Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0017695

Physical Location & Seq

Genomic Coordinates Forward (+)

33971323 .. 33979573

Gene Structure 8251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG189900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAAGAAGTCGAGGGCCTTATCGTTGTCACCAGATGCAGTTTTTGAGCCCTACAAGGTCAGCAAAGTTGATCTTCTTGCACAAAGTTGCTCTTCATGGCTCTTAATTTGGGGTGCTCGGCACTTGGTGTCTAGTAGCTTAACACATTGGGGTTCCTGCCTACACATGCATCCGATTGGGTTTCATCCTTACCCCCTGCTCAGGTTAAGAGCAAGCTTAAAGGTCACTCTAAAAGTTTCATCAGGAGCAGATGCTCAGGTTTGTGTGTGGAATTCTGATGGATGGGAAAAACAAAAGAGCAGATTCTTGCAGCTTCCAGCTGGGAGAACACCATCTTCAGTGTCAGATACTCGCGTTCAGTTTCATCAGGAGCAGGCACATTTCTTGGTTGTGCATGAGACTCAGCTAGCCATATTTGAAACAACAAAACTAGAATGTGTAAAGCAGCTAAGAAGTAGCAAATTAGCACAAGCAGAGGAAGAGGAGGAGGACGAAGACATAGAGGGCGATGATGTTGACATTGGCTTCAGCTTTAAAGGCCAGTTGCCGCAAAATCAGTTGACTGGTGGCTGGGTCTATTATTCAAATCTCCAAAAATGCTTGAAGGTGTTGGTGCATTTCAAAATCTACCAATGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

213

Amino Acids

24.26

Weight (kDa)

7.11

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29170
rosa_chinensis	RchiOBHm_Chr4g0409071
rosa_multiflora	Rmu_sc0004836.1_g000006
rosa_rugosa	Rorug02G0304200 Rorug05G0382100 Rorug05G0582100
rosa_samantha	Rh2DG044500 Rh4BG153400 Rh5CG359300 Rh6AG188900 Rh6AG189900
rosa_wichuraiana	Rw1G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	354
AciI	CCGC	1 cut(s)	548
AcsI	RAATTY	1 cut(s)	271
AcuI	CTGAAG	2 cut(s)	321, 511
AdeI	CACNNNGTG	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	201
AgsI	TTSAA	4 cut(s)	419, 585, 604, 622
AluBI	AGCT	7 cut(s)	138, 216, 313, 320, 406, 448, 531
AluI	AGCT	7 cut(s)	138, 216, 313, 320, 406, 448, 531
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	392
AoxI	GGCC	2 cut(s)	15, 538
ApeKI	GCWGC	2 cut(s)	310, 445
ApoI	RAATTY	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	15
AsuHPI	GGTGA	1 cut(s)	21
AsuNHI	GCTAGC	1 cut(s)	406
BaeI	ACNNNNGTAYC	2 cut(s)	339, 372
BanII	GRGCYC	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	322, 457
BccI	CCATC	3 cut(s)	272, 276, 340
BcoDI	GTCTC	1 cut(s)	392
BfaI	CTAG	3 cut(s)	132, 407, 431
BisI	GCNGC	3 cut(s)	311, 446, 548
BlsI	GCNGC	3 cut(s)	312, 447, 549
BmgT120I	GGNCC	1 cut(s)	15
BmiI	GGNNCC	1 cut(s)	154
BmsI	GCATC	3 cut(s)	25, 178, 241
BmtI	GCTAGC	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	501
Bpu10I	CCTNAGC	2 cut(s)	200, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse1I	ACTGG	2 cut(s)	541, 568
BseGI	GGATG	3 cut(s)	169, 184, 287
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMII	CTCAG	3 cut(s)	214, 269, 416
BseNI	ACTGG	2 cut(s)	541, 568
BseRI	GAGGAG	2 cut(s)	497, 500
BseXI	GCAGC	2 cut(s)	322, 457
BseYI	CCCAGC	2 cut(s)	320, 570
Bsh1236I	CGCG	1 cut(s)	354
BshFI	GGCC	2 cut(s)	17, 540
BsiHKAI	GWGCWC	1 cut(s)	118
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	392
BsnI	GGCC	2 cut(s)	17, 540
Bsp1286I	GDGCHC	2 cut(s)	51, 118
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	1 cut(s)	548
BspANI	GGCC	2 cut(s)	17, 540
BspCNI	CTCAG	3 cut(s)	213, 268, 415
BspFNI	CGCG	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	154
BspOI	GCTAGC	1 cut(s)	410
BspQI	GCTCTTC	1 cut(s)	97
BsrI	ACTGG	2 cut(s)	541, 568
BssMI	GATC	1 cut(s)	70
Bst6I	CTCTTC	2 cut(s)	97, 474
BstC8I	GCNNGC	3 cut(s)	214, 375, 408
BstDEI	CTNAG	4 cut(s)	200, 255, 402, 449
BstF5I	GGATG	3 cut(s)	169, 184, 287
BstFNI	CGCG	1 cut(s)	354
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	1 cut(s)	537
BstNSI	RCATGY	1 cut(s)	169
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	2 cut(s)	322, 457
BstV2I	GAAGAC	1 cut(s)	501
BsuRI	GGCC	2 cut(s)	17, 540
BtgZI	GCGATG	1 cut(s)	522
BtsCI	GGATG	3 cut(s)	169, 184, 287
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	3 cut(s)	214, 375, 408
Cfr13I	GGNCC	1 cut(s)	15
CviAII	CATG	3 cut(s)	96, 166, 395
DdeI	CTNAG	4 cut(s)	200, 255, 402, 449
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
DraI	TTTAAA	1 cut(s)	535
DraIII	CACNNNGTG	1 cut(s)	127
Eam1104I	CTCTTC	2 cut(s)	97, 474
EarI	CTCTTC	2 cut(s)	97, 474
Eco24I	GRGCYC	1 cut(s)	51
Eco57I	CTGAAG	2 cut(s)	321, 511
EcoO109I	RGGNCCY	1 cut(s)	15
EcoRI	GAATTC	1 cut(s)	271
EcoT22I	ATGCAT	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	51
FaeI	CATG	3 cut(s)	99, 169, 398
FaiI	YATR	5 cut(s)	97, 167, 396, 413, 500
FalI	AAGNNNNNCTT	4 cut(s)	57, 89, 76, 108
FatI	CATG	3 cut(s)	95, 165, 394
Fnu4HI	GCNGC	3 cut(s)	311, 446, 548
FokI	GGATG	3 cut(s)	156, 171, 294
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	3 cut(s)	311, 446, 548
FspBI	CTAG	3 cut(s)	132, 407, 431
GluI	GCNGC	3 cut(s)	311, 446, 548
GsaI	CCCAGC	2 cut(s)	324, 574
HaeIII	GGCC	2 cut(s)	17, 540
Hin1II	CATG	3 cut(s)	99, 169, 398
HincII	GTYRAC	2 cut(s)	517, 561
HindII	GTYRAC	2 cut(s)	517, 561
HindIII	AAGCTT	1 cut(s)	214
HinfI	GANTC	2 cut(s)	303, 400
HphI	GGTGA	1 cut(s)	21
Hpy166II	GTNNAC	2 cut(s)	517, 561
Hpy188I	TCNGA	3 cut(s)	174, 277, 346
Hpy188III	TCNNGA	2 cut(s)	243, 368
Hpy8I	GTNNAC	2 cut(s)	517, 561
HpyAV	CCTTC	1 cut(s)	598
HpyCH4V	TGCA	6 cut(s)	38, 80, 169, 310, 394, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	537
HpyF3I	CTNAG	4 cut(s)	200, 255, 402, 449
Hsp92II	CATG	3 cut(s)	99, 169, 398
Kzo9I	GATC	1 cut(s)	70
LguI	GCTCTTC	1 cut(s)	97
LmnI	GCTCC	2 cut(s)	245, 370
Lsp1109I	GCAGC	2 cut(s)	322, 457
LweI	GCATC	3 cut(s)	25, 178, 241
MaeI	CTAG	3 cut(s)	132, 407, 431
MaeIII	GTNAC	2 cut(s)	27, 223
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	6 cut(s)	16, 65, 84, 327, 491, 506
MhlI	GDGCHC	2 cut(s)	51, 118
MluCI	AATT	3 cut(s)	105, 271, 461
MlyI	GAGTC	1 cut(s)	394
MnlI	CCTC	6 cut(s)	6, 469, 475, 478, 481, 496
Mph1103I	ATGCAT	1 cut(s)	171
MseI	TTAA	5 cut(s)	104, 140, 206, 218, 534
MspA1I	CMGCKG	1 cut(s)	320
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	1 cut(s)	537
NdeII	GATC	1 cut(s)	70
NheI	GCTAGC	1 cut(s)	406
NlaIII	CATG	3 cut(s)	99, 169, 398
NlaIV	GGNNCC	1 cut(s)	154
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	2 cut(s)	27, 223
NsiI	ATGCAT	1 cut(s)	171
NspI	RCATGY	1 cut(s)	169
PciSI	GCTCTTC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	303
PkrI	GCNGC	3 cut(s)	312, 447, 549
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PspFI	CCCAGC	2 cut(s)	320, 570
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	15
PvuII	CAGCTG	1 cut(s)	320
SapI	GCTCTTC	1 cut(s)	97
SaqAI	TTAA	5 cut(s)	104, 140, 206, 218, 534
SatI	GCNGC	3 cut(s)	311, 446, 548
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	1 cut(s)	15
SchI	GAGTC	1 cut(s)	394
SduI	GDGCHC	2 cut(s)	51, 118
SfaNI	GCATC	3 cut(s)	25, 178, 241
Sse9I	AATT	3 cut(s)	105, 271, 461
SsiI	CCGC	1 cut(s)	548
SspMI	CTAG	3 cut(s)	132, 407, 431
TaqI	TCGA	1 cut(s)	11
TasI	AATT	3 cut(s)	105, 271, 461
TauI	GCSGC	1 cut(s)	550
TfiI	GAWTC	1 cut(s)	303
Tru1I	TTAA	5 cut(s)	104, 140, 206, 218, 534
Tru9I	TTAA	5 cut(s)	104, 140, 206, 218, 534
TscAI	CASTG	1 cut(s)	345
TseFI	GTSAC	2 cut(s)	27, 223
TseI	GCWGC	2 cut(s)	310, 445
Tsp45I	GTSAC	2 cut(s)	27, 223
TspDTI	ATGAA	5 cut(s)	17, 84, 173, 228, 353
TspRI	CASTG	1 cut(s)	345
XapI	RAATTY	1 cut(s)	271
XceI	RCATGY	1 cut(s)	169
XspI	CTAG	3 cut(s)	132, 407, 431
Zsp2I	ATGCAT	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.