Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0018260

Physical Location & Seq

Genomic Coordinates Reverse (-)

46559993 .. 46562845

Gene Structure 2853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG287800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGACAGCGGTGAAGACATTAGCTGAGCTCGTGGAGGTGGGAGAGGTAGGAGTACCAGCGGTTCTGGAAAATGACGATGGAGGAGACGGTGGTGACAAAGTCATTGATGGAAGGGAATTGAATGGGAAAAAGCGGCTGCCGGAGTGGGGCAAAGTTAACGCTTCTGAGTCGTCGTGCGTGGAGTCTAATTCTGGAGCTGATATTGGAGGCTTCATTGAGAGAAAGTTGAAGCTGAAGTCAAAGAGCAGAATTGCGAAGGTAATTGGAGGTTATAAAGCAGTTATTGAATTAGCGGTTTCCGAGTCCGATAAGGTCTCAGTGAAATTCAAGGAGCAAGAGTTCATTTCACTCAACTCCGGTGTGCAATTATGCTCGGAAGTGACAGTATCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

131

Amino Acids

13.88

Weight (kDa)

5.05

Isoelectric Point (pI)

29.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018260)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004911.1_g000001 Rmu_sc0031681.1_g000001 Rmu_sc0037657.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038110
rosa_samantha	Rh5CG324200 Rh5DG192400 Rh5DG507500 Rh6AG285100 Rh6CG150400 Rh6CG287800 Rh6DG280600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
AciI	CCGC	4 cut(s)	8, 59, 133, 293
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	4 cut(s)	121, 229, 287, 328
AloI	GAACNNNNNNTCC	2 cut(s)	323, 355
AluBI	AGCT	4 cut(s)	23, 28, 197, 232
AluI	AGCT	4 cut(s)	23, 28, 197, 232
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	2 cut(s)	78, 319
ApeKI	GCWGC	1 cut(s)	136
ApoI	RAATTY	1 cut(s)	323
AsuHPI	GGTGA	2 cut(s)	22, 104
BanII	GRGCYC	1 cut(s)	30
BauI	CACGAG	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	2 cut(s)	71, 101
BcoDI	GTCTC	2 cut(s)	78, 319
BisI	GCNGC	2 cut(s)	134, 137
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	2 cut(s)	135, 138
BpiI	GAAGAC	1 cut(s)	20
BpmI	CTGGAG	1 cut(s)	213
Bpu1102I	GCTNAGC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	319
BsaWI	WCCGGW	1 cut(s)	356
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMII	CTCAG	3 cut(s)	15, 156, 330
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	2 cut(s)	140, 357
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	2 cut(s)	78, 319
BsmBI	CGTCTC	1 cut(s)	78
Bso31I	GGTCTC	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	4 cut(s)	8, 59, 133, 293
BspCNI	CTCAG	3 cut(s)	16, 157, 329
BspTNI	GGTCTC	1 cut(s)	319
BssSI	CACGAG	1 cut(s)	29
Bst2BI	CACGAG	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	89, 385
BstDEI	CTNAG	3 cut(s)	24, 165, 316
BstMAI	GTCTC	2 cut(s)	78, 319
BstV1I	GCAGC	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	53
CviJI	RGCY	6 cut(s)	23, 28, 136, 197, 210, 232
CviKI_1	RGCY	6 cut(s)	23, 28, 136, 197, 210, 232
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	3 cut(s)	24, 165, 316
Ecl136II	GAGCTC	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	30
Eco31I	GGTCTC	1 cut(s)	319
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	30
Esp3I	CGTCTC	1 cut(s)	78
FaiI	YATR	2 cut(s)	273, 370
Fnu4HI	GCNGC	2 cut(s)	134, 137
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	2 cut(s)	134, 137
GluI	GCNGC	2 cut(s)	134, 137
GsuI	CTGGAG	1 cut(s)	213
HapII	CCGG	2 cut(s)	140, 357
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	3 cut(s)	167, 182, 302
HpaI	GTTAAC	1 cut(s)	157
HpaII	CCGG	2 cut(s)	140, 357
HphI	GGTGA	2 cut(s)	22, 104
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	5 cut(s)	166, 301, 307, 376, 391
Hpy188III	TCNNGA	2 cut(s)	65, 192
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	2 cut(s)	105, 250
HpyCH4III	ACNGT	2 cut(s)	89, 385
HpyCH4V	TGCA	1 cut(s)	364
HpyF3I	CTNAG	3 cut(s)	24, 165, 316
KspAI	GTTAAC	1 cut(s)	157
LmnI	GCTCC	2 cut(s)	194, 331
LpnPI	CCDG	5 cut(s)	50, 69, 153, 177, 370
Lsp1109I	GCAGC	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	92, 379
MboII	GAAGA	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	7 cut(s)	116, 187, 249, 261, 287, 323, 365
MlyI	GAGTC	3 cut(s)	176, 191, 311
MnlI	CCTC	5 cut(s)	28, 37, 74, 200, 260
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	8, 59
MspI	CCGG	2 cut(s)	140, 357
NmuCI	GTSAC	2 cut(s)	92, 379
PflFI	GACNNNGTC	1 cut(s)	98
PkrI	GCNGC	2 cut(s)	135, 138
PleI	GAGTC	3 cut(s)	175, 190, 310
PpsI	GAGTC	3 cut(s)	175, 190, 310
PsiI	TTATAA	1 cut(s)	273
Psp124BI	GAGCTC	1 cut(s)	30
PsrI	GAACNNNNNNTAC	2 cut(s)	45, 77
PsyI	GACNNNGTC	1 cut(s)	98
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	2 cut(s)	134, 137
SchI	GAGTC	3 cut(s)	176, 191, 311
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	9 cut(s)	25, 30, 39, 48, 199, 234, 261, 271, 315
Sse9I	AATT	7 cut(s)	116, 187, 249, 261, 287, 323, 365
SsiI	CCGC	4 cut(s)	8, 59, 133, 293
SstI	GAGCTC	1 cut(s)	30
TaaI	ACNGT	2 cut(s)	89, 385
TasI	AATT	7 cut(s)	116, 187, 249, 261, 287, 323, 365
TauI	GCSGC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	2 cut(s)	92, 379
TseI	GCWGC	1 cut(s)	136
Tsp45I	GTSAC	2 cut(s)	92, 379
TspDTI	ATGAA	2 cut(s)	202, 331
TspRI	CASTG	1 cut(s)	324
Tth111I	GACNNNGTC	1 cut(s)	98
XapI	RAATTY	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.