CTAG	5 cut(s)	84, 194, 335, 359, 398
BfmI	CTRYAG	1 cut(s)	503
BisI	GCNGC	3 cut(s)	74, 423, 480
BlsI	GCNGC	3 cut(s)	75, 424, 481
Bme1390I	CCNGG	1 cut(s)	415
BmrFI	CCNGG	1 cut(s)	415
BmsI	GCATC	1 cut(s)	323
BpuEI	CTTGAG	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	415
BseGI	GGATG	1 cut(s)	50
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMII	CTCAG	2 cut(s)	179, 381
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	2 cut(s)	173, 223
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	155, 209
BsnI	GGCC	2 cut(s)	173, 223
Bsp143I	GATC	2 cut(s)	133, 241
BspACI	CCGC	3 cut(s)	422, 469, 479
BspANI	GGCC	2 cut(s)	173, 223
BspCNI	CTCAG	2 cut(s)	178, 380
BspFNI	CGCG	1 cut(s)	117
BspPI	GGATC	1 cut(s)	141
BspQI	GCTCTTC	1 cut(s)	53
BssMI	GATC	2 cut(s)	133, 241
Bst2UI	CCWGG	1 cut(s)	415
Bst6I	CTCTTC	3 cut(s)	18, 53, 338
BstAPI	GCANNNNNTGC	1 cut(s)	499
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	2 cut(s)	165, 367
BstF5I	GGATG	1 cut(s)	50
BstFNI	CGCG	1 cut(s)	117
BstKTI	GATC	2 cut(s)	136, 244
BstMAI	GTCTC	2 cut(s)	155, 209
BstMBI	GATC	2 cut(s)	133, 241
BstMWI	GCNNNNNNNGC	1 cut(s)	499
BstNI	CCWGG	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	413
BstSFI	CTRYAG	1 cut(s)	503
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	173, 223
BtsCI	GGATG	1 cut(s)	50
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	108, 255
Cac8I	GCNNGC	1 cut(s)	171
CsiI	ACCWGGT	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	8 cut(s)	76, 83, 169, 173, 223, 266, 358, 482
CviKI_1	RGCY	8 cut(s)	76, 83, 169, 173, 223, 266, 358, 482
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	2 cut(s)	165, 367
DpnI	GATC	2 cut(s)	135, 243
DpnII	GATC	2 cut(s)	133, 241
DraIII	CACNNNGTG	1 cut(s)	417
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	3 cut(s)	18, 53, 338
EarI	CTCTTC	3 cut(s)	18, 53, 338
Eco57I	CTGAAG	2 cut(s)	84, 246
EcoRI	GAATTC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	413
FaeI	CATG	1 cut(s)	161
FaiI	YATR	6 cut(s)	159, 176, 256, 442, 444, 505
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FatI	CATG	1 cut(s)	157
Fnu4HI	GCNGC	3 cut(s)	74, 423, 480
FokI	GGATG	1 cut(s)	57
Fsp4HI	GCNGC	3 cut(s)	74, 423, 480
FspBI	CTAG	5 cut(s)	84, 194, 335, 359, 398
GluI	GCNGC	3 cut(s)	74, 423, 480
HaeIII	GGCC	2 cut(s)	173, 223
Hin1II	CATG	1 cut(s)	161
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	5 cut(s)	4, 66, 163, 388, 430
HphI	GGTGA	2 cut(s)	313, 365
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	3 cut(s)	40, 408, 435
Hpy188III	TCNNGA	2 cut(s)	131, 369
Hpy8I	GTNNAC	1 cut(s)	272
HpyAV	CCTTC	1 cut(s)	221
HpyCH4V	TGCA	4 cut(s)	73, 157, 248, 493
HpyF10VI	GCNNNNNNNGC	1 cut(s)	499
HpyF3I	CTNAG	2 cut(s)	165, 367
Hsp92II	CATG	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	133, 241
LguI	GCTCTTC	1 cut(s)	53
LpnPI	CCDG	9 cut(s)	93, 116, 120, 122, 155, 237, 354, 400, 427
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	323
MabI	ACCWGGT	1 cut(s)	413
MaeI	CTAG	5 cut(s)	84, 194, 335, 359, 398
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	2 cut(s)	135, 243
MboI	GATC	2 cut(s)	133, 241
MboII	GAAGA	8 cut(s)	5, 8, 70, 90, 271, 298, 352, 355
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	4 cut(s)	34, 237, 321, 329
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	3 cut(s)	157, 382, 439
MmeI	TCCRAC	1 cut(s)	413
MnlI	CCTC	6 cut(s)	18, 21, 226, 289, 292, 457
Mox20I	TGGCCA	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	173
Msp20I	TGGCCA	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	169
MspR9I	CCNGG	1 cut(s)	415
MvaI	CCWGG	1 cut(s)	415
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	499
NdeII	GATC	2 cut(s)	133, 241
NlaIII	CATG	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	301
PciSI	GCTCTTC	1 cut(s)	53
PfeI	GAWTC	2 cut(s)	4, 66
PkrI	GCNGC	3 cut(s)	75, 424, 481
PleI	GAGTC	3 cut(s)	157, 382, 438
PpsI	GAGTC	3 cut(s)	157, 382, 438
Psp6I	CCWGG	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	413
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SapI	GCTCTTC	1 cut(s)	53
SatI	GCNGC	3 cut(s)	74, 423, 480
Sau3AI	GATC	2 cut(s)	133, 241
SchI	GAGTC	3 cut(s)	157, 382, 439
ScrFI	CCNGG	1 cut(s)	415
SexAI	ACCWGGT	1 cut(s)	413
SfaNI	GCATC	1 cut(s)	323
SfcI	CTRYAG	1 cut(s)	503
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	4 cut(s)	34, 237, 321, 329
SsiI	CCGC	3 cut(s)	422, 469, 479
SspMI	CTAG	5 cut(s)	84, 194, 335, 359, 398
StyD4I	CCNGG	1 cut(s)	413
TasI	AATT	4 cut(s)	34, 237, 321, 329
TauI	GCSGC	2 cut(s)	425, 482
TfiI	GAWTC	2 cut(s)	4, 66
TscAI	CASTG	2 cut(s)	108, 255
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	3 cut(s)	110, 116, 342
TspRI	CASTG	2 cut(s)	108, 255
XapI	RAATTY	1 cut(s)	34
XspI	CTAG	5 cut(s)	84, 194, 335, 359, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.