Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0017695

Physical Location & Seq

Genomic Coordinates Forward (+)

42631120 .. 42643899

Gene Structure 12780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG359300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGAGATGGTCAGTCTGAGTGGCAGTTCAGTGACAGCACTAGTCAGTATGGTGGTACCTCTGGGAGAATTCATACTTGGAGAGATCATCCCCAGCGTCAGTCGAGGGATGTGACGTGTTATCAGTGTGGACAGCCAGCTTTTGAGCCCTACAAGGTCAGCAAAGTGGATCTTCTTGCCCAAAGTTGCTCTTTATGGCTCTTAATTTGGGGGTGCTCGGCACTTGGTGTCTGGAAGCTTAACACATTGGGGTTCCTTCCTACACATGCATCCAATTGGGTTTCATCCTTACCCCCTGCTCAGGTTAAGAGCAAGCTTAAAGGTCACTCTAAAAGGATAACTGGCCCAGCATTCTCTCATGTATTAAATGTGCTAGTTTCATCAGGAGCAGATGCTCAGGTTTGTGTGTGGAATTCTGATGGTTGGGAAAAACAGAAGAGCAGATTCTTGCAGCTTCCAGCTGGGAGAACACCATCTTCAGTGTCAGATACTCGCGTTCAGTTTCATCAGGATCAAGCACATTTCTTGGTTGTGCATGAGACTCAGCTGGCCATATTTGAAACAACAAAACTAGAATGTGTAAAGCAGTGGCTCCCATGTGAGTCTGCTGCAGGCGACGATCCTCATTCCGTCGGCGGACCACTAGAGGTCGTCGATCCGACCCGAGAGGACCTTGAACTCGTTCTTGAGGACGAAATCATTGTGGGTCCCCCAGATCCTGACGGTGCCGGAGACGTCGGCGGACGCGATCCACTCGCTGTTGGGGGAGAATCTGGCGACGGTGGCAGGGTAGGCGTGCTCCACGCAGATGGCGACGTTGAGAGGGTTGTCGAGGTTCATGATGATCATGGATCTCGGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

287

Amino Acids

31.22

Weight (kDa)

5.3

Isoelectric Point (pI)

33.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29170
rosa_chinensis	RchiOBHm_Chr4g0409071
rosa_multiflora	Rmu_sc0004836.1_g000006
rosa_rugosa	Rorug02G0304200 Rorug05G0382100 Rorug05G0582100
rosa_samantha	Rh2DG044500 Rh4BG153400 Rh5CG359300 Rh6AG188900 Rh6AG189900
rosa_wichuraiana	Rw1G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	738
Acc65I	GGTACC	1 cut(s)	56
AccB1I	GGYRCC	2 cut(s)	56, 725
AccII	CGCG	2 cut(s)	495, 747
AciI	CCGC	2 cut(s)	636, 741
AclWI	GGATC	7 cut(s)	177, 519, 614, 650, 710, 743, 859
AcoI	YGGCCR	1 cut(s)	549
AcsI	RAATTY	2 cut(s)	69, 412
AcuI	CTGAAG	1 cut(s)	462
AcyI	GRCGYC	1 cut(s)	735
AdeI	CACNNNGTG	1 cut(s)	227
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	301
AflIII	ACRYGT	1 cut(s)	116
AgsI	TTSAA	2 cut(s)	560, 677
AhlI	ACTAGT	1 cut(s)	41
AjiI	CACGTC	1 cut(s)	117
AjuI	GAANNNNNNNTTGG	2 cut(s)	61, 93
AluBI	AGCT	6 cut(s)	140, 238, 316, 454, 461, 547
AluI	AGCT	6 cut(s)	140, 238, 316, 454, 461, 547
Alw21I	GWGCWC	2 cut(s)	218, 801
Alw26I	GTCTC	2 cut(s)	533, 726
AlwI	GGATC	7 cut(s)	177, 519, 614, 650, 710, 743, 859
AlwNI	CAGNNNCTG	1 cut(s)	719
Ama87I	CYCGRG	1 cut(s)	663
AoxI	GGCC	2 cut(s)	343, 549
ApeKI	GCWGC	2 cut(s)	451, 608
ApoI	RAATTY	2 cut(s)	69, 412
Asp700I	GAANNNNTTC	1 cut(s)	681
Asp718I	GGTACC	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	861
AspS9I	GGNCC	4 cut(s)	344, 638, 670, 707
AvaI	CYCGRG	1 cut(s)	663
AvaII	GGWCC	3 cut(s)	638, 670, 707
BaeI	ACNNNNGTAYC	2 cut(s)	480, 513
BalI	TGGCCA	1 cut(s)	551
BanI	GGYRCC	2 cut(s)	56, 725
BanII	GRGCYC	1 cut(s)	150
Bbv12I	GWGCWC	2 cut(s)	218, 801
BbvI	GCAGC	2 cut(s)	463, 595
BccI	CCATC	4 cut(s)	2, 413, 481, 803
BclI	TGATCA	1 cut(s)	844
BcoDI	GTCTC	2 cut(s)	533, 726
BcuI	ACTAGT	1 cut(s)	41
BfaI	CTAG	5 cut(s)	42, 374, 572, 644, 862
BfmI	CTRYAG	1 cut(s)	609
BfoI	RGCGCY	1 cut(s)	862
BisI	GCNGC	2 cut(s)	452, 609
BlsI	GCNGC	2 cut(s)	453, 610
Bme18I	GGWCC	3 cut(s)	638, 670, 707
BmeT110I	CYCGRG	1 cut(s)	663
BmgBI	CACGTC	1 cut(s)	117
BmgT120I	GGNCC	4 cut(s)	344, 638, 670, 707
BmiI	GGNNCC	6 cut(s)	58, 254, 593, 708, 709, 727
BmsI	GCATC	2 cut(s)	278, 382
Bpu10I	CCTNAGC	2 cut(s)	300, 396
BpuEI	CTTGAG	1 cut(s)	707
BsaHI	GRCGYC	1 cut(s)	735
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	1 cut(s)	346
BseGI	GGATG	4 cut(s)	88, 115, 269, 284
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	4 cut(s)	9, 314, 410, 557
BseNI	ACTGG	1 cut(s)	346
BseXI	GCAGC	2 cut(s)	463, 595
BseYI	CCCAGC	3 cut(s)	93, 346, 461
Bsh1236I	CGCG	2 cut(s)	495, 747
BshFI	GGCC	2 cut(s)	345, 551
BshNI	GGYRCC	2 cut(s)	56, 725
BsiHKAI	GWGCWC	2 cut(s)	218, 801
BsiHKCI	CYCGRG	1 cut(s)	663
BsiSI	CCGG	1 cut(s)	729
BslFI	GGGAC	1 cut(s)	693
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	2 cut(s)	533, 726
BsmBI	CGTCTC	1 cut(s)	726
BsmFI	GGGAC	1 cut(s)	693
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	2 cut(s)	345, 551
BsoBI	CYCGRG	1 cut(s)	663
Bsp1286I	GDGCHC	3 cut(s)	150, 218, 801
Bsp143I	GATC	9 cut(s)	85, 169, 511, 619, 655, 715, 748, 844, 851
BspACI	CCGC	2 cut(s)	636, 741
BspANI	GGCC	2 cut(s)	345, 551
BspCNI	CTCAG	4 cut(s)	10, 313, 409, 556
BspFNI	CGCG	2 cut(s)	495, 747
BspHI	TCATGA	1 cut(s)	838
BspLI	GGNNCC	6 cut(s)	58, 254, 593, 708, 709, 727
BspMAI	CTGCAG	1 cut(s)	613
BspPI	GGATC	7 cut(s)	177, 519, 614, 650, 710, 743, 859
BspQI	GCTCTTC	1 cut(s)	431
BspT107I	GGYRCC	2 cut(s)	56, 725
BsrI	ACTGG	1 cut(s)	346
BssMI	GATC	9 cut(s)	85, 169, 511, 619, 655, 715, 748, 844, 851
BssNI	GRCGYC	1 cut(s)	735
Bst4CI	ACNGT	2 cut(s)	725, 782
Bst6I	CTCTTC	1 cut(s)	431
BstACI	GRCGYC	1 cut(s)	735
BstC8I	GCNNGC	5 cut(s)	138, 314, 549, 613, 797
BstDEI	CTNAG	4 cut(s)	18, 300, 396, 543
BstF5I	GGATG	4 cut(s)	88, 115, 269, 284
BstFNI	CGCG	2 cut(s)	495, 747
BstH2I	RGCGCY	1 cut(s)	862
BstHHI	GCGC	1 cut(s)	861
BstKTI	GATC	9 cut(s)	88, 172, 514, 622, 658, 718, 751, 847, 854
BstMAI	GTCTC	2 cut(s)	533, 726
BstMBI	GATC	9 cut(s)	85, 169, 511, 619, 655, 715, 748, 844, 851
BstMWI	GCNNNNNNNGC	2 cut(s)	783, 792
BstNSI	RCATGY	1 cut(s)	269
BstSFI	CTRYAG	1 cut(s)	609
BstUI	CGCG	2 cut(s)	495, 747
BstV1I	GCAGC	2 cut(s)	463, 595
BstX2I	RGATCY	3 cut(s)	169, 715, 851
BstXI	CCANNNNNNTGG	1 cut(s)	809
BstYI	RGATCY	3 cut(s)	169, 715, 851
BsuRI	GGCC	2 cut(s)	345, 551
BtrI	CACGTC	1 cut(s)	117
BtsCI	GGATG	4 cut(s)	88, 115, 269, 284
BtsI	GCAGTG	1 cut(s)	593
BtsIMutI	CAGTG	4 cut(s)	37, 131, 486, 593
Cac8I	GCNNGC	5 cut(s)	138, 314, 549, 613, 797
CaiI	CAGNNNCTG	1 cut(s)	719
CciI	TCATGA	1 cut(s)	838
CfoI	GCGC	1 cut(s)	861
Cfr13I	GGNCC	4 cut(s)	344, 638, 670, 707
CseI	GACGC	2 cut(s)	86, 753
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	6 cut(s)	266, 359, 536, 597, 839, 848
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	4 cut(s)	18, 300, 396, 543
DpnI	GATC	9 cut(s)	87, 171, 513, 621, 657, 717, 750, 846, 853
DpnII	GATC	9 cut(s)	85, 169, 511, 619, 655, 715, 748, 844, 851
DraIII	CACNNNGTG	1 cut(s)	227
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
EciI	GGCGGA	2 cut(s)	651, 756
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	3 cut(s)	638, 670, 707
Eco57I	CTGAAG	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	663
EcoO109I	RGGNCCY	2 cut(s)	670, 707
EcoRI	GAATTC	2 cut(s)	69, 412
EcoT22I	ATGCAT	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	726
FaeI	CATG	6 cut(s)	269, 362, 539, 600, 842, 851
FalI	AAGNNNNNCTT	4 cut(s)	156, 188, 175, 207
FaqI	GGGAC	1 cut(s)	693
FatI	CATG	6 cut(s)	265, 358, 535, 596, 838, 847
FbaI	TGATCA	1 cut(s)	844
Fnu4HI	GCNGC	2 cut(s)	452, 609
FokI	GGATG	4 cut(s)	75, 122, 256, 271
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	452, 609
FspBI	CTAG	5 cut(s)	42, 374, 572, 644, 862
GlaI	GCGC	1 cut(s)	860
GluI	GCNGC	2 cut(s)	452, 609
GsaI	CCCAGC	3 cut(s)	97, 350, 465
HaeII	RGCGCY	1 cut(s)	862
HaeIII	GGCC	2 cut(s)	345, 551
HapII	CCGG	1 cut(s)	729
HgaI	GACGC	2 cut(s)	86, 753
HhaI	GCGC	1 cut(s)	861
Hin1I	GRCGYC	1 cut(s)	735
Hin1II	CATG	6 cut(s)	269, 362, 539, 600, 842, 851
Hin6I	GCGC	1 cut(s)	859
HinP1I	GCGC	1 cut(s)	859
HindIII	AAGCTT	2 cut(s)	236, 314
HinfI	GANTC	4 cut(s)	444, 541, 602, 770
HpaII	CCGG	1 cut(s)	729
Hpy166II	GTNNAC	1 cut(s)	131
Hpy188I	TCNGA	4 cut(s)	19, 418, 487, 660
Hpy188III	TCNNGA	6 cut(s)	232, 384, 509, 686, 719, 839
Hpy8I	GTNNAC	1 cut(s)	131
Hpy99I	CGWCG	6 cut(s)	620, 635, 656, 740, 782, 818
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	2 cut(s)	725, 782
HpyCH4IV	ACGT	3 cut(s)	116, 735, 816
HpyCH4V	TGCA	4 cut(s)	269, 451, 535, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	783, 792
HpyF3I	CTNAG	4 cut(s)	18, 300, 396, 543
HpySE526I	ACGT	3 cut(s)	116, 735, 816
Hsp92I	GRCGYC	1 cut(s)	735
Hsp92II	CATG	6 cut(s)	269, 362, 539, 600, 842, 851
HspAI	GCGC	1 cut(s)	859
KflI	GGGWCCC	1 cut(s)	707
KpnI	GGTACC	1 cut(s)	60
Ksp22I	TGATCA	1 cut(s)	844
Kzo9I	GATC	9 cut(s)	85, 169, 511, 619, 655, 715, 748, 844, 851
LguI	GCTCTTC	1 cut(s)	431
LmnI	GCTCC	3 cut(s)	386, 597, 804
Lsp1109I	GCAGC	2 cut(s)	463, 595
LweI	GCATC	2 cut(s)	278, 382
MaeI	CTAG	5 cut(s)	42, 374, 572, 644, 862
MaeII	ACGT	3 cut(s)	116, 735, 816
MaeIII	GTNAC	3 cut(s)	32, 112, 323
MalI	GATC	9 cut(s)	87, 171, 513, 621, 657, 717, 750, 846, 853
MboI	GATC	9 cut(s)	85, 169, 511, 619, 655, 715, 748, 844, 851
MboII	GAAGA	3 cut(s)	164, 448, 468
MfeI	CAATTG	1 cut(s)	274
MflI	RGATCY	3 cut(s)	169, 715, 851
MhlI	GDGCHC	3 cut(s)	150, 218, 801
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	4 cut(s)	69, 204, 274, 412
MluNI	TGGCCA	1 cut(s)	551
MlyI	GAGTC	2 cut(s)	535, 611
MmeI	TCCRAC	1 cut(s)	683
MnlI	CCTC	8 cut(s)	70, 99, 633, 640, 661, 682, 816, 826
Mox20I	TGGCCA	1 cut(s)	551
Mph1103I	ATGCAT	1 cut(s)	271
MroXI	GAANNNNTTC	1 cut(s)	681
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	5 cut(s)	203, 240, 306, 318, 365
MslI	CAYNNNNRTG	1 cut(s)	807
Msp20I	TGGCCA	1 cut(s)	551
MspA1I	CMGCKG	2 cut(s)	461, 547
MspI	CCGG	1 cut(s)	729
MunI	CAATTG	1 cut(s)	274
Mva1269I	GAATGC	1 cut(s)	350
MvnI	CGCG	2 cut(s)	495, 747
MwoI	GCNNNNNNNGC	2 cut(s)	783, 792
NdeII	GATC	9 cut(s)	85, 169, 511, 619, 655, 715, 748, 844, 851
NlaIII	CATG	6 cut(s)	269, 362, 539, 600, 842, 851
NlaIV	GGNNCC	6 cut(s)	58, 254, 593, 708, 709, 727
NmeAIII	GCCGAG	2 cut(s)	197, 835
NmuCI	GTSAC	3 cut(s)	32, 112, 323
NsiI	ATGCAT	1 cut(s)	271
NspI	RCATGY	1 cut(s)	269
PagI	TCATGA	1 cut(s)	838
PciSI	GCTCTTC	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	2 cut(s)	744, 810
PctI	GAATGC	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	681
PfeI	GAWTC	2 cut(s)	444, 770
PkrI	GCNGC	2 cut(s)	453, 610
PleI	GAGTC	2 cut(s)	535, 610
PpsI	GAGTC	2 cut(s)	535, 610
PpuMI	RGGWCCY	2 cut(s)	670, 707
Psp5II	RGGWCCY	2 cut(s)	670, 707
PspFI	CCCAGC	3 cut(s)	93, 346, 461
PspN4I	GGNNCC	6 cut(s)	58, 254, 593, 708, 709, 727
PspPI	GGNCC	4 cut(s)	344, 638, 670, 707
PspPPI	RGGWCCY	2 cut(s)	670, 707
PstI	CTGCAG	1 cut(s)	613
PstNI	CAGNNNCTG	1 cut(s)	719
PsuI	RGATCY	3 cut(s)	169, 715, 851
PvuII	CAGCTG	2 cut(s)	461, 547
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
RseI	CAYNNNNRTG	1 cut(s)	807
SapI	GCTCTTC	1 cut(s)	431
SaqAI	TTAA	5 cut(s)	203, 240, 306, 318, 365
SatI	GCNGC	2 cut(s)	452, 609
Sau3AI	GATC	9 cut(s)	85, 169, 511, 619, 655, 715, 748, 844, 851
Sau96I	GGNCC	4 cut(s)	344, 638, 670, 707
SchI	GAGTC	2 cut(s)	535, 611
SduI	GDGCHC	3 cut(s)	150, 218, 801
SfaNI	GCATC	2 cut(s)	278, 382
SfcI	CTRYAG	1 cut(s)	609
SinI	GGWCC	3 cut(s)	638, 670, 707
SmiMI	CAYNNNNRTG	1 cut(s)	807
SmlI	CTYRAG	1 cut(s)	686
SmoI	CTYRAG	1 cut(s)	686
SpeI	ACTAGT	1 cut(s)	41
Sse9I	AATT	4 cut(s)	69, 204, 274, 412
SsiI	CCGC	2 cut(s)	636, 741
SspMI	CTAG	5 cut(s)	42, 374, 572, 644, 862
TaaI	ACNGT	2 cut(s)	725, 782
TaiI	ACGT	3 cut(s)	119, 738, 819
TaqI	TCGA	3 cut(s)	104, 654, 831
TasI	AATT	4 cut(s)	69, 204, 274, 412
TfiI	GAWTC	2 cut(s)	444, 770
Tru1I	TTAA	5 cut(s)	203, 240, 306, 318, 365
Tru9I	TTAA	5 cut(s)	203, 240, 306, 318, 365
TscAI	CASTG	4 cut(s)	37, 131, 486, 593
TseFI	GTSAC	3 cut(s)	32, 112, 323
TseI	GCWGC	2 cut(s)	451, 608
Tsp45I	GTSAC	3 cut(s)	32, 112, 323
TspDTI	ATGAA	5 cut(s)	62, 273, 369, 494, 827
TspGWI	ACGGA	1 cut(s)	619
TspRI	CASTG	4 cut(s)	37, 131, 486, 593
VpaK11BI	GGWCC	3 cut(s)	638, 670, 707
XapI	RAATTY	2 cut(s)	69, 412
XceI	RCATGY	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	681
XspI	CTAG	5 cut(s)	42, 374, 572, 644, 862
ZraI	GACGTC	1 cut(s)	736
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.