Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0017695

Physical Location & Seq

Genomic Coordinates Forward (+)

34124589 .. 34126196

Gene Structure 1608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0304200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAAGCTCATGAAAATCAACAGCCTCAGCCTCAGCCCCAAACGCCTCTTCCGCTCCAAGAAGGACCGCTCCGCCGTTTCCCGCTCCGACCCACCGTCCTTTGGCTCCGGAACGGCGTCGTCTTCCTCCTCGGATCCCCTGCCGTCCGACCACAAGCCCGGGCCCGGCGGCATGGGGACTCCCACGAGCGTTCTGCCGGAAATATCCGGGGACTGGTCGGATTTCTCTGCCGACACTCATCTCGACGTGGCCCAGGCGTTTAAGCTGATCGACAGAGACAACGACGGAGTGGTGTCGAGAAAAGAGCTGGAGGCTCTGCTGAAGCGGCTGGGGGCGGAGCCGCCGAGCCAGGAAGAGGTGGCGATGATGTTGAGCGAGGTGGACCGGGACGGCGACGGCTGCATACCCCTGGAGGCCTTGTTGCACCGGTTCGGACCGGCTTGCGAACCGGCGGCCGACTCGGAGCTGCGGGAGGCTTTTGAGGTGTTCGACGCGGATCACGACGGAAAAATATCGGCGGAGGAGCTGTTCAGCGTGTTCACGGCCATAGGGGACGACCGGTGCACGTTAGAGGACTGCCGGCGCATGATAGCCGAGGTCGATAAGAACGGGGATGGGTTCGTCTGCTTTCAGGACTTTGCTCTTATGATGGAGCTGCAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

221

Amino Acids

24.09

Weight (kDa)

4.61

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	83 - 110	4.1e-06	EF hand domain
EF-hand_7	PF13499	84 - 138	2.4e-11	EF-hand domain pair
EF-hand_6	PF13405	84 - 111	9.6e-07	EF-hand domain
EF-hand_7	PF13499	154 - 217	1.2e-12	EF-hand domain pair
EF-hand_1	PF00036	155 - 182	6.7e-08	EF hand domain
EF-hand_6	PF13405	155 - 184	9.6e-08	EF-hand domain
EF-hand_5	PF13202	156 - 176	9.1e-07	EF hand
EF-hand_1	PF00036	192 - 218	3.1e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0017695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29170
rosa_chinensis	RchiOBHm_Chr4g0409071
rosa_multiflora	Rmu_sc0004836.1_g000006
rosa_rugosa	Rorug02G0304200 Rorug05G0382100 Rorug05G0582100
rosa_samantha	Rh2DG044500 Rh4BG153400 Rh5CG359300 Rh6AG188900 Rh6AG189900
rosa_wichuraiana	Rw1G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	54, 69, 84
AccII	CGCG	1 cut(s)	494
AccIII	TCCGGA	1 cut(s)	107
AclWI	GGATC	3 cut(s)	128, 141, 504
AcoI	YGGCCR	2 cut(s)	453, 543
AcuI	CTGAAG	1 cut(s)	341
AcyI	GRCGYC	1 cut(s)	116
AfiI	CCNNNNNNNGG	4 cut(s)	101, 164, 213, 355
AgeI	ACCGGT	2 cut(s)	426, 558
AhdI	GACNNNNNGTC	1 cut(s)	94
AjiI	CACGTC	1 cut(s)	247
AjnI	CCWGG	3 cut(s)	252, 348, 408
AjuI	GAANNNNNNNTTGG	2 cut(s)	32, 64
AloI	GAACNNNNNNTCC	2 cut(s)	512, 544
AluBI	AGCT	6 cut(s)	7, 265, 307, 466, 526, 655
AluI	AGCT	6 cut(s)	7, 265, 307, 466, 526, 655
Alw21I	GWGCWC	1 cut(s)	566
Alw26I	GTCTC	1 cut(s)	270
Alw44I	GTGCAC	1 cut(s)	562
AlwI	GGATC	3 cut(s)	128, 141, 504
Ama87I	CYCGRG	1 cut(s)	158
Aor13HI	TCCGGA	1 cut(s)	107
AoxI	GGCC	5 cut(s)	161, 249, 414, 453, 543
ApaI	GGGCCC	1 cut(s)	165
ApaLI	GTGCAC	1 cut(s)	562
ApeKI	GCWGC	3 cut(s)	399, 466, 655
AsiGI	ACCGGT	2 cut(s)	426, 558
AspLEI	GCGC	1 cut(s)	585
AspS9I	GGNCC	6 cut(s)	64, 161, 162, 250, 382, 434
AsuC2I	CCSGG	5 cut(s)	159, 160, 165, 208, 386
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	3 cut(s)	64, 382, 434
BaeGI	GKGCMC	2 cut(s)	165, 566
BamHI	GGATCC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	165
BauI	CACGAG	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	566
BbvCI	CCTCAGC	2 cut(s)	26, 32
BbvI	GCAGC	3 cut(s)	386, 453, 642
BccI	CCATC	2 cut(s)	608, 643
BceAI	ACGGC	6 cut(s)	59, 127, 129, 406, 412, 558
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	3 cut(s)	254, 350, 410
BcnI	CCSGG	5 cut(s)	159, 160, 165, 208, 386
BcoDI	GTCTC	1 cut(s)	270
BfmI	CTRYAG	1 cut(s)	656
BisI	GCNGC	7 cut(s)	169, 326, 341, 400, 453, 467, 656
BlsI	GCNGC	7 cut(s)	170, 327, 342, 401, 454, 468, 657
Bme1390I	CCNGG	8 cut(s)	159, 160, 165, 208, 254, 350, 386, 410
Bme18I	GGWCC	3 cut(s)	64, 382, 434
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	158
BmgBI	CACGTC	1 cut(s)	247
BmgT120I	GGNCC	6 cut(s)	64, 161, 162, 250, 382, 434
BmiI	GGNNCC	4 cut(s)	106, 135, 163, 339
BmrFI	CCNGG	8 cut(s)	159, 160, 165, 208, 254, 350, 386, 410
BpiI	GAAGAC	1 cut(s)	114
BpmI	CTGGAG	2 cut(s)	329, 431
Bpu10I	CCTNAGC	2 cut(s)	26, 32
BpuMI	CCSGG	5 cut(s)	159, 160, 165, 208, 386
BsaHI	GRCGYC	1 cut(s)	116
BsaJI	CCNNGG	6 cut(s)	129, 158, 207, 252, 408, 594
BsaWI	WCCGGW	3 cut(s)	107, 426, 558
BsaXI	ACNNNNNCTCC	4 cut(s)	404, 434, 512, 542
Bsc4I	CCNNNNNNNGG	4 cut(s)	101, 164, 213, 355
Bse118I	RCCGGY	5 cut(s)	426, 436, 448, 558, 579
Bse1I	ACTGG	1 cut(s)	218
BseAI	TCCGGA	1 cut(s)	107
BseBI	CCWGG	3 cut(s)	254, 350, 410
BseDI	CCNNGG	6 cut(s)	129, 158, 207, 252, 408, 594
BseGI	GGATG	1 cut(s)	619
BseLI	CCNNNNNNNGG	4 cut(s)	101, 164, 213, 355
BseMII	CTCAG	2 cut(s)	40, 46
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	2 cut(s)	118, 536
BseSI	GKGCMC	2 cut(s)	165, 566
BseX3I	CGGCCG	1 cut(s)	453
BseXI	GCAGC	3 cut(s)	386, 453, 642
BseYI	CCCAGC	1 cut(s)	328
Bsh1236I	CGCG	1 cut(s)	494
Bsh1285I	CGRYCG	2 cut(s)	456, 559
BshFI	GGCC	5 cut(s)	163, 251, 416, 455, 545
BshTI	ACCGGT	2 cut(s)	426, 558
BsiEI	CGRYCG	2 cut(s)	456, 559
BsiHKAI	GWGCWC	1 cut(s)	566
BsiHKCI	CYCGRG	1 cut(s)	158
BslFI	GGGAC	4 cut(s)	190, 224, 401, 566
BslI	CCNNNNNNNGG	4 cut(s)	101, 164, 213, 355
BsmAI	GTCTC	1 cut(s)	270
BsmFI	GGGAC	4 cut(s)	190, 224, 401, 566
BsnI	GGCC	5 cut(s)	163, 251, 416, 455, 545
BsoBI	CYCGRG	1 cut(s)	158
Bsp120I	GGGCCC	1 cut(s)	161
Bsp1286I	GDGCHC	2 cut(s)	165, 566
Bsp13I	TCCGGA	1 cut(s)	107
Bsp143I	GATC	3 cut(s)	133, 267, 496
BspANI	GGCC	5 cut(s)	163, 251, 416, 455, 545
BspCNI	CTCAG	2 cut(s)	39, 45
BspEI	TCCGGA	1 cut(s)	107
BspFNI	CGCG	1 cut(s)	494
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	4 cut(s)	106, 135, 163, 339
BspMAI	CTGCAG	1 cut(s)	660
BspPI	GGATC	3 cut(s)	128, 141, 504
BsrBI	CCGCTC	3 cut(s)	54, 69, 84
BsrFI	RCCGGY	5 cut(s)	426, 436, 448, 558, 579
BsrI	ACTGG	1 cut(s)	218
BssAI	RCCGGY	5 cut(s)	426, 436, 448, 558, 579
BssECI	CCNNGG	6 cut(s)	129, 158, 207, 252, 408, 594
BssMI	GATC	3 cut(s)	133, 267, 496
BssNI	GRCGYC	1 cut(s)	116
BssSI	CACGAG	1 cut(s)	184
Bst2BI	CACGAG	1 cut(s)	184
Bst2UI	CCWGG	3 cut(s)	254, 350, 410
Bst4CI	ACNGT	1 cut(s)	96
Bst6I	CTCTTC	2 cut(s)	53, 348
BstACI	GRCGYC	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	442, 581
BstDEI	CTNAG	2 cut(s)	26, 32
BstF5I	GGATG	1 cut(s)	619
BstFNI	CGCG	1 cut(s)	494
BstHHI	GCGC	1 cut(s)	585
BstKTI	GATC	3 cut(s)	136, 270, 499
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	3 cut(s)	133, 267, 496
BstMCI	CGRYCG	2 cut(s)	456, 559
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 51, 325, 399
BstNI	CCWGG	3 cut(s)	254, 350, 410
BstSCI	CCNGG	8 cut(s)	157, 158, 163, 206, 252, 348, 384, 408
BstSFI	CTRYAG	1 cut(s)	656
BstSLI	GKGCMC	2 cut(s)	165, 566
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	3 cut(s)	386, 453, 642
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BstZI	CGGCCG	1 cut(s)	453
BsuRI	GGCC	5 cut(s)	163, 251, 416, 455, 545
BtgZI	GCGATG	1 cut(s)	377
BtrI	CACGTC	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	619
Cac8I	GCNNGC	2 cut(s)	442, 581
CciI	TCATGA	1 cut(s)	9
CfoI	GCGC	1 cut(s)	585
Cfr10I	RCCGGY	5 cut(s)	426, 436, 448, 558, 579
Cfr13I	GGNCC	6 cut(s)	64, 161, 162, 250, 382, 434
Cfr9I	CCCGGG	1 cut(s)	158
CpoI	CGGWCCG	1 cut(s)	434
CseI	GACGC	2 cut(s)	105, 500
CspAI	ACCGGT	2 cut(s)	426, 558
CspI	CGGWCCG	1 cut(s)	434
CviAII	CATG	3 cut(s)	10, 172, 586
DdeI	CTNAG	2 cut(s)	26, 32
DpnI	GATC	3 cut(s)	135, 269, 498
DpnII	GATC	3 cut(s)	133, 267, 496
DriI	GACNNNNNGTC	1 cut(s)	94
EaeI	YGGCCR	2 cut(s)	453, 543
EagI	CGGCCG	1 cut(s)	453
Eam1104I	CTCTTC	2 cut(s)	53, 348
Eam1105I	GACNNNNNGTC	1 cut(s)	94
EarI	CTCTTC	2 cut(s)	53, 348
EciI	GGCGGA	3 cut(s)	61, 350, 533
EclXI	CGGCCG	1 cut(s)	453
Eco147I	AGGCCT	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	165
Eco47I	GGWCC	3 cut(s)	64, 382, 434
Eco52I	CGGCCG	1 cut(s)	453
Eco57I	CTGAAG	1 cut(s)	341
Eco88I	CYCGRG	1 cut(s)	158
EcoRII	CCWGG	3 cut(s)	252, 348, 408
EcoT38I	GRGCYC	1 cut(s)	165
FaeI	CATG	3 cut(s)	13, 175, 589
FaiI	YATR	6 cut(s)	11, 173, 404, 548, 587, 647
FaqI	GGGAC	4 cut(s)	190, 224, 401, 566
FatI	CATG	3 cut(s)	9, 171, 585
FauI	CCCGC	2 cut(s)	89, 462
Fnu4HI	GCNGC	7 cut(s)	169, 326, 341, 400, 453, 467, 656
FokI	GGATG	1 cut(s)	626
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	7 cut(s)	169, 326, 341, 400, 453, 467, 656
GlaI	GCGC	1 cut(s)	584
GluI	GCNGC	7 cut(s)	169, 326, 341, 400, 453, 467, 656
GsaI	CCCAGC	1 cut(s)	332
GsuI	CTGGAG	2 cut(s)	329, 431
HaeIII	GGCC	5 cut(s)	163, 251, 416, 455, 545
HgaI	GACGC	2 cut(s)	105, 500
HhaI	GCGC	1 cut(s)	585
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	3 cut(s)	13, 175, 589
Hin6I	GCGC	1 cut(s)	583
HinP1I	GCGC	1 cut(s)	583
HinfI	GANTC	2 cut(s)	178, 458
Hpy166II	GTNNAC	3 cut(s)	382, 540, 564
Hpy188I	TCNGA	6 cut(s)	88, 133, 148, 220, 434, 463
Hpy188III	TCNNGA	6 cut(s)	10, 108, 242, 297, 500, 632
Hpy8I	GTNNAC	3 cut(s)	382, 540, 564
Hpy99I	CGWCG	6 cut(s)	121, 248, 287, 398, 494, 506
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4IV	ACGT	2 cut(s)	246, 566
HpyCH4V	TGCA	4 cut(s)	402, 424, 564, 658
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 51, 325, 399
HpyF3I	CTNAG	2 cut(s)	26, 32
HpySE526I	ACGT	2 cut(s)	246, 566
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	3 cut(s)	13, 175, 589
HspAI	GCGC	1 cut(s)	583
Kpn2I	TCCGGA	1 cut(s)	107
KroI	GCCGGC	1 cut(s)	579
KroNI	GCCGGC	1 cut(s)	581
Kzo9I	GATC	3 cut(s)	133, 267, 496
LmnI	GCTCC	8 cut(s)	59, 74, 89, 110, 337, 463, 523, 652
Lsp1109I	GCAGC	3 cut(s)	386, 453, 642
MaeII	ACGT	2 cut(s)	246, 566
MalI	GATC	3 cut(s)	135, 269, 498
MbiI	CCGCTC	3 cut(s)	54, 69, 84
MboI	GATC	3 cut(s)	133, 267, 496
MboII	GAAGA	3 cut(s)	40, 114, 365
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	2 cut(s)	165, 566
MlyI	GAGTC	2 cut(s)	172, 452
MmeI	TCCRAC	3 cut(s)	111, 171, 198
MroI	TCCGGA	1 cut(s)	107
MroNI	GCCGGC	1 cut(s)	579
MseI	TTAA	1 cut(s)	261
MspR9I	CCNGG	8 cut(s)	159, 160, 165, 208, 254, 350, 386, 410
MvaI	CCWGG	3 cut(s)	254, 350, 410
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	4 cut(s)	42, 51, 325, 399
NaeI	GCCGGC	1 cut(s)	581
NciI	CCSGG	5 cut(s)	159, 160, 165, 208, 386
NdeII	GATC	3 cut(s)	133, 267, 496
NgoMIV	GCCGGC	1 cut(s)	579
NlaIII	CATG	3 cut(s)	13, 175, 589
NlaIV	GGNNCC	4 cut(s)	106, 135, 163, 339
NmeAIII	GCCGAG	2 cut(s)	369, 619
PagI	TCATGA	1 cut(s)	9
PceI	AGGCCT	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PdiI	GCCGGC	1 cut(s)	581
PinAI	ACCGGT	2 cut(s)	426, 558
PkrI	GCNGC	7 cut(s)	170, 327, 342, 401, 454, 468, 657
PleI	GAGTC	2 cut(s)	172, 452
PpsI	GAGTC	2 cut(s)	172, 452
Psp6I	CCWGG	3 cut(s)	252, 348, 408
PspFI	CCCAGC	1 cut(s)	328
PspGI	CCWGG	3 cut(s)	252, 348, 408
PspN4I	GGNNCC	4 cut(s)	106, 135, 163, 339
PspOMI	GGGCCC	1 cut(s)	161
PspPI	GGNCC	6 cut(s)	64, 161, 162, 250, 382, 434
PstI	CTGCAG	1 cut(s)	660
PsuI	RGATCY	1 cut(s)	133
Rsr2I	CGGWCCG	1 cut(s)	434
RsrII	CGGWCCG	1 cut(s)	434
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	7 cut(s)	169, 326, 341, 400, 453, 467, 656
Sau3AI	GATC	3 cut(s)	133, 267, 496
Sau96I	GGNCC	6 cut(s)	64, 161, 162, 250, 382, 434
SchI	GAGTC	2 cut(s)	172, 452
ScrFI	CCNGG	8 cut(s)	159, 160, 165, 208, 254, 350, 386, 410
SduI	GDGCHC	2 cut(s)	165, 566
SfcI	CTRYAG	1 cut(s)	656
SinI	GGWCC	3 cut(s)	64, 382, 434
SmaI	CCCGGG	1 cut(s)	160
SrfI	GCCCGGGC	1 cut(s)	160
SseBI	AGGCCT	1 cut(s)	416
StuI	AGGCCT	1 cut(s)	416
StyD4I	CCNGG	8 cut(s)	157, 158, 163, 206, 252, 348, 384, 408
TaaI	ACNGT	1 cut(s)	96
TaiI	ACGT	2 cut(s)	249, 569
TaqI	TCGA	5 cut(s)	243, 270, 296, 489, 600
TauI	GCSGC	4 cut(s)	171, 328, 343, 455
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TseI	GCWGC	3 cut(s)	399, 466, 655
TspDTI	ATGAA	2 cut(s)	17, 26
TspGWI	ACGGA	2 cut(s)	300, 519
TspMI	CCCGGG	1 cut(s)	158
VneI	GTGCAC	1 cut(s)	562
VpaK11BI	GGWCC	3 cut(s)	64, 382, 434
XmaI	CCCGGG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.