Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0017695

Physical Location & Seq

Genomic Coordinates Forward (+)

33475319 .. 33489475

Gene Structure 14157 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG188900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCAGGGAGAAGAAAACGGATCACTGGCGTTTTTGAGCCCTACAAGCTTAACACATTGGGGTTCCTGCCTACACATGCATCCGATTGGGTTTCATCCTTACCCCCTGCTCAGGTTAAGAGCAAGCTTAAAGGTCACTCTAAAAGGTTAACTGGCCTAGCATTCTCTCATGTATTAAATGTGCTAGTTTCATCAAGAGCAGATGCTCAGGTTTGTGTGTGGAATTCTGATGGATGGGAAAAACAAAAGAGCAGATTCTTGCAGCTTCCAGCTGGGAGAACACCATCTTCAGTGTCAGATACTCGCGTTCAGTTTCATCAGGAGCAGGCACATTTCTTGGTTGTGCATGAGACTCAGCTAGCCATATTTGAAACAACAAAACTAGAATGTGTAAAGCAGGTACGTGTATTTGTTTTTAGGTGCATATATTTGAAGATTTATCAGCTCGTTTCCATTTTTTATCCATTAACTAAATCCTATTCTCTGTTTTTTAGTGGCTCCCATGTGAGTCTGCTGCCCCCATCTCCCAAGCAACATTCTCATGCGATAGCCAGCTTATTTATGCCAGCTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

191

Amino Acids

21.62

Weight (kDa)

10.02

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	37 - 134	7.6e-06	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29170
rosa_chinensis	RchiOBHm_Chr4g0409071
rosa_multiflora	Rmu_sc0004836.1_g000006
rosa_rugosa	Rorug02G0304200 Rorug05G0382100 Rorug05G0582100
rosa_samantha	Rh2DG044500 Rh4BG153400 Rh5CG359300 Rh6AG188900 Rh6AG189900
rosa_wichuraiana	Rw1G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	388
AccII	CGCG	1 cut(s)	306
AclWI	GGATC	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	1 cut(s)	402
AfiI	CCNNNNNNNGG	1 cut(s)	112
AflIII	ACRYGT	1 cut(s)	403
AgsI	TTSAA	2 cut(s)	371, 433
AluBI	AGCT	8 cut(s)	49, 127, 265, 272, 358, 445, 555, 569
AluI	AGCT	8 cut(s)	49, 127, 265, 272, 358, 445, 555, 569
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	1 cut(s)	29
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	262, 514
ApoI	RAATTY	1 cut(s)	223
AsuNHI	GCTAGC	1 cut(s)	358
BaeI	ACNNNNGTAYC	2 cut(s)	291, 324
BanII	GRGCYC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	274, 501
BccI	CCATC	4 cut(s)	224, 228, 292, 529
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	4 cut(s)	158, 185, 359, 383
BfuAI	ACCTGC	1 cut(s)	388
BisI	GCNGC	2 cut(s)	263, 515
BlsI	GCNGC	2 cut(s)	264, 516
BmiI	GGNNCC	2 cut(s)	65, 499
BmsI	GCATC	2 cut(s)	89, 193
BmtI	GCTAGC	1 cut(s)	362
Bpu10I	CCTNAGC	2 cut(s)	111, 207
BsaAI	YACGTR	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse1I	ACTGG	2 cut(s)	31, 157
BseGI	GGATG	3 cut(s)	80, 95, 239
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMII	CTCAG	3 cut(s)	125, 221, 368
BseNI	ACTGG	2 cut(s)	31, 157
BseXI	GCAGC	2 cut(s)	274, 501
BseYI	CCCAGC	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	306
BshFI	GGCC	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	1 cut(s)	344
BsmI	GAATGC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	3 cut(s)	124, 220, 367
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	2 cut(s)	65, 499
BspMI	ACCTGC	1 cut(s)	388
BspOI	GCTAGC	1 cut(s)	362
BspPI	GGATC	1 cut(s)	29
BsrI	ACTGG	2 cut(s)	31, 157
BssMI	GATC	1 cut(s)	21
BstBAI	YACGTR	1 cut(s)	404
BstC8I	GCNNGC	5 cut(s)	125, 327, 360, 553, 567
BstDEI	CTNAG	3 cut(s)	111, 207, 354
BstF5I	GGATG	3 cut(s)	80, 95, 239
BstFNI	CGCG	1 cut(s)	306
BstKTI	GATC	1 cut(s)	24
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNSI	RCATGY	1 cut(s)	80
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	274, 501
BsuRI	GGCC	1 cut(s)	156
BtsCI	GGATG	3 cut(s)	80, 95, 239
BtsIMutI	CAGTG	2 cut(s)	24, 297
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	5 cut(s)	125, 327, 360, 553, 567
Csp6I	GTAC	1 cut(s)	401
CviAII	CATG	5 cut(s)	77, 170, 347, 503, 542
CviQI	GTAC	1 cut(s)	401
DdeI	CTNAG	3 cut(s)	111, 207, 354
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	42
Eco57I	CTGAAG	1 cut(s)	273
EcoRI	GAATTC	1 cut(s)	223
EcoT22I	ATGCAT	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	42
FaeI	CATG	5 cut(s)	80, 173, 350, 506, 545
FaiI	YATR	9 cut(s)	78, 171, 348, 365, 425, 427, 504, 543, 563
FatI	CATG	5 cut(s)	76, 169, 346, 502, 541
Fnu4HI	GCNGC	2 cut(s)	263, 515
FokI	GGATG	3 cut(s)	67, 82, 246
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	2 cut(s)	263, 515
FspBI	CTAG	4 cut(s)	158, 185, 359, 383
GluI	GCNGC	2 cut(s)	263, 515
GsaI	CCCAGC	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	156
Hin1II	CATG	5 cut(s)	80, 173, 350, 506, 545
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HindIII	AAGCTT	2 cut(s)	47, 125
HinfI	GANTC	3 cut(s)	255, 352, 508
HpaI	GTTAAC	1 cut(s)	150
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	3 cut(s)	85, 229, 298
Hpy188III	TCNNGA	2 cut(s)	195, 320
Hpy8I	GTNNAC	1 cut(s)	150
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	4 cut(s)	80, 262, 346, 423
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	3 cut(s)	111, 207, 354
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	5 cut(s)	80, 173, 350, 506, 545
KspAI	GTTAAC	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	21
LmnI	GCTCC	2 cut(s)	322, 503
Lsp1109I	GCAGC	2 cut(s)	274, 501
LweI	GCATC	2 cut(s)	89, 193
MaeI	CTAG	4 cut(s)	158, 185, 359, 383
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	3 cut(s)	24, 279, 445
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	1 cut(s)	223
MlyI	GAGTC	2 cut(s)	346, 517
Mph1103I	ATGCAT	1 cut(s)	82
MseI	TTAA	6 cut(s)	51, 117, 129, 149, 176, 467
MslI	CAYNNNNRTG	1 cut(s)	540
MspA1I	CMGCKG	1 cut(s)	272
Mva1269I	GAATGC	1 cut(s)	161
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	46
NdeII	GATC	1 cut(s)	21
NheI	GCTAGC	1 cut(s)	358
NlaIII	CATG	5 cut(s)	80, 173, 350, 506, 545
NlaIV	GGNNCC	2 cut(s)	65, 499
NmuCI	GTSAC	1 cut(s)	134
NsiI	ATGCAT	1 cut(s)	82
NspI	RCATGY	1 cut(s)	80
PctI	GAATGC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	255
PkrI	GCNGC	2 cut(s)	264, 516
PleI	GAGTC	2 cut(s)	346, 516
PpsI	GAGTC	2 cut(s)	346, 516
Ppu21I	YACGTR	1 cut(s)	404
PspFI	CCCAGC	1 cut(s)	272
PspN4I	GGNNCC	2 cut(s)	65, 499
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	1 cut(s)	402
RsaNI	GTAC	1 cut(s)	401
RseI	CAYNNNNRTG	1 cut(s)	540
SaqAI	TTAA	6 cut(s)	51, 117, 129, 149, 176, 467
SatI	GCNGC	2 cut(s)	263, 515
Sau3AI	GATC	1 cut(s)	21
SchI	GAGTC	2 cut(s)	346, 517
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	2 cut(s)	89, 193
SmiMI	CAYNNNNRTG	1 cut(s)	540
Sse9I	AATT	1 cut(s)	223
SspMI	CTAG	4 cut(s)	158, 185, 359, 383
TaiI	ACGT	1 cut(s)	406
TasI	AATT	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	255
Tru1I	TTAA	6 cut(s)	51, 117, 129, 149, 176, 467
Tru9I	TTAA	6 cut(s)	51, 117, 129, 149, 176, 467
TscAI	CASTG	2 cut(s)	31, 297
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	2 cut(s)	262, 514
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	3 cut(s)	84, 180, 305
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	2 cut(s)	31, 297
XapI	RAATTY	1 cut(s)	223
XceI	RCATGY	1 cut(s)	80
XspI	CTAG	4 cut(s)	158, 185, 359, 383
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.