Rmu_sc0005045.1_g000039

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005045.1
OG0009279
Physical Location & Seq
Forward (+)
115588 .. 116691
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1104 bp
ctgttgctcaaattgggccgccatcctctctgcatcactctgggtaacaagattggctgtccaaatgagtctttaaagactgctgggaatggaagaaatcatcgacaaacagtcaagtttcaaggccggatcactgatgaggaagattctgatcagtttggaacagcaaaagaaactcaaaaggatgagaatgctgatcttgatggtaagcccctcttgcccttgggtttgaaaccacaaaggccaaagcgaaagaggaagttaccgttgactgtgcagaatgtccaagaaacatgttttccttctacagaaatgagttcaaatacgacgtttatttcaaaagctcaaaaggaacaaaaatccaaagtaattgatgactatactaggttaaatcagttttttggttcgaagcagtgtgaaaaatcagaccatcttgaacaatatgaagacaaagaacatgccacctctcttggtaacggtaaaacttcagcttcacagttgcaaaagaagaggaaaaggactccaagtttccattttactgcagacactgaagaatgcactggatatctaggctcgaaagatttacacaaggatgtgcaaaagaagaggaaagtgacgtcaactttgacacctcctgcagaggttaaaggtttgtcctttttgggattgcaagattcacacacagacgcaactaatggttctattgaggaagatctcaagcatccagaaaaggaagatccaaatattgtagaggcttcaaagtcacaaaagcagaggaaaatgacttcagctttcccacttcctgcagaaagtaaagatttgcctttaggtttgggcttgcaagatttacacaaagacagggacacaactaatggttggactgaggaagatcctctgatcgtaaagtcctattctggagatgattctcaagctaggaatttggttccgtatgcaattccaactcctattccaagtctgaaattgaaggaaatgacagtaggtcaactgaaggaattggcaaagaggctcaaagtgaaaggcttttccaagcttaagaaaatggagctggttgagctactagccaggaaacagagaggtcactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rho_N

Protein Analysis

367

Amino Acids

41.15

Weight (kDa)

9.26

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rho_N PF07498 328 - 360 3e-06 Rho termination factor, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 620
AciI CCGC 1 cut(s) 19
AclWI GGATC 3 cut(s) 137, 731, 884
AcsI RAATTY 1 cut(s) 937
AcuI CTGAAG 4 cut(s) 471, 570, 771, 1028
AcyI GRCGYC 1 cut(s) 617
AflII CTTAAG 1 cut(s) 1052
AflIII ACRYGT 1 cut(s) 293
AgsI TTSAA 7 cut(s) 122, 232, 321, 339, 437, 759, 985
AhdI GACNNNNNGTC 2 cut(s) 110, 999
AjnI CCWGG 1 cut(s) 1082
AluBI AGCT 7 cut(s) 344, 491, 791, 932, 1051, 1066, 1075
AluI AGCT 7 cut(s) 344, 491, 791, 932, 1051, 1066, 1075
AlwI GGATC 3 cut(s) 137, 731, 884
AlwNI CAGNNNCTG 1 cut(s) 548
AoxI GGCC 3 cut(s) 16, 124, 242
ApoI RAATTY 1 cut(s) 937
ArsI GACNNNNNNTTYG 2 cut(s) 607, 639
AspS9I GGNCC 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 407
BbsI GAAGAC 1 cut(s) 453
BccI CCATC 3 cut(s) 30, 197, 438
BciT130I CCWGG 1 cut(s) 1084
BclI TGATCA 1 cut(s) 151
BfaI CTAG 5 cut(s) 384, 569, 933, 1079, 1102
BfmI CTRYAG 4 cut(s) 306, 540, 636, 804
BfrI CTTAAG 1 cut(s) 1052
BglII AGATCT 1 cut(s) 712
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 1084
BmeRI GACNNNNNGTC 2 cut(s) 110, 999
BmgT120I GGNCC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 945
BmrFI CCNGG 1 cut(s) 1084
BmsI GCATC 2 cut(s) 42, 730
BpiI GAAGAC 1 cut(s) 453
BpmI CTGGAG 1 cut(s) 936
Bpu14I TTCGAA 1 cut(s) 407
BpuEI CTTGAG 2 cut(s) 701, 912
BsaBI GATNNNNATC 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 617
BsaJI CCNNGG 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 565
Bse8I GATNNNNATC 1 cut(s) 150
BseBI CCWGG 1 cut(s) 1084
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 4 cut(s) 22, 190, 598, 721
BseJI GATNNNNATC 1 cut(s) 150
BseMII CTCAG 1 cut(s) 873
BseNI ACTGG 1 cut(s) 565
BseYI CCCAGC 1 cut(s) 83
BsgI GTGCAG 1 cut(s) 296
BshFI GGCC 3 cut(s) 18, 126, 244
BsiSI CCGG 1 cut(s) 127
BslFI GGGAC 1 cut(s) 875
BsmFI GGGAC 1 cut(s) 875
BsmI GAATGC 2 cut(s) 196, 560
BsnI GGCC 3 cut(s) 18, 126, 244
Bsp119I TTCGAA 1 cut(s) 407
Bsp143I GATC 7 cut(s) 129, 151, 196, 712, 736, 889, 897
BspACI CCGC 1 cut(s) 19
BspANI GGCC 3 cut(s) 18, 126, 244
BspCNI CTCAG 1 cut(s) 874
BspLI GGNNCC 1 cut(s) 945
BspMAI CTGCAG 3 cut(s) 544, 640, 808
BspPI GGATC 3 cut(s) 137, 731, 884
BspT104I TTCGAA 1 cut(s) 407
BspTI CTTAAG 1 cut(s) 1052
BsrI ACTGG 1 cut(s) 565
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 7 cut(s) 129, 151, 196, 712, 736, 889, 897
BssNI GRCGYC 1 cut(s) 617
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 1084
Bst4CI ACNGT 6 cut(s) 112, 267, 274, 479, 498, 997
Bst6I CTCTTC 2 cut(s) 503, 599
BstACI GRCGYC 1 cut(s) 617
BstAFI CTTAAG 1 cut(s) 1052
BstBI TTCGAA 1 cut(s) 407
BstC8I GCNNGC 1 cut(s) 839
BstDEI CTNAG 1 cut(s) 882
BstF5I GGATG 4 cut(s) 22, 190, 598, 721
BstKTI GATC 7 cut(s) 132, 154, 199, 715, 739, 892, 900
BstMBI GATC 7 cut(s) 129, 151, 196, 712, 736, 889, 897
BstMWI GCNNNNNNNGC 2 cut(s) 217, 1072
BstNI CCWGG 1 cut(s) 1084
BstNSI RCATGY 2 cut(s) 297, 461
BstSCI CCNGG 1 cut(s) 1082
BstSFI CTRYAG 4 cut(s) 306, 540, 636, 804
BstV2I GAAGAC 1 cut(s) 453
BstX2I RGATCY 3 cut(s) 712, 736, 889
BstYI RGATCY 3 cut(s) 712, 736, 889
BsuRI GGCC 3 cut(s) 18, 126, 244
BtsCI GGATG 4 cut(s) 22, 190, 598, 721
BtsI GCAGTG 1 cut(s) 419
BtsIMutI CAGTG 4 cut(s) 132, 419, 546, 558
Cac8I GCNNGC 1 cut(s) 839
CaiI CAGNNNCTG 1 cut(s) 548
Cfr13I GGNCC 1 cut(s) 16
CseI GACGC 1 cut(s) 695
CspCI CAANNNNNGTGG 2 cut(s) 451, 486
CviAII CATG 2 cut(s) 294, 458
DdeI CTNAG 1 cut(s) 882
DpnI GATC 7 cut(s) 131, 153, 198, 714, 738, 891, 899
DpnII GATC 7 cut(s) 129, 151, 196, 712, 736, 889, 897
DraI TTTAAA 1 cut(s) 75
DriI GACNNNNNGTC 2 cut(s) 110, 999
Eam1104I CTCTTC 2 cut(s) 503, 599
Eam1105I GACNNNNNGTC 2 cut(s) 110, 999
EarI CTCTTC 2 cut(s) 503, 599
Eco130I CCWWGG 1 cut(s) 222
Eco32I GATATC 1 cut(s) 566
Eco57I CTGAAG 4 cut(s) 471, 570, 771, 1028
EcoRII CCWGG 1 cut(s) 1082
EcoRV GATATC 1 cut(s) 566
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 2 cut(s) 297, 461
FaiI YATR 5 cut(s) 295, 381, 444, 459, 951
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FaqI GGGAC 1 cut(s) 875
FatI CATG 2 cut(s) 293, 457
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 19
FokI GGATG 4 cut(s) 9, 197, 605, 708
Fsp4HI GCNGC 1 cut(s) 19
FspBI CTAG 5 cut(s) 384, 569, 933, 1079, 1102
GluI GCNGC 1 cut(s) 19
GsaI CCCAGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 936
HaeIII GGCC 3 cut(s) 18, 126, 244
HapII CCGG 1 cut(s) 127
HgaI GACGC 1 cut(s) 695
Hin1I GRCGYC 1 cut(s) 617
Hin1II CATG 2 cut(s) 297, 461
HincII GTYRAC 3 cut(s) 270, 621, 1004
HindII GTYRAC 3 cut(s) 270, 621, 1004
HindIII AAGCTT 1 cut(s) 1049
HinfI GANTC 5 cut(s) 68, 146, 520, 674, 923
HpaII CCGG 1 cut(s) 127
Hpy166II GTNNAC 3 cut(s) 270, 621, 1004
Hpy188I TCNGA 4 cut(s) 151, 427, 897, 978
Hpy188III TCNNGA 4 cut(s) 200, 434, 725, 915
Hpy8I GTNNAC 3 cut(s) 270, 621, 1004
Hpy99I CGWCG 1 cut(s) 331
HpyAV CCTTC 3 cut(s) 312, 979, 1003
HpyCH4III ACNGT 6 cut(s) 112, 267, 274, 479, 498, 997
HpyCH4IV ACGT 2 cut(s) 329, 617
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 1072
HpyF3I CTNAG 1 cut(s) 882
HpySE526I ACGT 2 cut(s) 329, 617
Hsp92I GRCGYC 1 cut(s) 617
Hsp92II CATG 2 cut(s) 297, 461
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 7 cut(s) 129, 151, 196, 712, 736, 889, 897
LmnI GCTCC 1 cut(s) 1063
LweI GCATC 2 cut(s) 42, 730
MaeI CTAG 5 cut(s) 384, 569, 933, 1079, 1102
MaeII ACGT 2 cut(s) 329, 617
MaeIII GTNAC 6 cut(s) 44, 261, 473, 613, 762, 1097
MalI GATC 7 cut(s) 131, 153, 198, 714, 738, 891, 899
MboI GATC 7 cut(s) 129, 151, 196, 712, 736, 889, 897
MboII GAAGA 9 cut(s) 105, 155, 458, 520, 563, 616, 722, 746, 899
MflI RGATCY 3 cut(s) 712, 736, 889
MluCI AATT 6 cut(s) 11, 369, 937, 954, 980, 1013
MlyI GAGTC 2 cut(s) 77, 514
MmeI TCCRAC 2 cut(s) 857, 983
MseI TTAA 4 cut(s) 74, 389, 645, 1053
MslI CAYNNNNRTG 1 cut(s) 591
MspCI CTTAAG 1 cut(s) 1052
MspI CCGG 1 cut(s) 127
MspR9I CCNGG 1 cut(s) 1084
Mva1269I GAATGC 2 cut(s) 196, 560
MvaI CCWGG 1 cut(s) 1084
MwoI GCNNNNNNNGC 2 cut(s) 217, 1072
NdeII GATC 7 cut(s) 129, 151, 196, 712, 736, 889, 897
NlaIII CATG 2 cut(s) 297, 461
NlaIV GGNNCC 1 cut(s) 945
NmuCI GTSAC 3 cut(s) 613, 762, 1097
NspI RCATGY 2 cut(s) 297, 461
NspV TTCGAA 1 cut(s) 407
PciI ACATGT 1 cut(s) 293
PctI GAATGC 2 cut(s) 196, 560
PfeI GAWTC 3 cut(s) 146, 674, 923
PkrI GCNGC 1 cut(s) 20
PleI GAGTC 2 cut(s) 76, 514
PpsI GAGTC 2 cut(s) 76, 514
PscI ACATGT 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 1082
PspFI CCCAGC 1 cut(s) 83
PspGI CCWGG 1 cut(s) 1082
PspN4I GGNNCC 1 cut(s) 945
PspPI GGNCC 1 cut(s) 16
PstI CTGCAG 3 cut(s) 544, 640, 808
PstNI CAGNNNCTG 1 cut(s) 548
PsuI RGATCY 3 cut(s) 712, 736, 889
RseI CAYNNNNRTG 1 cut(s) 591
SaqAI TTAA 4 cut(s) 74, 389, 645, 1053
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 7 cut(s) 129, 151, 196, 712, 736, 889, 897
Sau96I GGNCC 1 cut(s) 16
SchI GAGTC 2 cut(s) 77, 514
ScrFI CCNGG 1 cut(s) 1084
SfaNI GCATC 2 cut(s) 42, 730
SfcI CTRYAG 4 cut(s) 306, 540, 636, 804
SfuI TTCGAA 1 cut(s) 407
SmiMI CAYNNNNRTG 1 cut(s) 591
SmlI CTYRAG 3 cut(s) 716, 927, 1052
SmoI CTYRAG 3 cut(s) 716, 927, 1052
Sse9I AATT 6 cut(s) 11, 369, 937, 954, 980, 1013
SsiI CCGC 1 cut(s) 19
SspI AATATT 1 cut(s) 745
SspMI CTAG 5 cut(s) 384, 569, 933, 1079, 1102
StyD4I CCNGG 1 cut(s) 1082
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 6 cut(s) 112, 267, 274, 479, 498, 997
TaiI ACGT 2 cut(s) 332, 620
TaqI TCGA 3 cut(s) 103, 407, 575
TasI AATT 6 cut(s) 11, 369, 937, 954, 980, 1013
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 3 cut(s) 146, 674, 923
Tru1I TTAA 4 cut(s) 74, 389, 645, 1053
Tru9I TTAA 4 cut(s) 74, 389, 645, 1053
TscAI CASTG 4 cut(s) 139, 419, 553, 565
TseFI GTSAC 3 cut(s) 613, 762, 1097
Tsp45I GTSAC 3 cut(s) 613, 762, 1097
TspDTI ATGAA 1 cut(s) 459
TspGWI ACGGA 1 cut(s) 936
TspRI CASTG 4 cut(s) 139, 419, 553, 565
Vha464I CTTAAG 1 cut(s) 1052
XapI RAATTY 1 cut(s) 937
XceI RCATGY 2 cut(s) 297, 461
XspI CTAG 5 cut(s) 384, 569, 933, 1079, 1102
ZraI GACGTC 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.