Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037657.1

Orthogroup ID

OG0018260

Physical Location & Seq

Genomic Coordinates Reverse (-)

75 .. 1357

Gene Structure 1283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037657.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgcaaagactcgaaacggtgccgcctcacctgaagacgcagaagctctggtcgaaactatctcaccgaaagcggctgccagagtggggcaaagttaactcttctgagtcgtcgtgcgtggagtttaattctggagctaacattggaggcttcattgagagaaagttgaagctaaagtcaaagagcagcattgcgaaggtaattggaggttataaagcagttatcgaatcagcagtttccgagtctgataaggtctcagtgaaattcaaggagcaagaggtcatttcactcaacttcggcgtgcaattatgctcggatgcgacagtatcagacgtttggggtggtggtgtcgttggggtggcggatccatttggggatcgagtggggtgttacatgcagatgtggtttgggggacgggtagatttcgattctcaatccgccggtgaatgtccgaagctgagtataggctggaatgaggaagatcaatggtggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

164

Amino Acids

18.16

Weight (kDa)

7.64

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018260)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004911.1_g000001 Rmu_sc0031681.1_g000001 Rmu_sc0037657.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038110
rosa_samantha	Rh5CG324200 Rh5DG192400 Rh5DG507500 Rh6AG285100 Rh6CG150400 Rh6CG287800 Rh6DG280600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	19
AciI	CCGC	4 cut(s)	23, 73, 362, 438
AclWI	GGATC	3 cut(s)	359, 372, 384
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	169, 268
AluBI	AGCT	4 cut(s)	46, 137, 172, 457
AluI	AGCT	4 cut(s)	46, 137, 172, 457
Alw26I	GTCTC	1 cut(s)	259
AlwI	GGATC	3 cut(s)	359, 372, 384
ApeKI	GCWGC	2 cut(s)	76, 186
ApoI	RAATTY	1 cut(s)	263
AsuHPI	GGTGA	3 cut(s)	20, 56, 455
BamHI	GGATCC	1 cut(s)	364
BanI	GGYRCC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	63, 198
BcoDI	GTCTC	1 cut(s)	259
BisI	GCNGC	4 cut(s)	23, 74, 77, 187
BlsI	GCNGC	4 cut(s)	24, 75, 78, 188
BmiI	GGNNCC	2 cut(s)	21, 366
BmsI	GCATC	1 cut(s)	307
BpiI	GAAGAC	1 cut(s)	41
BpmI	CTGGAG	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse118I	RCCGGY	1 cut(s)	440
Bse3DI	GCAATG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	3 cut(s)	96, 270, 449
BseXI	GCAGC	2 cut(s)	63, 198
BshNI	GGYRCC	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	426
Bso31I	GGTCTC	1 cut(s)	259
Bsp143I	GATC	3 cut(s)	364, 376, 481
BspACI	CCGC	4 cut(s)	23, 73, 362, 438
BspCNI	CTCAG	3 cut(s)	97, 269, 450
BspLI	GGNNCC	2 cut(s)	21, 366
BspPI	GGATC	3 cut(s)	359, 372, 384
BspT107I	GGYRCC	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	259
BsrDI	GCAATG	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	440
BssAI	RCCGGY	1 cut(s)	440
BssMI	GATC	3 cut(s)	364, 376, 481
Bst4CI	ACNGT	2 cut(s)	19, 325
Bst6I	CTCTTC	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	302
BstDEI	CTNAG	3 cut(s)	105, 256, 458
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	3 cut(s)	367, 379, 484
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	3 cut(s)	364, 376, 481
BstNSI	RCATGY	1 cut(s)	397
BstV1I	GCAGC	2 cut(s)	63, 198
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BtsCI	GGATG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	302
Cfr10I	RCCGGY	1 cut(s)	440
CseI	GACGC	1 cut(s)	46
CviAII	CATG	1 cut(s)	394
CviJI	RGCY	7 cut(s)	46, 76, 137, 150, 172, 457, 468
CviKI_1	RGCY	7 cut(s)	46, 76, 137, 150, 172, 457, 468
DdeI	CTNAG	3 cut(s)	105, 256, 458
DpnI	GATC	3 cut(s)	366, 378, 483
DpnII	GATC	3 cut(s)	364, 376, 481
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
EciI	GGCGGA	2 cut(s)	377, 427
Eco31I	GGTCTC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	53
FaeI	CATG	1 cut(s)	397
FaiI	YATR	4 cut(s)	213, 310, 395, 464
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	1 cut(s)	393
Fnu4HI	GCNGC	4 cut(s)	23, 74, 77, 187
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	4 cut(s)	23, 74, 77, 187
GluI	GCNGC	4 cut(s)	23, 74, 77, 187
GsuI	CTGGAG	1 cut(s)	153
HapII	CCGG	1 cut(s)	441
HgaI	GACGC	1 cut(s)	46
Hin1II	CATG	1 cut(s)	397
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	5 cut(s)	9, 107, 227, 242, 428
HpaI	GTTAAC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	3 cut(s)	20, 56, 455
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	6 cut(s)	106, 241, 247, 316, 331, 453
Hpy188III	TCNNGA	1 cut(s)	132
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	115
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	2 cut(s)	19, 325
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	3 cut(s)	4, 304, 397
HpyF3I	CTNAG	3 cut(s)	105, 256, 458
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	397
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	3 cut(s)	364, 376, 481
LmnI	GCTCC	2 cut(s)	134, 271
LpnPI	CCDG	6 cut(s)	34, 44, 93, 117, 454, 454
Lsp1109I	GCAGC	2 cut(s)	63, 198
LweI	GCATC	1 cut(s)	307
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	3 cut(s)	366, 378, 483
MboI	GATC	3 cut(s)	364, 376, 481
MboII	GAAGA	3 cut(s)	46, 93, 491
MflI	RGATCY	1 cut(s)	364
MluCI	AATT	4 cut(s)	127, 201, 263, 305
MlyI	GAGTC	3 cut(s)	3, 116, 251
MnlI	CCTC	5 cut(s)	36, 140, 200, 271, 469
MseI	TTAA	2 cut(s)	96, 126
MslI	CAYNNNNRTG	1 cut(s)	398
MspI	CCGG	1 cut(s)	441
NdeII	GATC	3 cut(s)	364, 376, 481
NlaIII	CATG	1 cut(s)	397
NlaIV	GGNNCC	2 cut(s)	21, 366
NspI	RCATGY	1 cut(s)	397
PfeI	GAWTC	2 cut(s)	227, 428
PkrI	GCNGC	4 cut(s)	24, 75, 78, 188
PleI	GAGTC	3 cut(s)	3, 115, 250
PpsI	GAGTC	3 cut(s)	3, 115, 250
PsiI	TTATAA	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	21, 366
PsuI	RGATCY	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	2 cut(s)	96, 126
SatI	GCNGC	4 cut(s)	23, 74, 77, 187
Sau3AI	GATC	3 cut(s)	364, 376, 481
SchI	GAGTC	3 cut(s)	3, 116, 251
SfaNI	GCATC	1 cut(s)	307
SgrAI	CRCCGGYG	1 cut(s)	440
SmiMI	CAYNNNNRTG	1 cut(s)	398
Sse9I	AATT	4 cut(s)	127, 201, 263, 305
SsiI	CCGC	4 cut(s)	23, 73, 362, 438
TaaI	ACNGT	2 cut(s)	19, 325
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	5 cut(s)	12, 53, 225, 379, 426
TasI	AATT	4 cut(s)	127, 201, 263, 305
TauI	GCSGC	2 cut(s)	25, 76
TfiI	GAWTC	2 cut(s)	227, 428
Tru1I	TTAA	2 cut(s)	96, 126
Tru9I	TTAA	2 cut(s)	96, 126
TscAI	CASTG	1 cut(s)	264
TseI	GCWGC	2 cut(s)	76, 186
TspDTI	ATGAA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	264
XapI	RAATTY	1 cut(s)	263
XceI	RCATGY	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.