Rmu_sc0005002.1_g000001

N-terminal region of Chorein or VPS13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005002.1
OG0007959
Physical Location & Seq
Reverse (-)
95 .. 8178
8084 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 3054 bp
atggagacccttctgggtcgagcgctggagtatactctcaagtactggctcaaatccttctccagagaccagttcaagtggcagggacggacggttcagctttccaatttagatatggacggcgatgctttgcactccagcatgggattaccgccggcgctgcacgtgaccacggccagagtcggcaaacttgtgatagtgctcccatcatcgttgagcaatgttcaagtggaaccgatagtagtgcagattgacaagctggatttggttttagaggagaattcggagttggatgcgagaaacagtcctagcagttcgccatcatccactagctccgggaaaggaagtggttatggatttgctgataagattgcagatggaatgactatagagattcacacagttaatcttctacttgaaacttgtgggggtggtcgccaaggaggggcagcttgggcatctcctctggcttctatcactatacacaaccttttgctgtattctactaatgaaaattggcaggtagtaaatcttaaggaagcgcgggagttctccaccaacaaaaagttcatttatgttttcaaaaaacttgagtgggaatctttgtccatcgatctcctgcctcaccctgatatgttcacggatgctaatatagcgagcactcaaaatggaggaacccagagagatgatgatggtgcgaagcgagctttctttggtggggagcgctttatagaaggaatttcaggagaagcttatatcacagtgcaaaggactgaattaaatagtccactcgggcttgaggttcagttacatatcacagaagccatttgtcctgcaataagtgaaccaggactacgtgctcttctccgctttatgactggattatatgtctgtctgaatagaggagatgttgattcaaatactcagcagcggtcaactgaagcagcaggccgttctatcgtttcaattgttgtagatcacatatttctctgcattaaagatactgaattcaagcttgaacttttgatgcagtcactcttcttttcacggacaagtgtttctgatggagaaattgacaataacttgtctaaggttatgattggtgggctctttttaagggatacctattcaagacctccttgcaccttagtgcaaccatcaatggatgccatttccgacgaacctgtgcatgttcctgactttggtaaggacttttgccctcccatatatcctttgggagctcagcagtggcagttgatcgtgggtgtccctcttttatgccttcattctcttcagaccaagccctcccctgtgcctccagcttttgctacacaaacagtcattaattgccaacccctgatgcatcaactggttgaccttcccagagacagaagcaagaagaaatggactaccacagcatcacaccttactttgtctctcgaaacgtgtactgcatcagctggacttcagagttctcttgatgggacctcaggcttgtggagatgtgttgagctgaaagatgcttgcatagaagtagctatggtaactgctgatgggagcccattaacaaatgttcctcctcctggtggtattgtcaggatagggctagcttgtgaaaagtatctctcaaatacttctgttgaacagttgtattttgttttggatctttatgcgtactttggcagagttagtgaaaagatagttcttgttggaaaatatactagaccaaagacgagtacggatgatacgttcaaggggaagctaattgacaaggttcccaatgatacagcagttagtttaatggtgaataatcttcagctacgatttctggaatcatcttccatgcatgttgaaggaacgcctctagttcagtttgttgggcatgatctctttataagagttactcacagaactcttggtggtgcagttgctgtttcctccattatacgttgggatagcgttgaggtggactgtatagacagtgagggaaacttggcatctgagaatggcagagatttaatttctattgaaaatggtcatggtgttttggcgagtggaaatgggtatcctcaactaagacctgtcttttggatagatagccaaataaaccattcatcaaatggtaaagctattgtagatcgatttcttgacataaacgtggaacatgtaattcctttaaatgaacaagatgtagagtgtcacagtttgaatgtgtcagcttgtatttctggcattcgcctaggtggcggaatgaactatgctgaatccttgctgcatcgctttggaatacttgaggctgatggtggtcctgggaaggggctatctaaagagttggagaatttacgagcaggccccctttcaaaaatttttgaaccatcacctttcattgttgattcaaaagaggatggaagttcaggagatgggaaagagagtgaggttttgcacttgggaaagccagatgatgtgaacgtgtccatagaattgaaaaattggttatttgctcttgaaggcgcacaggaaatggcagtgtttagaagttcctccaatcaggagggtgatagcagagaagagaggtcttggcacacaacattccacaatctgcacctaaaaggaaaaagccgtccaaaacaagtgatgaatggcattagaaagtcatactggacgccaaaatatcctttagaattggtgacggttggtgtggaaggcttgcagatattgaagccacatgcccataactatcataatcctgctatcttacatgtgaatgggaccaaggaatctgcaggtgtaaatctggaacttcgcctggtgacaatggaggacagtgttgatcatgaaatggtggaatgggtagtagaaaatgtgaaattttctgttgagcaaccgattgaggcagttgtatctaaggatgagctgcaacatcttgttttattgtgcaagtcggaagttgactcaatgggtcgaataacagctggaattctgcggctatttaagttggaggagaccataggccaggctgctatggatcaactgaccaaccttggtatttactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chorein_N

Protein Analysis

1017

Amino Acids

111.82

Weight (kDa)

5.34

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BLTP3A_B PF24917 33 - 205 8.6e-12 Bridge-like lipid transfer protein family member 3A/B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1895
AarI CACCTGC 1 cut(s) 2774
Acc36I ACCTGC 2 cut(s) 511, 2774
AccI GTMKAC 1 cut(s) 32
AccII CGCG 1 cut(s) 544
AciI CCGC 6 cut(s) 152, 544, 868, 931, 2247, 2983
AclWI GGATC 2 cut(s) 1671, 3033
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 7 cut(s) 280, 738, 1007, 2338, 2364, 2867, 2976
AcuI CTGAAG 4 cut(s) 960, 1277, 1451, 1799
AcvI CACGTG 1 cut(s) 166
AcyI GRCGYC 1 cut(s) 2663
AfaI GTAC 4 cut(s) 44, 1450, 1676, 1738
AfeI AGCGCT 2 cut(s) 24, 725
AfiI CCNNNNNNNGG 5 cut(s) 445, 1202, 1583, 1586, 2315
AflII CTTAAG 1 cut(s) 533
AflIII ACRYGT 4 cut(s) 1445, 2164, 2469, 2758
AjnI CCWGG 5 cut(s) 847, 1582, 2308, 2805, 3012
AjuI GAANNNNNNNTTGG 4 cut(s) 272, 304, 551, 583
AleI CACNNNNGTG 1 cut(s) 1148
AloI GAACNNNNNNTCC 4 cut(s) 78, 110, 1733, 1765
Alw21I GWGCWC 4 cut(s) 204, 662, 862, 1243
Alw26I GTCTC 4 cut(s) 60, 1380, 1440, 2996
AlwI GGATC 2 cut(s) 1671, 3033
AlwNI CAGNNNCTG 1 cut(s) 1931
Ama87I CYCGRG 1 cut(s) 791
Aor51HI AGCGCT 2 cut(s) 24, 725
AoxI GGCC 4 cut(s) 174, 949, 2350, 3010
ApeKI GCWGC 7 cut(s) 160, 449, 928, 944, 2272, 2914, 3017
ApoI RAATTY 7 cut(s) 280, 738, 1007, 2338, 2364, 2867, 2976
ArsI GACNNNNNNTTYG 2 cut(s) 2070, 2102
AseI ATTAAT 1 cut(s) 1344
AspA2I CCTAGG 1 cut(s) 2239
AspLEI GCGC 5 cut(s) 25, 160, 544, 726, 2513
AspS9I GGNCC 4 cut(s) 1485, 2306, 2351, 2769
AsuC2I CCSGG 1 cut(s) 337
AsuHPI GGTGA 6 cut(s) 617, 1816, 2370, 2567, 2698, 2821
AsuNHI GCTAGC 1 cut(s) 1606
AvaI CYCGRG 1 cut(s) 791
AvaII GGWCC 3 cut(s) 1485, 2306, 2769
AvrII CCTAGG 1 cut(s) 2239
AxyI CCTNAGG 1 cut(s) 1489
BaeI ACNNNNGTAYC 2 cut(s) 1776, 1809
BanII GRGCYC 3 cut(s) 1110, 1243, 1562
BbrPI CACGTG 1 cut(s) 166
Bbv12I GWGCWC 4 cut(s) 204, 662, 862, 1243
BbvI GCAGC 7 cut(s) 147, 461, 940, 956, 2259, 2901, 3004
BceAI ACGGC 4 cut(s) 136, 189, 936, 2604
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BciT130I CCWGG 5 cut(s) 849, 1584, 2310, 2807, 3014
BciVI GTATCC 2 cut(s) 1114, 2076
BclI TGATCA 1 cut(s) 2830
BcnI CCSGG 1 cut(s) 337
BcoDI GTCTC 4 cut(s) 60, 1380, 1440, 2996
BfaI CTAG 6 cut(s) 309, 330, 1607, 1722, 1865, 2240
BfmI CTRYAG 2 cut(s) 387, 2781
BfoI RGCGCY 3 cut(s) 26, 161, 727
BfrI CTTAAG 1 cut(s) 533
BfuAI ACCTGC 2 cut(s) 511, 2774
BfuI GTATCC 2 cut(s) 1114, 2076
BglI GCCNNNNNGGC 1 cut(s) 2244
BisI GCNGC 8 cut(s) 161, 450, 929, 945, 2273, 2915, 2984, 3018
BlnI CCTAGG 1 cut(s) 2239
BlpI GCTNAGC 1 cut(s) 1242
BlsI GCNGC 8 cut(s) 162, 451, 930, 946, 2274, 2916, 2985, 3019
BmcAI AGTACT 1 cut(s) 44
Bme1390I CCNGG 6 cut(s) 337, 849, 1584, 2310, 2807, 3014
Bme18I GGWCC 3 cut(s) 1485, 2306, 2769
BmeT110I CYCGRG 1 cut(s) 791
BmgT120I GGNCC 4 cut(s) 1485, 2306, 2351, 2769
BmiI GGNNCC 7 cut(s) 234, 676, 1486, 1559, 1776, 2353, 2770
BmrFI CCNGG 6 cut(s) 337, 849, 1584, 2310, 2807, 3014
BmtI GCTAGC 1 cut(s) 1610
BpmI CTGGAG 4 cut(s) 46, 47, 121, 1302
Bpu1102I GCTNAGC 1 cut(s) 1242
BpuEI CTTGAG 4 cut(s) 23, 611, 818, 2312
BpuMI CCSGG 1 cut(s) 337
Bsa29I ATCGAT 2 cut(s) 612, 2140
BsaAI YACGTR 2 cut(s) 166, 857
BsaHI GRCGYC 1 cut(s) 2663
BsaI GGTCTC 2 cut(s) 60, 2996
BsaJI CCNNGG 6 cut(s) 171, 439, 2239, 2309, 2772, 3040
Bsc4I CCNNNNNNNGG 5 cut(s) 445, 1202, 1583, 1586, 2315
Bse118I RCCGGY 1 cut(s) 154
Bse1I ACTGG 5 cut(s) 50, 70, 883, 1374, 2663
Bse21I CCTNAGG 1 cut(s) 1489
Bse3DI GCAATG 1 cut(s) 226
BseBI CCWGG 5 cut(s) 849, 1584, 2310, 2807, 3014
BseCI ATCGAT 2 cut(s) 612, 2140
BseDI CCNNGG 6 cut(s) 171, 439, 2239, 2309, 2772, 3040
BseGI GGATG 7 cut(s) 298, 323, 649, 1171, 1747, 2410, 2914
BseLI CCNNNNNNNGG 5 cut(s) 445, 1202, 1583, 1586, 2315
BseMI GCAATG 1 cut(s) 226
BseMII CTCAG 4 cut(s) 938, 1256, 1503, 1992
BseNI ACTGG 5 cut(s) 50, 70, 883, 1374, 2663
BseRI GAGGAG 5 cut(s) 290, 453, 918, 1569, 3014
BseXI GCAGC 7 cut(s) 147, 461, 940, 956, 2259, 2901, 3004
BsgI GTGCAG 4 cut(s) 146, 266, 1944, 2585
Bsh1236I CGCG 1 cut(s) 544
BshFI GGCC 4 cut(s) 176, 951, 2352, 3012
BshVI ATCGAT 2 cut(s) 612, 2140
BsiHKAI GWGCWC 4 cut(s) 204, 662, 862, 1243
BsiHKCI CYCGRG 1 cut(s) 791
BsiSI CCGG 2 cut(s) 155, 336
BslFI GGGAC 4 cut(s) 99, 1253, 1498, 2782
BslI CCNNNNNNNGG 5 cut(s) 445, 1202, 1583, 1586, 2315
BsmAI GTCTC 4 cut(s) 60, 1380, 1440, 2996
BsmFI GGGAC 4 cut(s) 99, 1253, 1498, 2782
BsmI GAATGC 1 cut(s) 2232
BsnI GGCC 4 cut(s) 176, 951, 2352, 3012
Bso31I GGTCTC 2 cut(s) 60, 2996
BsoBI CYCGRG 1 cut(s) 791
Bsp1286I GDGCHC 6 cut(s) 204, 662, 862, 1110, 1243, 1562
Bsp143I GATC 8 cut(s) 613, 976, 1257, 1663, 1885, 2137, 2830, 3025
Bsp1720I GCTNAGC 1 cut(s) 1242
BspACI CCGC 6 cut(s) 152, 544, 868, 931, 2247, 2983
BspANI GGCC 4 cut(s) 176, 951, 2352, 3012
BspCNI CTCAG 4 cut(s) 937, 1255, 1502, 1993
BspDI ATCGAT 2 cut(s) 612, 2140
BspFNI CGCG 1 cut(s) 544
BspHI TCATGA 1 cut(s) 2833
BspLI GGNNCC 7 cut(s) 234, 676, 1486, 1559, 1776, 2353, 2770
BspMAI CTGCAG 1 cut(s) 2785
BspMI ACCTGC 2 cut(s) 511, 2774
BspOI GCTAGC 1 cut(s) 1610
BspPI GGATC 2 cut(s) 1671, 3033
BspQI GCTCTTC 1 cut(s) 867
BspTI CTTAAG 1 cut(s) 533
BspTNI GGTCTC 2 cut(s) 60, 2996
BsrDI GCAATG 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 154
BsrI ACTGG 5 cut(s) 50, 70, 883, 1374, 2663
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 6 cut(s) 171, 439, 2239, 2309, 2772, 3040
BssMI GATC 8 cut(s) 613, 976, 1257, 1663, 1885, 2137, 2830, 3025
BssNAI GTATAC 1 cut(s) 33
BssNI GRCGYC 1 cut(s) 2663
BssT1I CCWWGG 4 cut(s) 439, 2239, 2772, 3040
Bst1107I GTATAC 1 cut(s) 33
Bst2UI CCWGG 5 cut(s) 849, 1584, 2310, 2807, 3014
Bst6I CTCTTC 4 cut(s) 867, 1043, 1296, 2562
BstACI GRCGYC 1 cut(s) 2663
BstAFI CTTAAG 1 cut(s) 533
BstBAI YACGTR 2 cut(s) 166, 857
BstC8I GCNNGC 8 cut(s) 156, 658, 705, 949, 1525, 1608, 2350, 2708
BstDEI CTNAG 8 cut(s) 924, 1089, 1147, 1242, 1489, 2001, 2075, 2904
BstDSI CCRYGG 1 cut(s) 171
BstF5I GGATG 7 cut(s) 298, 323, 649, 1171, 1747, 2410, 2914
BstFNI CGCG 1 cut(s) 544
BstH2I RGCGCY 3 cut(s) 26, 161, 727
BstHHI GCGC 5 cut(s) 25, 160, 544, 726, 2513
BstKTI GATC 8 cut(s) 616, 979, 1260, 1666, 1888, 2140, 2833, 3028
BstMAI GTCTC 4 cut(s) 60, 1380, 1440, 2996
BstMBI GATC 8 cut(s) 613, 976, 1257, 1663, 1885, 2137, 2830, 3025
BstMWI GCNNNNNNNGC 5 cut(s) 160, 455, 653, 704, 2244
BstNI CCWGG 5 cut(s) 849, 1584, 2310, 2807, 3014
BstNSI RCATGY 5 cut(s) 1193, 1850, 2168, 2729, 2762
BstSCI CCNGG 6 cut(s) 335, 847, 1582, 2308, 2805, 3012
BstSFI CTRYAG 2 cut(s) 387, 2781
BstUI CGCG 1 cut(s) 544
BstV1I GCAGC 7 cut(s) 147, 461, 940, 956, 2259, 2901, 3004
BstX2I RGATCY 1 cut(s) 1663
BstYI RGATCY 1 cut(s) 1663
BstZ17I GTATAC 1 cut(s) 33
Bsu15I ATCGAT 2 cut(s) 612, 2140
Bsu36I CCTNAGG 1 cut(s) 1489
BsuI GTATCC 2 cut(s) 1114, 2076
BsuRI GGCC 4 cut(s) 176, 951, 2352, 3012
BsuTUI ATCGAT 2 cut(s) 612, 2140
BtgI CCRYGG 1 cut(s) 171
BtgZI GCGATG 2 cut(s) 138, 2261
BtsCI GGATG 7 cut(s) 298, 323, 649, 1171, 1747, 2410, 2914
BtsI GCAGTG 2 cut(s) 1253, 2532
BtsIMutI CAGTG 5 cut(s) 768, 1253, 1987, 2532, 2830
BveI ACCTGC 2 cut(s) 511, 2774
Cac8I GCNNGC 8 cut(s) 156, 658, 705, 949, 1525, 1608, 2350, 2708
CaiI CAGNNNCTG 1 cut(s) 1931
CciI TCATGA 1 cut(s) 2833
CfoI GCGC 5 cut(s) 25, 160, 544, 726, 2513
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 4 cut(s) 1485, 2306, 2351, 2769
ClaI ATCGAT 2 cut(s) 612, 2140
CseI GACGC 1 cut(s) 2671
Csp6I GTAC 4 cut(s) 43, 1449, 1675, 1737
CviQI GTAC 4 cut(s) 43, 1449, 1675, 1737
DdeI CTNAG 8 cut(s) 924, 1089, 1147, 1242, 1489, 2001, 2075, 2904
DpnI GATC 8 cut(s) 615, 978, 1259, 1665, 1887, 2139, 2832, 3027
DpnII GATC 8 cut(s) 613, 976, 1257, 1663, 1885, 2137, 2830, 3025
DraI TTTAAA 1 cut(s) 2178
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 4 cut(s) 867, 1043, 1296, 2562
EarI CTCTTC 4 cut(s) 867, 1043, 1296, 2562
EciI GGCGGA 1 cut(s) 2262
Ecl136II GAGCTC 1 cut(s) 1241
Eco130I CCWWGG 4 cut(s) 439, 2239, 2772, 3040
Eco24I GRGCYC 3 cut(s) 1110, 1243, 1562
Eco31I GGTCTC 2 cut(s) 60, 2996
Eco47I GGWCC 3 cut(s) 1485, 2306, 2769
Eco47III AGCGCT 2 cut(s) 24, 725
Eco53kI GAGCTC 1 cut(s) 1241
Eco57I CTGAAG 4 cut(s) 960, 1277, 1451, 1799
Eco72I CACGTG 1 cut(s) 166
Eco81I CCTNAGG 1 cut(s) 1489
Eco88I CYCGRG 1 cut(s) 791
EcoICRI GAGCTC 1 cut(s) 1241
EcoO109I RGGNCCY 2 cut(s) 1485, 2351
EcoRI GAATTC 3 cut(s) 280, 1007, 2976
EcoRII CCWGG 5 cut(s) 847, 1582, 2308, 2805, 3012
EcoT14I CCWWGG 4 cut(s) 439, 2239, 2772, 3040
EcoT22I ATGCAT 2 cut(s) 1365, 1848
EcoT38I GRGCYC 3 cut(s) 1110, 1243, 1562
ErhI CCWWGG 4 cut(s) 439, 2239, 2772, 3040
FalI AAGNNNNNCTT 2 cut(s) 1123, 1155
FaqI GGGAC 4 cut(s) 99, 1253, 1498, 2782
FauI CCCGC 1 cut(s) 537
FbaI TGATCA 1 cut(s) 2830
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 8 cut(s) 161, 450, 929, 945, 2273, 2915, 2984, 3018
FokI GGATG 7 cut(s) 305, 310, 656, 1178, 1754, 2417, 2921
FriOI GRGCYC 3 cut(s) 1110, 1243, 1562
Fsp4HI GCNGC 8 cut(s) 161, 450, 929, 945, 2273, 2915, 2984, 3018
FspBI CTAG 6 cut(s) 309, 330, 1607, 1722, 1865, 2240
GlaI GCGC 5 cut(s) 24, 159, 543, 725, 2512
GluI GCNGC 8 cut(s) 161, 450, 929, 945, 2273, 2915, 2984, 3018
GsuI CTGGAG 4 cut(s) 46, 47, 121, 1302
HaeII RGCGCY 3 cut(s) 26, 161, 727
HaeIII GGCC 4 cut(s) 176, 951, 2352, 3012
HapII CCGG 2 cut(s) 155, 336
HgaI GACGC 1 cut(s) 2671
HhaI GCGC 5 cut(s) 25, 160, 544, 726, 2513
Hin1I GRCGYC 1 cut(s) 2663
Hin6I GCGC 5 cut(s) 23, 158, 542, 724, 2511
HinP1I GCGC 5 cut(s) 23, 158, 542, 724, 2511
HincII GTYRAC 3 cut(s) 936, 1375, 2950
HindII GTYRAC 3 cut(s) 936, 1375, 2950
HindIII AAGCTT 2 cut(s) 750, 1013
HinfI GANTC 9 cut(s) 180, 394, 599, 914, 1832, 2264, 2393, 2777, 2951
HpaII CCGG 2 cut(s) 155, 336
HphI GGTGA 6 cut(s) 617, 1816, 2370, 2567, 2698, 2821
Hpy188I TCNGA 8 cut(s) 286, 897, 1063, 1177, 1296, 1470, 2002, 2944
Hpy99I CGWCG 1 cut(s) 1181
HpyAV CCTTC 9 cut(s) 20, 67, 728, 1292, 1388, 1847, 2308, 2501, 2696
HpyCH4IV ACGT 7 cut(s) 165, 856, 1445, 1748, 1948, 2157, 2469
HpyF10VI GCNNNNNNNGC 5 cut(s) 160, 455, 653, 704, 2244
HpyF3I CTNAG 8 cut(s) 924, 1089, 1147, 1242, 1489, 2001, 2075, 2904
HpySE526I ACGT 7 cut(s) 165, 856, 1445, 1748, 1948, 2157, 2469
Hsp92I GRCGYC 1 cut(s) 2663
HspAI GCGC 5 cut(s) 23, 158, 542, 724, 2511
KroI GCCGGC 1 cut(s) 154
KroNI GCCGGC 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 2830
Kzo9I GATC 8 cut(s) 613, 976, 1257, 1663, 1885, 2137, 2830, 3025
LguI GCTCTTC 1 cut(s) 867
LmnI GCTCC 5 cut(s) 207, 338, 721, 1238, 1557
Lsp1109I GCAGC 7 cut(s) 147, 461, 940, 956, 2259, 2901, 3004
MaeI CTAG 6 cut(s) 309, 330, 1607, 1722, 1865, 2240
MaeII ACGT 7 cut(s) 165, 856, 1445, 1748, 1948, 2157, 2469
MaeIII GTNAC 8 cut(s) 166, 807, 1032, 1543, 1900, 2198, 2686, 2809
MalI GATC 8 cut(s) 615, 978, 1259, 1665, 1887, 2139, 2832, 3027
MboI GATC 8 cut(s) 613, 976, 1257, 1663, 1885, 2137, 2830, 3025
MboII GAAGA 8 cut(s) 401, 854, 1030, 1283, 1411, 1805, 1830, 2579
MfeI CAATTG 1 cut(s) 966
MflI RGATCY 1 cut(s) 1663
MhlI GDGCHC 6 cut(s) 204, 662, 862, 1110, 1243, 1562
MlyI GAGTC 2 cut(s) 189, 2945
MmeI TCCRAC 6 cut(s) 270, 1200, 1690, 2313, 2922, 2976
Mph1103I ATGCAT 2 cut(s) 1365, 1848
MreI CGCCGGCG 1 cut(s) 154
MroNI GCCGGC 1 cut(s) 154
MslI CAYNNNNRTG 3 cut(s) 1148, 2156, 2763
MspA1I CMGCKG 3 cut(s) 931, 1460, 2972
MspCI CTTAAG 1 cut(s) 533
MspI CCGG 2 cut(s) 155, 336
MspR9I CCNGG 6 cut(s) 337, 849, 1584, 2310, 2807, 3014
MunI CAATTG 1 cut(s) 966
Mva1269I GAATGC 1 cut(s) 2232
MvaI CCWGG 5 cut(s) 849, 1584, 2310, 2807, 3014
MvnI CGCG 1 cut(s) 544
MwoI GCNNNNNNNGC 5 cut(s) 160, 455, 653, 704, 2244
NaeI GCCGGC 1 cut(s) 156
NciI CCSGG 1 cut(s) 337
NdeII GATC 8 cut(s) 613, 976, 1257, 1663, 1885, 2137, 2830, 3025
NgoMIV GCCGGC 1 cut(s) 154
NheI GCTAGC 1 cut(s) 1606
NlaIV GGNNCC 7 cut(s) 234, 676, 1486, 1559, 1776, 2353, 2770
NmuCI GTSAC 5 cut(s) 166, 1032, 2198, 2686, 2809
NsiI ATGCAT 2 cut(s) 1365, 1848
NspI RCATGY 5 cut(s) 1193, 1850, 2168, 2729, 2762
OliI CACNNNNGTG 1 cut(s) 1148
PagI TCATGA 1 cut(s) 2833
PaqCI CACCTGC 1 cut(s) 2774
PciI ACATGT 2 cut(s) 2164, 2758
PciSI GCTCTTC 1 cut(s) 867
PcsI WCGNNNNNNNCGW 1 cut(s) 1745
PctI GAATGC 1 cut(s) 2232
PdiI GCCGGC 1 cut(s) 156
PfeI GAWTC 7 cut(s) 394, 599, 914, 1832, 2264, 2393, 2777
PfoI TCCNGGA 1 cut(s) 335
PkrI GCNGC 8 cut(s) 162, 451, 930, 946, 2274, 2916, 2985, 3019
PleI GAGTC 2 cut(s) 188, 2945
PmaCI CACGTG 1 cut(s) 166
PmlI CACGTG 1 cut(s) 166
PpsI GAGTC 2 cut(s) 188, 2945
Ppu21I YACGTR 2 cut(s) 166, 857
PpuMI RGGWCCY 1 cut(s) 1485
PscI ACATGT 2 cut(s) 2164, 2758
PshBI ATTAAT 1 cut(s) 1344
PsiI TTATAA 1 cut(s) 1895
Psp124BI GAGCTC 1 cut(s) 1243
Psp5II RGGWCCY 1 cut(s) 1485
Psp6I CCWGG 5 cut(s) 847, 1582, 2308, 2805, 3012
PspCI CACGTG 1 cut(s) 166
PspGI CCWGG 5 cut(s) 847, 1582, 2308, 2805, 3012
PspN4I GGNNCC 7 cut(s) 234, 676, 1486, 1559, 1776, 2353, 2770
PspPI GGNCC 4 cut(s) 1485, 2306, 2351, 2769
PspPPI RGGWCCY 1 cut(s) 1485
PsrI GAACNNNNNNTAC 2 cut(s) 837, 869
PstI CTGCAG 1 cut(s) 2785
PstNI CAGNNNCTG 1 cut(s) 1931
PsuI RGATCY 1 cut(s) 1663
PvuII CAGCTG 2 cut(s) 1460, 2972
RsaI GTAC 4 cut(s) 44, 1450, 1676, 1738
RsaNI GTAC 4 cut(s) 43, 1449, 1675, 1737
RseI CAYNNNNRTG 3 cut(s) 1148, 2156, 2763
SacI GAGCTC 1 cut(s) 1243
SapI GCTCTTC 1 cut(s) 867
SatI GCNGC 8 cut(s) 161, 450, 929, 945, 2273, 2915, 2984, 3018
Sau3AI GATC 8 cut(s) 613, 976, 1257, 1663, 1885, 2137, 2830, 3025
Sau96I GGNCC 4 cut(s) 1485, 2306, 2351, 2769
ScaI AGTACT 1 cut(s) 44
SchI GAGTC 2 cut(s) 189, 2945
ScrFI CCNGG 6 cut(s) 337, 849, 1584, 2310, 2807, 3014
SduI GDGCHC 6 cut(s) 204, 662, 862, 1110, 1243, 1562
SfcI CTRYAG 2 cut(s) 387, 2781
SgrAI CRCCGGYG 1 cut(s) 154
SinI GGWCC 3 cut(s) 1485, 2306, 2769
SmiMI CAYNNNNRTG 3 cut(s) 1148, 2156, 2763
SmlI CTYRAG 5 cut(s) 38, 533, 590, 797, 2291
SmoI CTYRAG 5 cut(s) 38, 533, 590, 797, 2291
SsiI CCGC 6 cut(s) 152, 544, 868, 931, 2247, 2983
SspMI CTAG 6 cut(s) 309, 330, 1607, 1722, 1865, 2240
SstI GAGCTC 1 cut(s) 1243
StyD4I CCNGG 6 cut(s) 335, 847, 1582, 2308, 2805, 3012
StyI CCWWGG 4 cut(s) 439, 2239, 2772, 3040
TaiI ACGT 7 cut(s) 168, 859, 1448, 1751, 1951, 2160, 2472
TaqI TCGA 5 cut(s) 19, 612, 1440, 2140, 2962
TatI WGTACW 2 cut(s) 42, 1448
TauI GCSGC 1 cut(s) 2986
TfiI GAWTC 7 cut(s) 394, 599, 914, 1832, 2264, 2393, 2777
TscAI CASTG 5 cut(s) 768, 1253, 1987, 2532, 2830
TseFI GTSAC 5 cut(s) 166, 1032, 2198, 2686, 2809
TseI GCWGC 7 cut(s) 160, 449, 928, 944, 2272, 2914, 3017
Tsp45I GTSAC 5 cut(s) 166, 1032, 2198, 2686, 2809
TspDTI ATGAA 9 cut(s) 525, 559, 1274, 2103, 2196, 2267, 2374, 2651, 2850
TspGWI ACGGA 4 cut(s) 103, 656, 1063, 1754
TspRI CASTG 5 cut(s) 768, 1253, 1987, 2532, 2830
Vha464I CTTAAG 1 cut(s) 533
VpaK11BI GGWCC 3 cut(s) 1485, 2306, 2769
VspI ATTAAT 1 cut(s) 1344
XapI RAATTY 7 cut(s) 280, 738, 1007, 2338, 2364, 2867, 2976
XceI RCATGY 5 cut(s) 1193, 1850, 2168, 2729, 2762
XcmI CCANNNNNNNNNTGG 3 cut(s) 112, 1231, 2117
XmaJI CCTAGG 1 cut(s) 2239
XmiI GTMKAC 1 cut(s) 32
XspI CTAG 6 cut(s) 309, 330, 1607, 1722, 1865, 2240
ZrmI AGTACT 1 cut(s) 44
Zsp2I ATGCAT 2 cut(s) 1365, 1848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.