Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004911.1

Orthogroup ID

OG0018260

Physical Location & Seq

Genomic Coordinates Reverse (-)

5286 .. 6334

Gene Structure 1049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004911.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atggctctttgtttctttggcaccggccgacacagcaacgtcttcgacccattttccctctacatctgggagcccttcataggctctctcatcaactcctcctccactgacggcgacacctccgccttggcccatacccgaatcgactggaaggagacctcggatgcccatatcttcaaggcggacctccccggactgaagaaggaagaagtgaaggttgagctggagatgaattctggagctgaggttgtggaggtgggagaggcaagagtcgcagcggttctggaaaacgacaacggaggagacggtggtgacgaagtccttgacggaagggaattgaatgggaagtttggttggatttatgctcattacatgtggtctcttatatgtgttttcaatgcttacccattctccccattaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0022607 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

141

Amino Acids

15.57

Weight (kDa)

4.52

Isoelectric Point (pI)

29.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018260)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004911.1_g000001 Rmu_sc0031681.1_g000001 Rmu_sc0037657.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038110
rosa_samantha	Rh5CG324200 Rh5DG192400 Rh5DG507500 Rh6AG285100 Rh6CG150400 Rh6CG287800 Rh6DG280600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	20
AciI	CCGC	3 cut(s)	123, 182, 278
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	232
AcuI	CTGAAG	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	80
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	3 cut(s)	178, 340, 397
AluBI	AGCT	2 cut(s)	223, 242
AluI	AGCT	2 cut(s)	223, 242
Alw26I	GTCTC	3 cut(s)	149, 297, 384
AoxI	GGCC	2 cut(s)	25, 129
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	232
AspS9I	GGNCC	2 cut(s)	130, 184
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	34
BbvCI	CCTCAGC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	287
BceAI	ACGGC	1 cut(s)	127
BcgI	CGANNNNNNTGC	2 cut(s)	25, 59
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	3 cut(s)	149, 297, 384
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	192
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	2 cut(s)	130, 184
BmiI	GGNNCC	2 cut(s)	22, 72
BmrFI	CCNGG	1 cut(s)	192
BmsI	GCATC	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	34
BpmI	CTGGAG	2 cut(s)	245, 258
Bpu10I	CCTNAGC	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	192
BsaI	GGTCTC	2 cut(s)	149, 384
BsaJI	CCNNGG	3 cut(s)	126, 159, 190
BsaXI	ACNNNNNCTCC	6 cut(s)	86, 116, 231, 261, 395, 425
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	152
BseDI	CCNNGG	3 cut(s)	126, 159, 190
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	3 cut(s)	88, 91, 315
BseX3I	CGGCCG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	287
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	27, 131
BshNI	GGYRCC	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	24, 192
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmAI	GTCTC	3 cut(s)	149, 297, 384
BsmBI	CGTCTC	1 cut(s)	297
BsnI	GGCC	2 cut(s)	27, 131
Bso31I	GGTCTC	2 cut(s)	149, 384
Bsp1286I	GDGCHC	1 cut(s)	75
BspACI	CCGC	3 cut(s)	123, 182, 278
BspANI	GGCC	2 cut(s)	27, 131
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	22, 72
BspT107I	GGYRCC	1 cut(s)	20
BspTNI	GGTCTC	2 cut(s)	149, 384
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	3 cut(s)	126, 159, 190
BssT1I	CCWWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	308
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	169
BstMAI	GTCTC	3 cut(s)	149, 297, 384
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 272
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	190
BstV1I	GCAGC	1 cut(s)	287
BstV2I	GAAGAC	1 cut(s)	34
BstZI	CGGCCG	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	27, 131
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	105
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	130, 184
CviAII	CATG	1 cut(s)	373
CviJI	RGCY	7 cut(s)	5, 27, 73, 84, 131, 223, 242
CviKI_1	RGCY	7 cut(s)	5, 27, 73, 84, 131, 223, 242
DdeI	CTNAG	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	25
EagI	CGGCCG	1 cut(s)	25
EciI	GGCGGA	2 cut(s)	112, 197
EclXI	CGGCCG	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	75
Eco31I	GGTCTC	2 cut(s)	149, 384
Eco47I	GGWCC	1 cut(s)	184
Eco52I	CGGCCG	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	126
Esp3I	CGTCTC	1 cut(s)	297
FaeI	CATG	1 cut(s)	376
FaiI	YATR	7 cut(s)	80, 135, 171, 363, 374, 386, 388
FatI	CATG	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	276
GluI	GCNGC	1 cut(s)	276
GsuI	CTGGAG	2 cut(s)	245, 258
HaeIII	GGCC	2 cut(s)	27, 131
HapII	CCGG	2 cut(s)	24, 192
Hin1II	CATG	1 cut(s)	376
HinfI	GANTC	2 cut(s)	141, 270
HpaII	CCGG	2 cut(s)	24, 192
HphI	GGTGA	1 cut(s)	323
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	237, 284
HpyAV	CCTTC	5 cut(s)	85, 145, 196, 208, 324
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	39
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 272
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	376
LmnI	GCTCC	2 cut(s)	70, 239
LpnPI	CCDG	7 cut(s)	37, 52, 133, 205, 209, 222, 269
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	1 cut(s)	154
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	311
MboII	GAAGA	4 cut(s)	34, 166, 211, 218
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	3 cut(s)	232, 335, 421
MlyI	GAGTC	1 cut(s)	279
MmeI	TCCRAC	1 cut(s)	335
MseI	TTAA	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	2 cut(s)	24, 192
MspR9I	CCNGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	33, 272
NciI	CCSGG	1 cut(s)	192
NlaIII	CATG	1 cut(s)	376
NlaIV	GGNNCC	2 cut(s)	22, 72
NmuCI	GTSAC	1 cut(s)	311
NspI	RCATGY	1 cut(s)	376
PciI	ACATGT	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	141
PflFI	GACNNNGTC	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	277
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
PscI	ACATGT	1 cut(s)	372
PspN4I	GGNNCC	2 cut(s)	22, 72
PspPI	GGNCC	2 cut(s)	130, 184
PsyI	GACNNNGTC	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	419
SatI	GCNGC	1 cut(s)	276
Sau96I	GGNCC	2 cut(s)	130, 184
SchI	GAGTC	1 cut(s)	279
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	9 cut(s)	42, 122, 161, 189, 219, 225, 244, 249, 258
SfaNI	GCATC	1 cut(s)	154
SinI	GGWCC	1 cut(s)	184
Sse9I	AATT	3 cut(s)	232, 335, 421
SsiI	CCGC	3 cut(s)	123, 182, 278
StyD4I	CCNGG	1 cut(s)	190
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	45, 144
TasI	AATT	3 cut(s)	232, 335, 421
TfiI	GAWTC	1 cut(s)	141
Tru1I	TTAA	1 cut(s)	419
Tru9I	TTAA	1 cut(s)	419
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	2 cut(s)	67, 245
TspGWI	ACGGA	2 cut(s)	312, 342
TspRI	CASTG	1 cut(s)	112
Tth111I	GACNNNGTC	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	1 cut(s)	232
XceI	RCATGY	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.