Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0017695

Physical Location & Seq

Genomic Coordinates Reverse (-)

51804193 .. 51805771

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0382100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTCGAGCTCCGAGAGCAATGTGTTCGATGTGAGGTTGAATTTGAGAGGGAAAAACGGTGGGGGTTTTAGAGAAGTCATTGAGCTCATGTTTGAGGATGATGACATCACCAAGCGCCTCTTCAGGATTGGAATGTATAGAGTTATTGATGTGCTTGAGCTTTTGGATGGAATCAAGGTTAATGTAAGGAAGTTGGGAATGAAAGGAAAATGTGAAAATTGGATGATACGAATTCCCCTATCCATCCCGAAAAGGAAATCATCATCGAGTTCATTGAGAACAGCGACTATAAGACAAAGCTGCAATTTGGTCACTGTAAAGAATAAAACAATGGTTCTCCAGCTTCACATGGACAAAGCTAAGGATTTGTTGAACCAAATTGTGGAATCTGCAATTATGATAATCAAAGATTGGGAGTGGGTTGTTATTGAAAACCATGGCAGGACTTTAGATTCAGCTGTGGCTAGAAGTTTCACAAAAACTCTAATCTGCAGGATGGTGTTTGGGAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

171

Amino Acids

19.55

Weight (kDa)

9.63

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29170
rosa_chinensis	RchiOBHm_Chr4g0409071
rosa_multiflora	Rmu_sc0004836.1_g000006
rosa_rugosa	Rorug02G0304200 Rorug05G0382100 Rorug05G0582100
rosa_samantha	Rh2DG044500 Rh4BG153400 Rh5CG359300 Rh6AG188900 Rh6AG189900
rosa_wichuraiana	Rw1G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	382
AcsI	RAATTY	2 cut(s)	40, 231
AcuI	CTGAAG	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	3 cut(s)	40, 373, 431
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AluBI	AGCT	7 cut(s)	9, 85, 160, 300, 343, 359, 458
AluI	AGCT	7 cut(s)	9, 85, 160, 300, 343, 359, 458
Alw21I	GWGCWC	2 cut(s)	11, 87
ApeKI	GCWGC	1 cut(s)	300
ApoI	RAATTY	2 cut(s)	40, 231
AspLEI	GCGC	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	100
BanII	GRGCYC	2 cut(s)	11, 87
Bbv12I	GWGCWC	2 cut(s)	11, 87
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	3 cut(s)	161, 251, 490
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BfaI	CTAG	1 cut(s)	465
BfmI	CTRYAG	1 cut(s)	490
BfoI	RGCGCY	1 cut(s)	118
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	323
Bpu10I	CCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	436
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse3DI	GCAATG	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	436
BseGI	GGATG	5 cut(s)	103, 172, 228, 243, 501
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMI	GCAATG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	287
BsiHKAI	GWGCWC	2 cut(s)	11, 87
BslI	CCNNNNNNNGG	1 cut(s)	382
Bsp1286I	GDGCHC	2 cut(s)	11, 87
Bsp19I	CCATGG	1 cut(s)	436
BspMAI	CTGCAG	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	436
BssT1I	CCWWGG	1 cut(s)	436
Bst4CI	ACNGT	2 cut(s)	59, 316
Bst6I	CTCTTC	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	360
BstDSI	CCRYGG	1 cut(s)	436
BstF5I	GGATG	5 cut(s)	103, 172, 228, 243, 501
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstSFI	CTRYAG	1 cut(s)	490
BstV1I	GCAGC	1 cut(s)	287
BtgI	CCRYGG	1 cut(s)	436
BtsCI	GGATG	5 cut(s)	103, 172, 228, 243, 501
BtsIMutI	CAGTG	1 cut(s)	312
CfoI	GCGC	1 cut(s)	117
CviAII	CATG	3 cut(s)	88, 349, 437
CviJI	RGCY	8 cut(s)	9, 85, 160, 300, 343, 359, 458, 464
CviKI_1	RGCY	8 cut(s)	9, 85, 160, 300, 343, 359, 458, 464
DdeI	CTNAG	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Ecl136II	GAGCTC	2 cut(s)	9, 85
Eco130I	CCWWGG	1 cut(s)	436
Eco24I	GRGCYC	2 cut(s)	11, 87
Eco53kI	GAGCTC	2 cut(s)	9, 85
Eco57I	CTGAAG	1 cut(s)	106
EcoICRI	GAGCTC	2 cut(s)	9, 85
EcoRI	GAATTC	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	436
EcoT38I	GRGCYC	2 cut(s)	11, 87
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	3 cut(s)	91, 352, 440
FaiI	YATR	6 cut(s)	89, 138, 290, 350, 398, 438
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FatI	CATG	3 cut(s)	87, 348, 436
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	5 cut(s)	110, 179, 230, 235, 508
FriOI	GRGCYC	2 cut(s)	11, 87
Fsp4HI	GCNGC	1 cut(s)	301
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	1 cut(s)	301
GsuI	CTGGAG	1 cut(s)	323
HaeII	RGCGCY	1 cut(s)	118
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	3 cut(s)	91, 352, 440
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HinfI	GANTC	3 cut(s)	171, 386, 452
HphI	GGTGA	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	2 cut(s)	124, 247
HpyCH4III	ACNGT	2 cut(s)	59, 316
HpyCH4V	TGCA	3 cut(s)	303, 392, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
HpyF3I	CTNAG	1 cut(s)	360
Hsp92II	CATG	3 cut(s)	91, 352, 440
HspAI	GCGC	1 cut(s)	115
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	4 cut(s)	109, 353, 427, 478
Lsp1109I	GCAGC	1 cut(s)	287
MaeI	CTAG	1 cut(s)	465
MaeIII	GTNAC	1 cut(s)	310
MboII	GAAGA	1 cut(s)	112
MhlI	GDGCHC	2 cut(s)	11, 87
MluCI	AATT	6 cut(s)	40, 217, 231, 304, 378, 393
MnlI	CCTC	4 cut(s)	27, 41, 88, 128
MseI	TTAA	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	458
MwoI	GCNNNNNNNGC	1 cut(s)	15
NcoI	CCATGG	1 cut(s)	436
NlaIII	CATG	3 cut(s)	91, 352, 440
NmuCI	GTSAC	1 cut(s)	310
PfeI	GAWTC	3 cut(s)	171, 386, 452
PflMI	CCANNNNNTGG	1 cut(s)	382
PkrI	GCNGC	1 cut(s)	302
Psp124BI	GAGCTC	2 cut(s)	11, 87
PstI	CTGCAG	1 cut(s)	494
PvuII	CAGCTG	1 cut(s)	458
SacI	GAGCTC	2 cut(s)	11, 87
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	1 cut(s)	301
SduI	GDGCHC	2 cut(s)	11, 87
SetI	ASST	9 cut(s)	11, 38, 87, 162, 180, 302, 345, 361, 460
SfcI	CTRYAG	1 cut(s)	490
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	6 cut(s)	40, 217, 231, 304, 378, 393
SspMI	CTAG	1 cut(s)	465
SstI	GAGCTC	2 cut(s)	11, 87
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	2 cut(s)	59, 316
TaqI	TCGA	3 cut(s)	5, 27, 266
TasI	AATT	6 cut(s)	40, 217, 231, 304, 378, 393
TfiI	GAWTC	3 cut(s)	171, 386, 452
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	1 cut(s)	300
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	215, 261
TspRI	CASTG	1 cut(s)	319
Van91I	CCANNNNNTGG	1 cut(s)	382
XapI	RAATTY	2 cut(s)	40, 231
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.