Rh5DG192400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0018260
Physical Location & Seq
Forward (+)
21431301 .. 21434035
2735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG192400.1

Sequence Viewer

Length: 417 bp
ATGATAATCACTGTGGCGCAGCTCATCCCGAACCGTGTCCATTCACTCTCAATCGAGAACCAGAGCGAGCAGCAAGTCAGCGACGAGCCTGGCCTAAGAGTCGCCGGCAACGACGACCCAAGATCCGTTGAGGAGATCGGCGGCGTCGAATCGGCCGAGGCCAAGCTTGTGGTAATCGAGGGGGGGGGGATCAGAATCGGGGGAGTGAGTGACGTCCCAAACGAGGTCGTGGAGGTGGGAGAGGCAGGAGTCGTGGCGGTTCTGGAAAACGACGACGGAGGAGACGATGGTGACGAAGCCGGTGACGAAAGGGAAGTAAGGGGTGAGGTGGATGCCGATGGCGAGAGTGATGAAGAGGGCGCCGCTAAAGAAGAGCATCTTGTTGCAGCTGAGATGATAACCGGCCATGCCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

14.32

Weight (kDa)

4.05

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 216
AccB1I GGYRCC 1 cut(s) 359
AciI CCGC 3 cut(s) 141, 257, 363
AclWI GGATC 2 cut(s) 117, 197
AcoI YGGCCR 2 cut(s) 153, 403
AcyI GRCGYC 3 cut(s) 144, 213, 360
AfiI CCNNNNNNNGG 1 cut(s) 223
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 3 cut(s) 22, 166, 389
AluI AGCT 3 cut(s) 22, 166, 389
Alw26I GTCTC 1 cut(s) 276
AlwI GGATC 2 cut(s) 117, 197
AoxI GGCC 4 cut(s) 91, 153, 159, 403
ApeKI GCWGC 3 cut(s) 19, 70, 386
AspLEI GCGC 2 cut(s) 19, 362
AsuHPI GGTGA 3 cut(s) 302, 314, 335
BanI GGYRCC 1 cut(s) 359
BbvI GCAGC 3 cut(s) 31, 82, 398
BccI CCATC 2 cut(s) 281, 332
BciT130I CCWGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 363
BisI GCNGC 5 cut(s) 20, 71, 142, 363, 387
BlsI GCNGC 5 cut(s) 21, 72, 143, 364, 388
Bme1390I CCNGG 1 cut(s) 90
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 90
BmsI GCATC 2 cut(s) 322, 385
BsaBI GATNNNNATC 1 cut(s) 194
BsaHI GRCGYC 3 cut(s) 144, 213, 360
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse118I RCCGGY 3 cut(s) 104, 299, 401
Bse8I GATNNNNATC 1 cut(s) 194
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 2 cut(s) 24, 337
BseJI GATNNNNATC 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMII CTCAG 1 cut(s) 381
BseRI GAGGAG 2 cut(s) 146, 294
BseX3I CGGCCG 1 cut(s) 153
BseXI GCAGC 3 cut(s) 31, 82, 398
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 4 cut(s) 93, 155, 161, 405
BshNI GGYRCC 1 cut(s) 359
BsiEI CGRYCG 1 cut(s) 156
BsiSI CCGG 3 cut(s) 105, 300, 402
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 223
BsmAI GTCTC 1 cut(s) 276
BsmBI CGTCTC 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 200
BsnI GGCC 4 cut(s) 93, 155, 161, 405
Bsp143I GATC 3 cut(s) 122, 135, 189
BspACI CCGC 3 cut(s) 141, 257, 363
BspANI GGCC 4 cut(s) 93, 155, 161, 405
BspCNI CTCAG 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 361
BspPI GGATC 2 cut(s) 117, 197
BspQI GCTCTTC 1 cut(s) 366
BspT107I GGYRCC 1 cut(s) 359
BsrFI RCCGGY 3 cut(s) 104, 299, 401
BssAI RCCGGY 3 cut(s) 104, 299, 401
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 3 cut(s) 122, 135, 189
BssNI GRCGYC 3 cut(s) 144, 213, 360
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 13, 35
Bst6I CTCTTC 2 cut(s) 348, 366
BstACI GRCGYC 3 cut(s) 144, 213, 360
BstC8I GCNNGC 2 cut(s) 68, 106
BstDEI CTNAG 2 cut(s) 95, 390
BstF5I GGATG 2 cut(s) 24, 337
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 2 cut(s) 19, 362
BstKTI GATC 3 cut(s) 125, 138, 192
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 3 cut(s) 122, 135, 189
BstMCI CGRYCG 1 cut(s) 156
BstNI CCWGG 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 88
BstV1I GCAGC 3 cut(s) 31, 82, 398
BstX2I RGATCY 1 cut(s) 122
BstXI CCANNNNNNTGG 1 cut(s) 169
BstYI RGATCY 1 cut(s) 122
BstZI CGGCCG 1 cut(s) 153
BsuRI GGCC 4 cut(s) 93, 155, 161, 405
BtsCI GGATG 2 cut(s) 24, 337
BtsIMutI CAGTG 1 cut(s) 9
Cac8I GCNNGC 2 cut(s) 68, 106
CfoI GCGC 2 cut(s) 19, 362
Cfr10I RCCGGY 3 cut(s) 104, 299, 401
CseI GACGC 1 cut(s) 133
CviAII CATG 1 cut(s) 407
CviJI RGCY 9 cut(s) 22, 88, 93, 155, 161, 166, 299, 389, 405
CviKI_1 RGCY 9 cut(s) 22, 88, 93, 155, 161, 166, 299, 389, 405
DdeI CTNAG 2 cut(s) 95, 390
DinI GGCGCC 1 cut(s) 361
DpnI GATC 3 cut(s) 124, 137, 191
DpnII GATC 3 cut(s) 122, 135, 189
EaeI YGGCCR 2 cut(s) 153, 403
EagI CGGCCG 1 cut(s) 153
Eam1104I CTCTTC 2 cut(s) 348, 366
EarI CTCTTC 2 cut(s) 348, 366
EclXI CGGCCG 1 cut(s) 153
Eco52I CGGCCG 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 88
EgeI GGCGCC 1 cut(s) 361
EheI GGCGCC 1 cut(s) 361
Esp3I CGTCTC 1 cut(s) 276
FaeI CATG 1 cut(s) 410
FaiI YATR 1 cut(s) 408
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FaqI GGGAC 1 cut(s) 200
FatI CATG 1 cut(s) 406
Fnu4HI GCNGC 5 cut(s) 20, 71, 142, 363, 387
FokI GGATG 2 cut(s) 11, 344
Fsp4HI GCNGC 5 cut(s) 20, 71, 142, 363, 387
GlaI GCGC 2 cut(s) 18, 361
GluI GCNGC 5 cut(s) 20, 71, 142, 363, 387
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 4 cut(s) 93, 155, 161, 405
HapII CCGG 3 cut(s) 105, 300, 402
HgaI GACGC 1 cut(s) 133
HhaI GCGC 2 cut(s) 19, 362
Hin1I GRCGYC 3 cut(s) 144, 213, 360
Hin1II CATG 1 cut(s) 410
Hin6I GCGC 2 cut(s) 17, 360
HinP1I GCGC 2 cut(s) 17, 360
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 4 cut(s) 99, 149, 195, 249
HpaII CCGG 3 cut(s) 105, 300, 402
HphI GGTGA 3 cut(s) 302, 314, 335
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 3 cut(s) 28, 55, 263
Hpy99I CGWCG 5 cut(s) 86, 116, 149, 275, 278
HpyCH4III ACNGT 2 cut(s) 13, 35
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 1 cut(s) 386
HpyF3I CTNAG 2 cut(s) 95, 390
HpySE526I ACGT 1 cut(s) 213
Hsp92I GRCGYC 3 cut(s) 144, 213, 360
Hsp92II CATG 1 cut(s) 410
HspAI GCGC 2 cut(s) 17, 360
KasI GGCGCC 1 cut(s) 359
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 3 cut(s) 122, 135, 189
LguI GCTCTTC 1 cut(s) 366
LpnPI CCDG 7 cut(s) 74, 75, 102, 118, 231, 248, 313
Lsp1109I GCAGC 3 cut(s) 31, 82, 398
LweI GCATC 2 cut(s) 322, 385
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 3 cut(s) 209, 290, 302
MalI GATC 3 cut(s) 124, 137, 191
MboI GATC 3 cut(s) 122, 135, 189
MboII GAAGA 2 cut(s) 365, 383
MflI RGATCY 1 cut(s) 122
Mly113I GGCGCC 1 cut(s) 360
MlyI GAGTC 2 cut(s) 108, 258
MnlI CCTC 9 cut(s) 124, 151, 172, 217, 226, 235, 272, 319, 349
MroNI GCCGGC 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 389
MspI CCGG 3 cut(s) 105, 300, 402
MspR9I CCNGG 1 cut(s) 90
MvaI CCWGG 1 cut(s) 90
NaeI GCCGGC 1 cut(s) 106
NarI GGCGCC 1 cut(s) 360
NdeII GATC 3 cut(s) 122, 135, 189
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 1 cut(s) 410
NlaIV GGNNCC 1 cut(s) 361
NmeAIII GCCGAG 1 cut(s) 181
NmuCI GTSAC 3 cut(s) 209, 290, 302
PciSI GCTCTTC 1 cut(s) 366
PcsI WCGNNNNNNNCGW 6 cut(s) 108, 144, 153, 219, 282, 291
PdiI GCCGGC 1 cut(s) 106
PfeI GAWTC 2 cut(s) 149, 195
PkrI GCNGC 5 cut(s) 21, 72, 143, 364, 388
PleI GAGTC 2 cut(s) 107, 257
PluTI GGCGCC 1 cut(s) 363
PpsI GAGTC 2 cut(s) 107, 257
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 361
PsuI RGATCY 1 cut(s) 122
PvuII CAGCTG 1 cut(s) 389
SapI GCTCTTC 1 cut(s) 366
SatI GCNGC 5 cut(s) 20, 71, 142, 363, 387
Sau3AI GATC 3 cut(s) 122, 135, 189
SchI GAGTC 2 cut(s) 108, 258
ScrFI CCNGG 1 cut(s) 90
SetI ASST 7 cut(s) 24, 168, 216, 228, 237, 330, 391
SfaNI GCATC 2 cut(s) 322, 385
SfoI GGCGCC 1 cut(s) 361
SsiI CCGC 3 cut(s) 141, 257, 363
SspDI GGCGCC 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 88
TaaI ACNGT 2 cut(s) 13, 35
TaiI ACGT 1 cut(s) 216
TaqI TCGA 3 cut(s) 54, 147, 177
TauI GCSGC 2 cut(s) 144, 365
TfiI GAWTC 2 cut(s) 149, 195
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 3 cut(s) 209, 290, 302
TseI GCWGC 3 cut(s) 19, 70, 386
Tsp45I GTSAC 3 cut(s) 209, 290, 302
TspDTI ATGAA 1 cut(s) 366
TspGWI ACGGA 2 cut(s) 115, 291
TspRI CASTG 1 cut(s) 16
ZraI GACGTC 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.