Rmu_sc0005135.1_g000005
ERF Family

Tetratricopeptide repeat (TPR)-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005135.1
OG0012189
Physical Location & Seq
Reverse (-)
8907 .. 11422
2516 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1272 bp
atgatacgcactgcgctatcacgagcagcagccaccgtcgccgcccgcacctccgccaagctccgcccttcccttctggcacggcggagatcgtcccgacacctccacgatgggattaacgccaaccctgttgctcttcagatgatcaactacgccctctctctcgccaggtctcacaaatcagatgaatcgtacggtcaagctcagcttgtgctggaacagtgcctttcatctcagcctggtgaaggccaggaccttgcttctgataattcaagggcaatggtaggaaggcttgatgaagcaatagaaaaactgcaaaaagtcgaagacttgagcagctcttcagttggtgttaggattgccgcgttggaggcgcttgttggactgcacttagagttaaagcaggatcatacctcatcagtgctcgctgataaatgcttagaactgtcggagaaacatgatgaacttggatctggtggttctgagggatatactcgtgctgtagcggtaaaagggcttgttgagcttgtgcatggtaatctgggattatgtaaagatgtagctaaaggtgaacttttcattcgagaagttgagagaaatgttgaggaagttgaagaattcactggtagtactgctttattctttggagagctcttgcatgccagacagagctttgagatggcgaagaaggtataccagaaaattatccaaaatgattccaggaatgaagagttcagtgacccaagtgcattagcagctggtaatatgtcgtcagacaaagttttgttagcggccacatgtgcgttgggacagcttgaggctcattcagggaacttcggtgatgctgaggagatgttaacgagagctttaactaaaacagaggaacattttggctctcatcatcctaaagttggcgttgttttaacctgcatagctctcatgtttcagcgtaaagcagtccaagagcattccagttctatattgatccaagagggactttatagaagggcaatagaattgctgaaagctccagcattggaggctgaaggtgcagaagcaaaggtagatagaagtgatatagtggcccttgcaagaggtgggtatgcagaagtactttgcatccaacagaaccgaaagcatcaaggagaaaaaatgaagaggtgggcagaggctgcatggggaaaccgccggctctcattggcagaagcactagatgtatctacatctttaaaagttccaattatagatgctcgaatcagcaggattctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10

Protein Analysis

423

Amino Acids

46.09

Weight (kDa)

6.3

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_NPHP3 PF24885 266 - 322 6.9e-06 Nephrocystin-3 TPR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02130
fragaria_vesca FvH4_6g13250
malus_domestica MD04G1132700.v1.1 MD12G1145400.v1.1
prunus_persica Prupe.6G259100_v2.0.a1 Prupe.6G259100_v2.0.a1
pyrus_communis pycom04g12060 pycom12g13980
rosa_chinensis RchiOBHm_Chr3g0466081
rosa_laevigata RLG00000024604
rosa_multiflora Rmu_sc0005135.1_g000005 Rmu_sc0007597.1_g000006
rosa_roxburghii Rroxscaffold_6G00414810
rosa_rugosa Rorug03G0079400 Rorug03G0079500
rosa_samantha Rh3BG146600 Rh3CG147500 Rh3DG147600
rosa_wichuraiana Rw3G011850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 935
AccI GTMKAC 1 cut(s) 693
AccII CGCG 1 cut(s) 365
AciI CCGC 9 cut(s) 42, 46, 54, 64, 85, 363, 506, 791, 1186
AclWI GGATC 3 cut(s) 414, 478, 979
AcoI YGGCCR 1 cut(s) 792
AcsI RAATTY 1 cut(s) 617
AcuI CTGAAG 3 cut(s) 122, 327, 1065
AfaI GTAC 3 cut(s) 194, 631, 1113
AfiI CCNNNNNNNGG 2 cut(s) 245, 911
AflIII ACRYGT 1 cut(s) 797
AgsI TTSAA 2 cut(s) 273, 614
AjnI CCWGG 4 cut(s) 167, 238, 249, 719
Alw21I GWGCWC 2 cut(s) 426, 654
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 3 cut(s) 414, 478, 979
AlwNI CAGNNNCTG 1 cut(s) 1172
AoxI GGCC 3 cut(s) 247, 792, 1083
ApeKI GCWGC 5 cut(s) 26, 29, 336, 755, 1172
ApoI RAATTY 1 cut(s) 617
AspLEI GCGC 2 cut(s) 16, 376
AspS9I GGNCC 2 cut(s) 253, 1084
AsuHPI GGTGA 3 cut(s) 254, 581, 851
AvaII GGWCC 1 cut(s) 253
BanII GRGCYC 1 cut(s) 654
BarI GAAGNNNNNNTAC 2 cut(s) 677, 709
BauI CACGAG 2 cut(s) 21, 495
BbsI GAAGAC 1 cut(s) 333
Bbv12I GWGCWC 2 cut(s) 426, 654
BbvCI CCTCAGC 1 cut(s) 846
BbvI GCAGC 5 cut(s) 38, 41, 348, 767, 1159
BccI CCATC 2 cut(s) 104, 673
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 4 cut(s) 169, 240, 251, 721
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 177
BfaI CTAG 1 cut(s) 1211
BfmI CTRYAG 2 cut(s) 501, 1268
BfoI RGCGCY 1 cut(s) 377
BfuAI ACCTGC 1 cut(s) 935
BisI GCNGC 8 cut(s) 27, 30, 42, 337, 363, 756, 792, 1173
BlpI GCTNAGC 1 cut(s) 204
BlsI GCNGC 8 cut(s) 28, 31, 43, 338, 364, 757, 793, 1174
BmcAI AGTACT 2 cut(s) 631, 1113
Bme1390I CCNGG 4 cut(s) 169, 240, 251, 721
Bme18I GGWCC 1 cut(s) 253
BmgT120I GGNCC 2 cut(s) 253, 1084
BmrFI CCNGG 4 cut(s) 169, 240, 251, 721
BmsI GCATC 4 cut(s) 832, 1128, 1147, 1237
BpiI GAAGAC 1 cut(s) 333
BpmI CTGGAG 1 cut(s) 1014
Bpu10I CCTNAGC 1 cut(s) 846
Bpu1102I GCTNAGC 1 cut(s) 204
BpuEI CTTGAG 2 cut(s) 352, 836
BsaI GGTCTC 1 cut(s) 177
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 911
Bse118I RCCGGY 1 cut(s) 1188
Bse1I ACTGG 2 cut(s) 628, 972
Bse3DI GCAATG 1 cut(s) 285
BseBI CCWGG 4 cut(s) 169, 240, 251, 721
BseGI GGATG 2 cut(s) 901, 1119
BseLI CCNNNNNNNGG 2 cut(s) 245, 911
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 4 cut(s) 218, 248, 474, 837
BseNI ACTGG 2 cut(s) 628, 972
BseRI GAGGAG 1 cut(s) 863
BseXI GCAGC 5 cut(s) 38, 41, 348, 767, 1159
BsgI GTGCAG 2 cut(s) 371, 1071
Bsh1236I CGCG 1 cut(s) 365
BshFI GGCC 3 cut(s) 249, 794, 1085
BsiHKAI GWGCWC 2 cut(s) 426, 654
BsiSI CCGG 1 cut(s) 1189
BsiWI CGTACG 1 cut(s) 192
BslFI GGGAC 3 cut(s) 79, 822, 1008
BslI CCNNNNNNNGG 2 cut(s) 245, 911
BsmAI GTCTC 1 cut(s) 177
BsmFI GGGAC 3 cut(s) 79, 822, 1008
BsmI GAATGC 1 cut(s) 967
BsnI GGCC 3 cut(s) 249, 794, 1085
Bso31I GGTCTC 1 cut(s) 177
Bsp1286I GDGCHC 2 cut(s) 426, 654
Bsp143I GATC 5 cut(s) 89, 144, 406, 470, 984
Bsp1720I GCTNAGC 1 cut(s) 204
BspACI CCGC 9 cut(s) 42, 46, 54, 64, 85, 363, 506, 791, 1186
BspANI GGCC 3 cut(s) 249, 794, 1085
BspCNI CTCAG 4 cut(s) 217, 247, 475, 838
BspFNI CGCG 1 cut(s) 365
BspMI ACCTGC 1 cut(s) 935
BspPI GGATC 3 cut(s) 414, 478, 979
BspQI GCTCTTC 2 cut(s) 141, 346
BspTNI GGTCTC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 285
BsrFI RCCGGY 1 cut(s) 1188
BsrI ACTGG 2 cut(s) 628, 972
BssAI RCCGGY 1 cut(s) 1188
BssMI GATC 5 cut(s) 89, 144, 406, 470, 984
BssNAI GTATAC 1 cut(s) 694
BssSI CACGAG 2 cut(s) 21, 495
Bst1107I GTATAC 1 cut(s) 694
Bst2BI CACGAG 2 cut(s) 21, 495
Bst2UI CCWGG 4 cut(s) 169, 240, 251, 721
Bst4CI ACNGT 4 cut(s) 37, 197, 222, 447
Bst6I CTCTTC 4 cut(s) 141, 346, 723, 1151
BstAPI GCANNNNNTGC 1 cut(s) 1172
BstC8I GCNNGC 4 cut(s) 46, 426, 660, 1190
BstDEI CTNAG 6 cut(s) 204, 234, 391, 439, 483, 846
BstENI CCTNNNNNAGG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 901, 1119
BstFNI CGCG 1 cut(s) 365
BstH2I RGCGCY 1 cut(s) 377
BstHHI GCGC 2 cut(s) 16, 376
BstKTI GATC 5 cut(s) 92, 147, 409, 473, 987
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 5 cut(s) 89, 144, 406, 470, 984
BstMWI GCNNNNNNNGC 8 cut(s) 38, 371, 523, 755, 800, 1040, 1049, 1172
BstNI CCWGG 4 cut(s) 169, 240, 251, 721
BstNSI RCATGY 2 cut(s) 662, 801
BstSCI CCNGG 4 cut(s) 167, 238, 249, 719
BstSFI CTRYAG 2 cut(s) 501, 1268
BstUI CGCG 1 cut(s) 365
BstV1I GCAGC 5 cut(s) 38, 41, 348, 767, 1159
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 470
BstYI RGATCY 1 cut(s) 470
BstZ17I GTATAC 1 cut(s) 694
BsuRI GGCC 3 cut(s) 249, 794, 1085
BtsCI GGATG 2 cut(s) 901, 1119
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 5 cut(s) 9, 227, 426, 621, 742
BveI ACCTGC 1 cut(s) 935
Cac8I GCNNGC 4 cut(s) 46, 426, 660, 1190
CaiI CAGNNNCTG 1 cut(s) 1172
CfoI GCGC 2 cut(s) 16, 376
Cfr10I RCCGGY 1 cut(s) 1188
Cfr13I GGNCC 2 cut(s) 253, 1084
Csp6I GTAC 3 cut(s) 193, 630, 1112
CviAII CATG 6 cut(s) 458, 533, 659, 798, 940, 1176
CviQI GTAC 3 cut(s) 193, 630, 1112
DdeI CTNAG 6 cut(s) 204, 234, 391, 439, 483, 846
DpnI GATC 5 cut(s) 91, 146, 408, 472, 986
DpnII GATC 5 cut(s) 89, 144, 406, 470, 984
DraI TTTAAA 1 cut(s) 1230
EaeI YGGCCR 1 cut(s) 792
Eam1104I CTCTTC 4 cut(s) 141, 346, 723, 1151
EarI CTCTTC 4 cut(s) 141, 346, 723, 1151
EciI GGCGGA 3 cut(s) 43, 53, 100
Ecl136II GAGCTC 1 cut(s) 652
Eco24I GRGCYC 1 cut(s) 654
Eco31I GGTCTC 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 253
Eco53kI GAGCTC 1 cut(s) 652
Eco57I CTGAAG 3 cut(s) 122, 327, 1065
EcoICRI GAGCTC 1 cut(s) 652
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoO109I RGGNCCY 1 cut(s) 253
EcoRI GAATTC 1 cut(s) 617
EcoRII CCWGG 4 cut(s) 167, 238, 249, 719
EcoT38I GRGCYC 1 cut(s) 654
FaeI CATG 6 cut(s) 461, 536, 662, 801, 943, 1179
FalI AAGNNNNNCTT 6 cut(s) 192, 224, 558, 590, 981, 1013
FaqI GGGAC 3 cut(s) 79, 822, 1008
FatI CATG 6 cut(s) 457, 532, 658, 797, 939, 1175
FauI CCCGC 1 cut(s) 53
FbaI TGATCA 1 cut(s) 144
FblI GTMKAC 1 cut(s) 693
Fnu4HI GCNGC 8 cut(s) 27, 30, 42, 337, 363, 756, 792, 1173
FokI GGATG 2 cut(s) 888, 1106
FriOI GRGCYC 1 cut(s) 654
Fsp4HI GCNGC 8 cut(s) 27, 30, 42, 337, 363, 756, 792, 1173
FspBI CTAG 1 cut(s) 1211
GlaI GCGC 2 cut(s) 15, 375
GluI GCNGC 8 cut(s) 27, 30, 42, 337, 363, 756, 792, 1173
GsuI CTGGAG 1 cut(s) 1014
HaeII RGCGCY 1 cut(s) 377
HaeIII GGCC 3 cut(s) 249, 794, 1085
HapII CCGG 1 cut(s) 1189
HhaI GCGC 2 cut(s) 16, 376
Hin1II CATG 6 cut(s) 461, 536, 662, 801, 943, 1179
Hin6I GCGC 2 cut(s) 14, 374
HinP1I GCGC 2 cut(s) 14, 374
HincII GTYRAC 1 cut(s) 858
HindII GTYRAC 1 cut(s) 858
HinfI GANTC 4 cut(s) 188, 716, 1254, 1264
HpaI GTTAAC 1 cut(s) 858
HpaII CCGG 1 cut(s) 1189
HphI GGTGA 3 cut(s) 254, 581, 851
Hpy166II GTNNAC 3 cut(s) 572, 694, 858
Hpy188I TCNGA 6 cut(s) 141, 184, 265, 451, 484, 775
Hpy188III TCNNGA 3 cut(s) 21, 96, 584
Hpy8I GTNNAC 3 cut(s) 572, 694, 858
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 7 cut(s) 78, 83, 239, 282, 682, 999, 1040
HpyCH4III ACNGT 4 cut(s) 37, 197, 222, 447
HpyF10VI GCNNNNNNNGC 8 cut(s) 38, 371, 523, 755, 800, 1040, 1049, 1172
HpyF3I CTNAG 6 cut(s) 204, 234, 391, 439, 483, 846
Hsp92II CATG 6 cut(s) 461, 536, 662, 801, 943, 1179
HspAI GCGC 2 cut(s) 14, 374
KroI GCCGGC 1 cut(s) 1188
KroNI GCCGGC 1 cut(s) 1190
Ksp22I TGATCA 1 cut(s) 144
KspAI GTTAAC 1 cut(s) 858
Kzo9I GATC 5 cut(s) 89, 144, 406, 470, 984
LguI GCTCTTC 2 cut(s) 141, 346
LmnI GCTCC 2 cut(s) 66, 1033
Lsp1109I GCAGC 5 cut(s) 38, 41, 348, 767, 1159
LweI GCATC 4 cut(s) 832, 1128, 1147, 1237
MaeI CTAG 1 cut(s) 1211
MaeIII GTNAC 1 cut(s) 737
MalI GATC 5 cut(s) 91, 146, 408, 472, 986
MboI GATC 5 cut(s) 89, 144, 406, 470, 984
MboII GAAGA 7 cut(s) 128, 333, 338, 626, 697, 740, 1168
MflI RGATCY 1 cut(s) 470
MhlI GDGCHC 2 cut(s) 426, 654
MluCI AATT 5 cut(s) 268, 617, 702, 1016, 1239
MmeI TCCRAC 4 cut(s) 348, 361, 429, 1147
MroNI GCCGGC 1 cut(s) 1188
MseI TTAA 6 cut(s) 117, 398, 857, 869, 923, 1229
MspA1I CMGCKG 1 cut(s) 758
MspI CCGG 1 cut(s) 1189
MspR9I CCNGG 4 cut(s) 169, 240, 251, 721
Mva1269I GAATGC 1 cut(s) 967
MvaI CCWGG 4 cut(s) 169, 240, 251, 721
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 8 cut(s) 38, 371, 523, 755, 800, 1040, 1049, 1172
NaeI GCCGGC 1 cut(s) 1190
NdeII GATC 5 cut(s) 89, 144, 406, 470, 984
NgoMIV GCCGGC 1 cut(s) 1188
NlaIII CATG 6 cut(s) 461, 536, 662, 801, 943, 1179
NmuCI GTSAC 1 cut(s) 737
NspI RCATGY 2 cut(s) 662, 801
PaeI GCATGC 1 cut(s) 662
PciI ACATGT 1 cut(s) 797
PciSI GCTCTTC 2 cut(s) 141, 346
PctI GAATGC 1 cut(s) 967
PdiI GCCGGC 1 cut(s) 1190
PfeI GAWTC 4 cut(s) 188, 716, 1254, 1264
Pfl23II CGTACG 1 cut(s) 192
PfoI TCCNGGA 1 cut(s) 719
PkrI GCNGC 8 cut(s) 28, 31, 43, 338, 364, 757, 793, 1174
PpuMI RGGWCCY 1 cut(s) 253
PscI ACATGT 1 cut(s) 797
Psp124BI GAGCTC 1 cut(s) 654
Psp5II RGGWCCY 1 cut(s) 253
Psp6I CCWGG 4 cut(s) 167, 238, 249, 719
PspGI CCWGG 4 cut(s) 167, 238, 249, 719
PspLI CGTACG 1 cut(s) 192
PspPI GGNCC 2 cut(s) 253, 1084
PspPPI RGGWCCY 1 cut(s) 253
PstNI CAGNNNCTG 1 cut(s) 1172
PsuI RGATCY 1 cut(s) 470
PvuII CAGCTG 1 cut(s) 758
RsaI GTAC 3 cut(s) 194, 631, 1113
RsaNI GTAC 3 cut(s) 193, 630, 1112
SacI GAGCTC 1 cut(s) 654
SapI GCTCTTC 2 cut(s) 141, 346
SaqAI TTAA 6 cut(s) 117, 398, 857, 869, 923, 1229
SatI GCNGC 8 cut(s) 27, 30, 42, 337, 363, 756, 792, 1173
Sau3AI GATC 5 cut(s) 89, 144, 406, 470, 984
Sau96I GGNCC 2 cut(s) 253, 1084
ScaI AGTACT 2 cut(s) 631, 1113
ScrFI CCNGG 4 cut(s) 169, 240, 251, 721
SduI GDGCHC 2 cut(s) 426, 654
SfaNI GCATC 4 cut(s) 832, 1128, 1147, 1237
SfcI CTRYAG 2 cut(s) 501, 1268
SinI GGWCC 1 cut(s) 253
SmlI CTYRAG 2 cut(s) 331, 815
SmoI CTYRAG 2 cut(s) 331, 815
SphI GCATGC 1 cut(s) 662
Sse9I AATT 5 cut(s) 268, 617, 702, 1016, 1239
SsiI CCGC 9 cut(s) 42, 46, 54, 64, 85, 363, 506, 791, 1186
SspMI CTAG 1 cut(s) 1211
SstI GAGCTC 1 cut(s) 654
StyD4I CCNGG 4 cut(s) 167, 238, 249, 719
TaaI ACNGT 4 cut(s) 37, 197, 222, 447
TaqI TCGA 3 cut(s) 324, 583, 1252
TasI AATT 5 cut(s) 268, 617, 702, 1016, 1239
TatI WGTACW 2 cut(s) 629, 1111
TauI GCSGC 3 cut(s) 44, 365, 794
TfiI GAWTC 4 cut(s) 188, 716, 1254, 1264
Tru1I TTAA 6 cut(s) 117, 398, 857, 869, 923, 1229
Tru9I TTAA 6 cut(s) 117, 398, 857, 869, 923, 1229
TscAI CASTG 5 cut(s) 16, 227, 426, 628, 742
TseFI GTSAC 1 cut(s) 737
TseI GCWGC 5 cut(s) 26, 29, 336, 755, 1172
Tsp45I GTSAC 1 cut(s) 737
TspDTI ATGAA 7 cut(s) 201, 219, 312, 477, 568, 741, 1169
TspRI CASTG 5 cut(s) 16, 227, 426, 628, 742
VpaK11BI GGWCC 1 cut(s) 253
XagI CCTNNNNNAGG 1 cut(s) 243
XapI RAATTY 1 cut(s) 617
XceI RCATGY 2 cut(s) 662, 801
XcmI CCANNNNNNNNNTGG 1 cut(s) 802
XmiI GTMKAC 1 cut(s) 693
XspI CTAG 1 cut(s) 1211
ZrmI AGTACT 2 cut(s) 631, 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.