Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0018260

Physical Location & Seq

Genomic Coordinates Forward (+)

55544183 .. 55547155

Gene Structure 2973 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00038110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAGGGAATTGGGGGAGGGAATGACGTCCCAAAAGAGGTCGTGGAGGTGGGAGAGGCAGGAGTCGCGGCAGTTCTGGAAAACGACGATGAAGGAGACGGTGGTGACGAAGTGGTGGATGGAAGGGAATTGAATGGGAAGTTTGCTCATGGTGGGTCAGATGACCAAACAACTTCGCATGCTTCTAAGATTGAGAGGCATTTTGCATTCAAGCATGAGCAAAATGACTATGCACTTGCTATAGCAGGGATGATACGTGGTTTACACCACCTCATGCTTTTTAGGAGTACACTAACTAATAAAGTTCTGTGCGCCATTCTTAATGGTTGTCCACATCTTGAGTCGCTTGATATTTGCTCTGGTGTTTTAATCTTAGATTGGGAGGAAAGGTGCGAAGAAGATGTGCTTAGCAAATTAAAGAATTGCGGCTTCCCAATGATTCTGAAATTTAAACTAATAAGGGAGGTAACTTCAAAGTCCGCCGGTGCGATAGAGCAAAGGAGGACGACGAAGCATAAGATGGAGAAATTCTTGAGTTGGGACTGGATATTCATCTGTCTTACCGGTTTAAGAGGGACAAAGTTTGGTATACTTACATGCCATTTGCAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

204

Amino Acids

22.51

Weight (kDa)

5.58

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018260)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004911.1_g000001 Rmu_sc0031681.1_g000001 Rmu_sc0037657.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038110
rosa_samantha	Rh5CG324200 Rh5DG192400 Rh5DG507500 Rh6AG285100 Rh6CG150400 Rh6CG287800 Rh6DG280600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	30
AccI	GTMKAC	1 cut(s)	589
AccII	CGCG	1 cut(s)	68
AciI	CCGC	3 cut(s)	68, 426, 480
AcsI	RAATTY	2 cut(s)	446, 527
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgeI	ACCGGT	1 cut(s)	563
AgsI	TTSAA	3 cut(s)	133, 211, 474
Alw26I	GTCTC	1 cut(s)	90
ApoI	RAATTY	2 cut(s)	446, 527
AsiGI	ACCGGT	1 cut(s)	563
AspLEI	GCGC	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	116
BccI	CCATC	2 cut(s)	113, 514
BcoDI	GTCTC	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	240
BisI	GCNGC	2 cut(s)	69, 427
BlpI	GCTNAGC	1 cut(s)	407
BlsI	GCNGC	2 cut(s)	70, 428
Bpu1102I	GCTNAGC	1 cut(s)	407
BpuEI	CTTGAG	2 cut(s)	359, 553
BsaAI	YACGTR	1 cut(s)	257
BsaBI	GATNNNNATC	1 cut(s)	551
BsaHI	GRCGYC	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	563
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse118I	RCCGGY	2 cut(s)	482, 563
Bse1I	ACTGG	1 cut(s)	548
Bse8I	GATNNNNATC	1 cut(s)	551
BseGI	GGATG	2 cut(s)	124, 255
BseJI	GATNNNNATC	1 cut(s)	551
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseNI	ACTGG	1 cut(s)	548
Bsh1236I	CGCG	1 cut(s)	68
BshTI	ACCGGT	1 cut(s)	563
BsiSI	CCGG	2 cut(s)	483, 564
BslFI	GGGAC	3 cut(s)	14, 554, 589
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	90
BsmBI	CGTCTC	1 cut(s)	90
BsmFI	GGGAC	3 cut(s)	14, 554, 589
BsmI	GAATGC	1 cut(s)	206
Bsp1720I	GCTNAGC	1 cut(s)	407
BspACI	CCGC	3 cut(s)	68, 426, 480
BspFNI	CGCG	1 cut(s)	68
BsrFI	RCCGGY	2 cut(s)	482, 563
BsrI	ACTGG	1 cut(s)	548
BssAI	RCCGGY	2 cut(s)	482, 563
BssNAI	GTATAC	1 cut(s)	590
BssNI	GRCGYC	1 cut(s)	27
Bst1107I	GTATAC	1 cut(s)	590
Bst4CI	ACNGT	1 cut(s)	101
BstACI	GRCGYC	1 cut(s)	27
BstBAI	YACGTR	1 cut(s)	257
BstC8I	GCNNGC	2 cut(s)	180, 609
BstDEI	CTNAG	3 cut(s)	186, 373, 407
BstF5I	GGATG	2 cut(s)	124, 255
BstFNI	CGCG	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	314
BstMAI	GTCTC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNSI	RCATGY	2 cut(s)	182, 600
BstSFI	CTRYAG	1 cut(s)	240
BstUI	CGCG	1 cut(s)	68
BstZ17I	GTATAC	1 cut(s)	590
BtsCI	GGATG	2 cut(s)	124, 255
Cac8I	GCNNGC	2 cut(s)	180, 609
CfoI	GCGC	1 cut(s)	314
Cfr10I	RCCGGY	2 cut(s)	482, 563
Csp6I	GTAC	1 cut(s)	288
CspAI	ACCGGT	1 cut(s)	563
CviAII	CATG	5 cut(s)	149, 179, 215, 274, 597
CviJI	RGCY	1 cut(s)	429
CviKI_1	RGCY	1 cut(s)	429
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	3 cut(s)	186, 373, 407
DraI	TTTAAA	1 cut(s)	451
EciI	GGCGGA	1 cut(s)	469
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	5 cut(s)	152, 182, 218, 277, 600
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	3 cut(s)	14, 554, 589
FatI	CATG	5 cut(s)	148, 178, 214, 273, 596
FblI	GTMKAC	1 cut(s)	589
Fnu4HI	GCNGC	2 cut(s)	69, 427
FokI	GGATG	2 cut(s)	131, 262
Fsp4HI	GCNGC	2 cut(s)	69, 427
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	2 cut(s)	69, 427
HapII	CCGG	2 cut(s)	483, 564
HhaI	GCGC	1 cut(s)	314
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	5 cut(s)	152, 182, 218, 277, 600
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HinfI	GANTC	3 cut(s)	63, 341, 439
HpaII	CCGG	2 cut(s)	483, 564
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	4 cut(s)	263, 290, 332, 590
Hpy188I	TCNGA	2 cut(s)	160, 444
Hpy188III	TCNNGA	3 cut(s)	77, 338, 532
Hpy8I	GTNNAC	4 cut(s)	263, 290, 332, 590
Hpy99I	CGWCG	2 cut(s)	89, 511
HpyAV	CCTTC	2 cut(s)	86, 117
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	2 cut(s)	27, 256
HpyCH4V	TGCA	3 cut(s)	206, 233, 607
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	3 cut(s)	186, 373, 407
HpySE526I	ACGT	2 cut(s)	27, 256
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	5 cut(s)	152, 182, 218, 277, 600
HspAI	GCGC	1 cut(s)	312
LpnPI	CCDG	7 cut(s)	45, 62, 231, 345, 496, 529, 577
MaeII	ACGT	2 cut(s)	27, 256
MaeIII	GTNAC	2 cut(s)	104, 466
MboII	GAAGA	2 cut(s)	407, 410
MluCI	AATT	6 cut(s)	9, 128, 413, 421, 446, 527
MlyI	GAGTC	2 cut(s)	72, 350
MseI	TTAA	5 cut(s)	321, 368, 416, 450, 569
MspI	CCGG	2 cut(s)	483, 564
Mva1269I	GAATGC	1 cut(s)	206
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	65
NlaIII	CATG	5 cut(s)	152, 182, 218, 277, 600
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	2 cut(s)	182, 600
PaeI	GCATGC	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PctI	GAATGC	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	439
PinAI	ACCGGT	1 cut(s)	563
PkrI	GCNGC	2 cut(s)	70, 428
PleI	GAGTC	2 cut(s)	71, 349
PpsI	GAGTC	2 cut(s)	71, 349
Ppu21I	YACGTR	1 cut(s)	257
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SaqAI	TTAA	5 cut(s)	321, 368, 416, 450, 569
SatI	GCNGC	2 cut(s)	69, 427
SchI	GAGTC	2 cut(s)	72, 350
SetI	ASST	7 cut(s)	30, 42, 51, 259, 273, 392, 468
SfcI	CTRYAG	1 cut(s)	240
SgrAI	CRCCGGYG	1 cut(s)	482
SmlI	CTYRAG	2 cut(s)	338, 532
SmoI	CTYRAG	2 cut(s)	338, 532
SphI	GCATGC	1 cut(s)	182
Sse9I	AATT	6 cut(s)	9, 128, 413, 421, 446, 527
SsiI	CCGC	3 cut(s)	68, 426, 480
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	2 cut(s)	30, 259
TasI	AATT	6 cut(s)	9, 128, 413, 421, 446, 527
TatI	WGTACW	1 cut(s)	287
TauI	GCSGC	2 cut(s)	71, 429
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	5 cut(s)	321, 368, 416, 450, 569
Tru9I	TTAA	5 cut(s)	321, 368, 416, 450, 569
TseFI	GTSAC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	105, 541
XapI	RAATTY	2 cut(s)	446, 527
XceI	RCATGY	2 cut(s)	182, 600
XmiI	GTMKAC	1 cut(s)	589
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.