Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0017695

Physical Location & Seq

Genomic Coordinates Reverse (-)

3078753 .. 3090274

Gene Structure 11522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG044500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGATCCAGCATGCAGTGACTCCTGCTGGTACAAGCAATTTCAAGTTCTTGAATAAGGTGATTCCTGATGGTCCAATTCTATTCGGTGAATTGTTTTATGTTTCGGATAACCAATCAATTCACAATGTAGATGCCTGCCAAGCCACAGATGCACGTACTGTATTAGATGGTTGTTATTTAGTCGTAATTTTCTTGATGCAGGTTAAGAGCAAGCTTAAAGGTCACTCTAAAAGGTTAACTGGCCTAGCATTCTCTCATGTATTAAATGTGCTAGTTTCATCAGGAGCAGATGCTCAAGTTTGTGTGTGGAATTCTGATGGATGGGAAAAACAAAAGAGCAGATTCTTGCAGCTTCCAGCTGGGAGAACACCATCTTCAGTGTCAGATACTCGCGTTCAGTTTCATCAGGAGCAGGCACATTTCTTGGTTGTGCATGAGACTCAGCTAGCCATATTTGAAACAACAAAACTAGAATGTGTAAAGCAGAGAAATAACCAAACCCTAATACCTGGCACTATTATAAGTAATAAGGCCGAAGAACTTACCACAAACGACGTGTTGGCAAGATTAAGCAGTTTCTTCAAACTCAAGAAGAAGAAATTACAAGTGCTAGCTACATGGAATGACTTGGTGTTGGAGAATGTGGGAGGGACTCCCACATCTAAGAAATGGTTTAAGGACTATGTCTTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

231

Amino Acids

25.88

Weight (kDa)

9.25

Isoelectric Point (pI)

22.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	67 - 164	5.4e-06	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	70 - 165	8.7e-06	WDHD1 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29170
rosa_chinensis	RchiOBHm_Chr4g0409071
rosa_multiflora	Rmu_sc0004836.1_g000006
rosa_rugosa	Rorug02G0304200 Rorug05G0382100 Rorug05G0582100
rosa_samantha	Rh2DG044500 Rh4BG153400 Rh5CG359300 Rh6AG188900 Rh6AG189900
rosa_wichuraiana	Rw1G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	521
Acc36I	ACCTGC	1 cut(s)	190
AccII	CGCG	1 cut(s)	393
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	2 cut(s)	31, 157
AflIII	ACRYGT	1 cut(s)	555
AgsI	TTSAA	4 cut(s)	43, 52, 458, 583
AjiI	CACGTC	1 cut(s)	556
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	5 cut(s)	214, 352, 359, 445, 614
AluI	AGCT	5 cut(s)	214, 352, 359, 445, 614
Alw26I	GTCTC	1 cut(s)	431
AoxI	GGCC	2 cut(s)	241, 531
ApeKI	GCWGC	1 cut(s)	349
ApoI	RAATTY	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	71
AsuHPI	GGTGA	2 cut(s)	70, 98
AsuNHI	GCTAGC	2 cut(s)	445, 610
AvaII	GGWCC	1 cut(s)	71
BaeI	ACNNNNGTAYC	2 cut(s)	378, 411
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	5 cut(s)	62, 161, 311, 315, 379
BciT130I	CCWGG	1 cut(s)	510
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	5 cut(s)	245, 272, 446, 470, 611
BfuAI	ACCTGC	1 cut(s)	190
BisI	GCNGC	1 cut(s)	350
BlsI	GCNGC	1 cut(s)	351
Bme1390I	CCNGG	1 cut(s)	510
Bme18I	GGWCC	1 cut(s)	71
BmgBI	CACGTC	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	510
BmsI	GCATC	4 cut(s)	121, 139, 186, 280
BmtI	GCTAGC	2 cut(s)	449, 614
BpuEI	CTTGAG	2 cut(s)	279, 572
BsaAI	YACGTR	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	510
BseGI	GGATG	1 cut(s)	326
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	1 cut(s)	244
BseXI	GCAGC	1 cut(s)	361
BseYI	CCCAGC	1 cut(s)	359
Bsh1236I	CGCG	1 cut(s)	393
BshFI	GGCC	2 cut(s)	243, 533
BslFI	GGGAC	1 cut(s)	664
BsmAI	GTCTC	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	664
BsmI	GAATGC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	243, 533
Bsp143I	GATC	1 cut(s)	3
BspANI	GGCC	2 cut(s)	243, 533
BspCNI	CTCAG	1 cut(s)	454
BspFNI	CGCG	1 cut(s)	393
BspMI	ACCTGC	1 cut(s)	190
BspOI	GCTAGC	2 cut(s)	449, 614
BsrI	ACTGG	1 cut(s)	244
BssMI	GATC	1 cut(s)	3
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	1 cut(s)	160
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	6 cut(s)	12, 136, 212, 414, 447, 612
BstDEI	CTNAG	2 cut(s)	441, 663
BstF5I	GGATG	1 cut(s)	326
BstFNI	CGCG	1 cut(s)	393
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 149
BstNI	CCWGG	1 cut(s)	510
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	508
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	361
BsuRI	GGCC	2 cut(s)	243, 533
BtrI	CACGTC	1 cut(s)	556
BtsCI	GGATG	1 cut(s)	326
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	2 cut(s)	21, 384
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	6 cut(s)	12, 136, 212, 414, 447, 612
Cfr13I	GGNCC	1 cut(s)	71
Csp6I	GTAC	2 cut(s)	30, 156
CviAII	CATG	4 cut(s)	11, 257, 434, 618
CviJI	RGCY	9 cut(s)	143, 214, 243, 352, 359, 445, 449, 533, 614
CviKI_1	RGCY	9 cut(s)	143, 214, 243, 352, 359, 445, 449, 533, 614
CviQI	GTAC	2 cut(s)	30, 156
DdeI	CTNAG	2 cut(s)	441, 663
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DraI	TTTAAA	1 cut(s)	691
Eco47I	GGWCC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	360
EcoRI	GAATTC	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	508
FaeI	CATG	4 cut(s)	14, 260, 437, 621
FaiI	YATR	8 cut(s)	12, 99, 258, 435, 452, 521, 619, 684
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	4 cut(s)	10, 256, 433, 617
Fnu4HI	GCNGC	1 cut(s)	350
FokI	GGATG	1 cut(s)	333
Fsp4HI	GCNGC	1 cut(s)	350
FspBI	CTAG	5 cut(s)	245, 272, 446, 470, 611
GluI	GCNGC	1 cut(s)	350
GsaI	CCCAGC	1 cut(s)	363
HaeIII	GGCC	2 cut(s)	243, 533
Hin1II	CATG	4 cut(s)	14, 260, 437, 621
HincII	GTYRAC	1 cut(s)	237
HindII	GTYRAC	1 cut(s)	237
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	5 cut(s)	19, 61, 342, 439, 652
HpaI	GTTAAC	1 cut(s)	237
HphI	GGTGA	2 cut(s)	70, 98
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188I	TCNGA	3 cut(s)	106, 316, 385
Hpy188III	TCNNGA	6 cut(s)	49, 65, 193, 282, 407, 589
Hpy8I	GTNNAC	1 cut(s)	237
Hpy99I	CGWCG	1 cut(s)	557
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	2 cut(s)	154, 555
HpyCH4V	TGCA	5 cut(s)	14, 152, 199, 349, 433
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 149
HpyF3I	CTNAG	2 cut(s)	441, 663
HpySE526I	ACGT	2 cut(s)	154, 555
Hsp92II	CATG	4 cut(s)	14, 260, 437, 621
KspAI	GTTAAC	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	2 cut(s)	284, 409
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	4 cut(s)	121, 139, 186, 280
MaeI	CTAG	5 cut(s)	245, 272, 446, 470, 611
MaeII	ACGT	2 cut(s)	154, 555
MaeIII	GTNAC	2 cut(s)	16, 221
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	5 cut(s)	366, 548, 571, 604, 607
MluCI	AATT	7 cut(s)	37, 75, 89, 117, 186, 310, 599
MlyI	GAGTC	3 cut(s)	13, 433, 646
MmeI	TCCRAC	1 cut(s)	615
MnlI	CCTC	1 cut(s)	641
MseI	TTAA	7 cut(s)	204, 216, 236, 263, 569, 675, 690
MspA1I	CMGCKG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	510
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	2 cut(s)	140, 149
NdeII	GATC	1 cut(s)	3
NheI	GCTAGC	2 cut(s)	445, 610
NlaIII	CATG	4 cut(s)	14, 260, 437, 621
NmuCI	GTSAC	2 cut(s)	16, 221
NspI	RCATGY	1 cut(s)	14
PaeI	GCATGC	1 cut(s)	14
PctI	GAATGC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	61, 342
PflFI	GACNNNGTC	1 cut(s)	683
PkrI	GCNGC	1 cut(s)	351
PleI	GAGTC	3 cut(s)	13, 433, 646
PpsI	GAGTC	3 cut(s)	13, 433, 646
Ppu21I	YACGTR	1 cut(s)	155
PsiI	TTATAA	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	508
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	508
PspPI	GGNCC	1 cut(s)	71
PsyI	GACNNNGTC	1 cut(s)	683
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	2 cut(s)	31, 157
RsaNI	GTAC	2 cut(s)	30, 156
SaqAI	TTAA	7 cut(s)	204, 216, 236, 263, 569, 675, 690
SatI	GCNGC	1 cut(s)	350
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	71
SchI	GAGTC	3 cut(s)	13, 433, 646
ScrFI	CCNGG	1 cut(s)	510
SfaNI	GCATC	4 cut(s)	121, 139, 186, 280
SinI	GGWCC	1 cut(s)	71
SmlI	CTYRAG	2 cut(s)	294, 587
SmoI	CTYRAG	2 cut(s)	294, 587
SphI	GCATGC	1 cut(s)	14
Sse9I	AATT	7 cut(s)	37, 75, 89, 117, 186, 310, 599
SspMI	CTAG	5 cut(s)	245, 272, 446, 470, 611
StyD4I	CCNGG	1 cut(s)	508
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	2 cut(s)	157, 558
TasI	AATT	7 cut(s)	37, 75, 89, 117, 186, 310, 599
TfiI	GAWTC	2 cut(s)	61, 342
Tru1I	TTAA	7 cut(s)	204, 216, 236, 263, 569, 675, 690
Tru9I	TTAA	7 cut(s)	204, 216, 236, 263, 569, 675, 690
TscAI	CASTG	2 cut(s)	21, 384
TseFI	GTSAC	2 cut(s)	16, 221
TseI	GCWGC	1 cut(s)	349
Tsp45I	GTSAC	2 cut(s)	16, 221
TspDTI	ATGAA	2 cut(s)	267, 392
TspRI	CASTG	2 cut(s)	21, 384
Tth111I	GACNNNGTC	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	71
XapI	RAATTY	1 cut(s)	310
XceI	RCATGY	1 cut(s)	14
XspI	CTAG	5 cut(s)	245, 272, 446, 470, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.