Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005178.1

Orthogroup ID

OG0010243

Physical Location & Seq

Genomic Coordinates Reverse (-)

49841 .. 58804

Gene Structure 8964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2097 bp

atgatgtcaatgacatgccgtagtcttgattttggaagaactgtattggatttggtggcttgtggttgttcttcaaatgctgtgttggaccgctcttcaataaggaattacagaaaggtaaatactaaggggagtagtagaggttatggagctaggcaggtagtttttggtgggagggaccgaactaggtgcggagtttcttcaatgaatgcagctgagactctgctaaatggtgttcctgaaggccttccaagtgtcttggagttgaaggaagagaagagaaggcccatttcgctgacgaatttgtttgaagtggtagctgatgacctcttgacattaaatcaaaatcttcagtcaattgttggtgcagaaaacccggtcttaatgtccgcagctgagcagatatttggcgctggtgggaagcggatgagaccagctttggtgtttctagtctcaagagcaacagcagaaatagttgggttggaggaacttacaaaagaacatcgacgattggcagagattattgaaatgatccatacagcaagcttgatacatgatgatgtattggatgaaagtgacatgcgaagagggaaggaaactgttcatcaaatgtttggtacaagagtggctgtgctagctggggacttcatgtttgcacagtcatcatggtatcttgcaaatcttgaaaatcttcaggtcattaagctcattagccagattgttggtgcagaaaacccggtcttaatgtccgcagctgagcagatatttggcgctggtgggaagcggatgagaccagctttggtgtttctagtctcaagagcaacagcagaaatagttgggttggaggaacttacaaaagaacatcgacgattggcagagattattgaaatgatccatacagcaagcttgatacatgatgatgtattggatgaaagtgacatgcgaagagggaaggaaactgttcatcaaatgtttggtacaagagtggctgtgctagctggggacttcatgtttgcacagtcatcatggtatcttgcaaatcttgaaaatcttcaggtcattaagctcattagccaggttatcaaagattttgcaagtggtgaaataaagcaggcatctagcttgtttgactgtgatgtcaaactggacgagtacttaatcaagagctactacaaaacagcctctttaattgctgccagtaccaaaggagctgctatttttagtggggttgacaacaatgtagctgagaaaatgtataactatggcaagaatcttggtctgtctttccaagttgttgatgacatattggattttacacaatcagcagagcaactggggaagcctgctggaactgatctggccaaaggaaaccttactgccccggttatttttgctctggagaaagagccaaaacttagagatatgattgaatcagaattcagtgaaaccggttcacttgacgaagccattgatttggttaagggtagtggcggcattgaacaagcacaagaattagccaaagaaaaagctcagcttgcaatccaaaatctcgagtgccttcctcggactgcatttcgattagctctagaggatatgatgagactcctcagtcacctgaaacaatggcgagccgtcgcaaccgaagccaagcatgtctccttcgccgtcgcaaagttcatcggtctcatccacctcaccgagtcctacctctgctcctgtaccctcttgcacggtccgagtatgctccctaccttcaattccagcggcgatgtggtgctcgccgagcacctgtcccatcgattagggaaggtggtccccggtgacgtcgtcatagttcggtctcccgacgacccgaaaaagatggtggccaagcgggtcctcggtttggagggtgatcaggtcacttttttcgaccccaatcggattcgcaagcacaatacaactgtggttcctaaggggcacgtttggattcagggagataacacttatgcatcctttgattcacgatcatatggacctgtgccatacggtcttattcaaggcagagtgttcttcagggtatggccacctgatggctttggatcagtggatgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010236 GO:0016740 GO:0016765 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050347 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

698

Amino Acids

76.88

Weight (kDa)

5.96

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	126 - 241	2.2e-35	Polyprenyl synthetase
polyprenyl_synt	PF00348	246 - 492	4.9e-77	Polyprenyl synthetase
Peptidase_S26	PF10502	555 - 636	6.3e-10	Signal peptidase, peptidase S26
Peptidase_S26	PF10502	646 - 688	2.9e-08	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17050 AT1G36623 AT1G78510 AT1G78510
fragaria_vesca	FvH4_3g17330 FvH4_3g17330
malus_domestica	MD03G1252200.v1.1 MD11G1273800.v1.1
prunus_persica	Prupe.4G153300_v2.0.a1
pyrus_communis	pycom03g20020 pycom11g24150
rosa_chinensis	RchiOBHm_Chr5g0028851
rosa_laevigata	RLG00000033119
rosa_multiflora	Rmu_sc0005178.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051040
rosa_rugosa	Rorug05G0110700
rosa_samantha	Rh5AG203200 Rh5BG201200 Rh5CG222300 Rh5DG204900
rosa_wichuraiana	Rw5G018380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1136, 1608
AatII	GACGTC	1 cut(s)	1827
Acc36I	ACCTGC	1 cut(s)	148
AccB7I	CCANNNNNTGG	1 cut(s)	2072
AccBSI	CCGCTC	1 cut(s)	93
AciI	CCGC	9 cut(s)	91, 192, 390, 424, 750, 784, 1491, 1764, 1873
AclWI	GGATC	3 cut(s)	526, 886, 2089
AcoI	YGGCCR	3 cut(s)	1359, 1866, 2063
AcsI	RAATTY	2 cut(s)	301, 1436
AcuI	CTGAAG	5 cut(s)	261, 335, 677, 1037, 2038
AcyI	GRCGYC	1 cut(s)	1824
AfaI	GTAC	5 cut(s)	619, 979, 1154, 1201, 1720
AfiI	CCNNNNNNNGG	2 cut(s)	1885, 2072
AgeI	ACCGGT	1 cut(s)	1448
AjnI	CCWGG	1 cut(s)	1074
Alw21I	GWGCWC	2 cut(s)	1779, 1788
Alw26I	GTCTC	9 cut(s)	212, 424, 457, 784, 817, 1594, 1660, 1688, 1845
AlwI	GGATC	3 cut(s)	526, 886, 2089
Ama87I	CYCGRG	1 cut(s)	1550
AoxI	GGCC	5 cut(s)	244, 284, 1359, 1866, 2063
ApeKI	GCWGC	5 cut(s)	212, 392, 752, 1193, 1211
ApoI	RAATTY	2 cut(s)	301, 1436
ArsI	GACNNNNNNTTYG	4 cut(s)	635, 667, 995, 1027
AsiGI	ACCGGT	1 cut(s)	1448
Asp700I	GAANNNNTTC	5 cut(s)	246, 600, 690, 960, 1050
AspLEI	GCGC	2 cut(s)	413, 773
AspS9I	GGNCC	7 cut(s)	88, 178, 285, 1733, 1813, 1876, 2015
AsuC2I	CCSGG	4 cut(s)	377, 737, 1382, 1818
AsuHPI	GGTGA	5 cut(s)	1112, 1604, 1687, 1832, 1904
AsuNHI	GCTAGC	2 cut(s)	634, 994
AvaI	CYCGRG	1 cut(s)	1550
AvaII	GGWCC	6 cut(s)	88, 178, 1733, 1813, 1876, 2015
AxyI	CCTNAGG	1 cut(s)	1953
BaeGI	GKGCMC	1 cut(s)	1962
BaeI	ACNNNNGTAYC	4 cut(s)	609, 642, 969, 1002
BalI	TGGCCA	3 cut(s)	1361, 1868, 2065
Bbv12I	GWGCWC	2 cut(s)	1779, 1788
BbvI	GCAGC	5 cut(s)	224, 404, 764, 1180, 1198
BccI	CCATC	3 cut(s)	1803, 1855, 2066
BceAI	ACGGC	3 cut(s)	3, 1616, 1649
BcgI	CGANNNNNNTGC	2 cut(s)	171, 205
BciT130I	CCWGG	1 cut(s)	1076
BclI	TGATCA	1 cut(s)	1894
BcnI	CCSGG	4 cut(s)	377, 737, 1382, 1818
BcoDI	GTCTC	9 cut(s)	212, 424, 457, 784, 817, 1594, 1660, 1688, 1845
BfaI	CTAG	8 cut(s)	153, 186, 449, 635, 809, 995, 1119, 1586
BfoI	RGCGCY	2 cut(s)	414, 774
BfuAI	ACCTGC	1 cut(s)	148
BisI	GCNGC	7 cut(s)	213, 393, 753, 1194, 1212, 1492, 1765
BlpI	GCTNAGC	3 cut(s)	396, 756, 1530
BlsI	GCNGC	7 cut(s)	214, 394, 754, 1195, 1213, 1493, 1766
BmcAI	AGTACT	1 cut(s)	1154
Bme1390I	CCNGG	5 cut(s)	377, 737, 1076, 1382, 1818
Bme18I	GGWCC	6 cut(s)	88, 178, 1733, 1813, 1876, 2015
BmeT110I	CYCGRG	1 cut(s)	1550
BmgT120I	GGNCC	7 cut(s)	88, 178, 285, 1733, 1813, 1876, 2015
BmiI	GGNNCC	4 cut(s)	179, 1815, 1877, 1950
BmrFI	CCNGG	5 cut(s)	377, 737, 1076, 1382, 1818
BmrI	ACTGGG	1 cut(s)	1343
BmsI	GCATC	2 cut(s)	1124, 2000
BmtI	GCTAGC	2 cut(s)	638, 998
BmuI	ACTGGG	1 cut(s)	1343
BpmI	CTGGAG	1 cut(s)	1418
Bpu1102I	GCTNAGC	3 cut(s)	396, 756, 1530
BpuEI	CTTGAG	2 cut(s)	439, 799
BpuMI	CCSGG	4 cut(s)	377, 737, 1382, 1818
Bsa29I	ATCGAT	1 cut(s)	1798
BsaHI	GRCGYC	1 cut(s)	1824
BsaI	GGTCTC	4 cut(s)	424, 784, 1688, 1845
BsaJI	CCNNGG	4 cut(s)	1380, 1562, 1816, 1879
BsaWI	WCCGGW	1 cut(s)	1448
BsaXI	ACNNNNNCTCC	2 cut(s)	1697, 1727
Bsc4I	CCNNNNNNNGG	2 cut(s)	1885, 2072
Bse118I	RCCGGY	1 cut(s)	1448
Bse1I	ACTGG	3 cut(s)	1149, 1197, 1338
Bse21I	CCTNAGG	1 cut(s)	1953
BseBI	CCWGG	1 cut(s)	1076
BseCI	ATCGAT	1 cut(s)	1798
BseDI	CCNNGG	4 cut(s)	1380, 1562, 1816, 1879
BseGI	GGATG	7 cut(s)	432, 574, 792, 934, 1686, 1991, 2095
BseLI	CCNNNNNNNGG	2 cut(s)	1885, 2072
BseMII	CTCAG	6 cut(s)	207, 387, 747, 1236, 1544, 1621
BseNI	ACTGG	3 cut(s)	1149, 1197, 1338
BseRI	GAGGAG	1 cut(s)	1595
BseSI	GKGCMC	1 cut(s)	1962
BseXI	GCAGC	5 cut(s)	224, 404, 764, 1180, 1198
BseYI	CCCAGC	2 cut(s)	638, 998
BsgI	GTGCAG	2 cut(s)	387, 747
BshFI	GGCC	5 cut(s)	246, 286, 1361, 1868, 2065
BshTI	ACCGGT	1 cut(s)	1448
BshVI	ATCGAT	1 cut(s)	1798
BsiHKAI	GWGCWC	2 cut(s)	1779, 1788
BsiHKCI	CYCGRG	1 cut(s)	1550
BsiSI	CCGG	5 cut(s)	377, 737, 1382, 1449, 1818
BslFI	GGGAC	5 cut(s)	191, 656, 1016, 1777, 1799
BslI	CCNNNNNNNGG	2 cut(s)	1885, 2072
BsmAI	GTCTC	9 cut(s)	212, 424, 457, 784, 817, 1594, 1660, 1688, 1845
BsmFI	GGGAC	5 cut(s)	191, 656, 1016, 1777, 1799
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	5 cut(s)	246, 286, 1361, 1868, 2065
Bso31I	GGTCTC	4 cut(s)	424, 784, 1688, 1845
BsoBI	CYCGRG	1 cut(s)	1550
Bsp1286I	GDGCHC	3 cut(s)	1779, 1788, 1962
Bsp143I	GATC	6 cut(s)	531, 891, 1354, 1894, 2006, 2081
Bsp1720I	GCTNAGC	3 cut(s)	396, 756, 1530
BspACI	CCGC	9 cut(s)	91, 192, 390, 424, 750, 784, 1491, 1764, 1873
BspANI	GGCC	5 cut(s)	246, 286, 1361, 1868, 2065
BspCNI	CTCAG	6 cut(s)	208, 388, 748, 1237, 1543, 1620
BspDI	ATCGAT	1 cut(s)	1798
BspLI	GGNNCC	4 cut(s)	179, 1815, 1877, 1950
BspMI	ACCTGC	1 cut(s)	148
BspOI	GCTAGC	2 cut(s)	638, 998
BspPI	GGATC	3 cut(s)	526, 886, 2089
BspQI	GCTCTTC	1 cut(s)	100
BspTNI	GGTCTC	4 cut(s)	424, 784, 1688, 1845
BsrBI	CCGCTC	1 cut(s)	93
BsrFI	RCCGGY	1 cut(s)	1448
BsrI	ACTGG	3 cut(s)	1149, 1197, 1338
BssAI	RCCGGY	1 cut(s)	1448
BssECI	CCNNGG	4 cut(s)	1380, 1562, 1816, 1879
BssMI	GATC	6 cut(s)	531, 891, 1354, 1894, 2006, 2081
BssNI	GRCGYC	1 cut(s)	1824
Bst2UI	CCWGG	1 cut(s)	1076
Bst4CI	ACNGT	9 cut(s)	43, 601, 660, 961, 1020, 1133, 1733, 1945, 2030
Bst6I	CTCTTC	5 cut(s)	100, 267, 272, 580, 940
BstACI	GRCGYC	1 cut(s)	1824
BstDEI	CTNAG	9 cut(s)	126, 216, 396, 756, 1245, 1415, 1530, 1607, 1953
BstF5I	GGATG	7 cut(s)	432, 574, 792, 934, 1686, 1991, 2095
BstH2I	RGCGCY	2 cut(s)	414, 774
BstHHI	GCGC	2 cut(s)	413, 773
BstKTI	GATC	6 cut(s)	534, 894, 1357, 1897, 2009, 2084
BstMAI	GTCTC	9 cut(s)	212, 424, 457, 784, 817, 1594, 1660, 1688, 1845
BstMBI	GATC	6 cut(s)	531, 891, 1354, 1894, 2006, 2081
BstMWI	GCNNNNNNNGC	6 cut(s)	292, 635, 995, 1535, 1643, 1783
BstNI	CCWGG	1 cut(s)	1076
BstNSI	RCATGY	4 cut(s)	18, 583, 943, 1655
BstSCI	CCNGG	5 cut(s)	375, 735, 1074, 1380, 1816
BstSLI	GKGCMC	1 cut(s)	1962
BstV1I	GCAGC	5 cut(s)	224, 404, 764, 1180, 1198
BstXI	CCANNNNNNTGG	2 cut(s)	722, 1474
Bsu15I	ATCGAT	1 cut(s)	1798
Bsu36I	CCTNAGG	1 cut(s)	1953
BsuRI	GGCC	5 cut(s)	246, 286, 1361, 1868, 2065
BsuTUI	ATCGAT	1 cut(s)	1798
BtgZI	GCGATG	1 cut(s)	1782
BtsCI	GGATG	7 cut(s)	432, 574, 792, 934, 1686, 1991, 2095
BtsIMutI	CAGTG	2 cut(s)	1447, 2091
BveI	ACCTGC	1 cut(s)	148
CfoI	GCGC	2 cut(s)	413, 773
Cfr10I	RCCGGY	1 cut(s)	1448
Cfr13I	GGNCC	7 cut(s)	88, 178, 285, 1733, 1813, 1876, 2015
ClaI	ATCGAT	1 cut(s)	1798
CpoI	CGGWCCG	1 cut(s)	1733
Csp6I	GTAC	5 cut(s)	618, 978, 1153, 1200, 1719
CspAI	ACCGGT	1 cut(s)	1448
CspI	CGGWCCG	1 cut(s)	1733
CviQI	GTAC	5 cut(s)	618, 978, 1153, 1200, 1719
DdeI	CTNAG	9 cut(s)	126, 216, 396, 756, 1245, 1415, 1530, 1607, 1953
DpnI	GATC	6 cut(s)	533, 893, 1356, 1896, 2008, 2083
DpnII	GATC	6 cut(s)	531, 891, 1354, 1894, 2006, 2081
DrdI	GACNNNNNNGTC	2 cut(s)	1136, 1608
DseDI	GACNNNNNNGTC	2 cut(s)	1136, 1608
EaeI	YGGCCR	3 cut(s)	1359, 1866, 2063
Eam1104I	CTCTTC	5 cut(s)	100, 267, 272, 580, 940
EarI	CTCTTC	5 cut(s)	100, 267, 272, 580, 940
Eco147I	AGGCCT	1 cut(s)	246
Eco31I	GGTCTC	4 cut(s)	424, 784, 1688, 1845
Eco47I	GGWCC	6 cut(s)	88, 178, 1733, 1813, 1876, 2015
Eco57I	CTGAAG	5 cut(s)	261, 335, 677, 1037, 2038
Eco81I	CCTNAGG	1 cut(s)	1953
Eco88I	CYCGRG	1 cut(s)	1550
EcoO109I	RGGNCCY	1 cut(s)	1876
EcoRI	GAATTC	1 cut(s)	1436
EcoRII	CCWGG	1 cut(s)	1074
EcoT22I	ATGCAT	1 cut(s)	1993
FalI	AAGNNNNNCTT	4 cut(s)	1356, 1388, 1518, 1550
FaqI	GGGAC	5 cut(s)	191, 656, 1016, 1777, 1799
FauI	CCCGC	1 cut(s)	1866
FauNDI	CATATG	1 cut(s)	2011
FbaI	TGATCA	1 cut(s)	1894
Fnu4HI	GCNGC	7 cut(s)	213, 393, 753, 1194, 1212, 1492, 1765
FokI	GGATG	6 cut(s)	439, 581, 799, 941, 1673, 1978
Fsp4HI	GCNGC	7 cut(s)	213, 393, 753, 1194, 1212, 1492, 1765
FspBI	CTAG	8 cut(s)	153, 186, 449, 635, 809, 995, 1119, 1586
GlaI	GCGC	2 cut(s)	412, 772
GluI	GCNGC	7 cut(s)	213, 393, 753, 1194, 1212, 1492, 1765
GsaI	CCCAGC	2 cut(s)	642, 1002
GsuI	CTGGAG	1 cut(s)	1418
HaeII	RGCGCY	2 cut(s)	414, 774
HaeIII	GGCC	5 cut(s)	246, 286, 1361, 1868, 2065
HapII	CCGG	5 cut(s)	377, 737, 1382, 1449, 1818
HhaI	GCGC	2 cut(s)	413, 773
Hin1I	GRCGYC	1 cut(s)	1824
Hin6I	GCGC	2 cut(s)	411, 771
HinP1I	GCGC	2 cut(s)	411, 771
HincII	GTYRAC	1 cut(s)	1231
HindII	GTYRAC	1 cut(s)	1231
HindIII	AAGCTT	2 cut(s)	544, 904
HinfI	GANTC	8 cut(s)	220, 1270, 1430, 1602, 1700, 1924, 1969, 2000
HpaII	CCGG	5 cut(s)	377, 737, 1382, 1449, 1818
HphI	GGTGA	5 cut(s)	1112, 1604, 1687, 1832, 1904
Hpy166II	GTNNAC	2 cut(s)	1231, 1454
Hpy188I	TCNGA	4 cut(s)	1435, 1566, 1737, 1923
Hpy8I	GTNNAC	2 cut(s)	1231, 1454
Hpy99I	CGWCG	6 cut(s)	510, 870, 1637, 1670, 1829, 1850
HpyCH4III	ACNGT	9 cut(s)	43, 601, 660, 961, 1020, 1133, 1733, 1945, 2030
HpyCH4IV	ACGT	2 cut(s)	1824, 1962
HpyF10VI	GCNNNNNNNGC	6 cut(s)	292, 635, 995, 1535, 1643, 1783
HpyF3I	CTNAG	9 cut(s)	126, 216, 396, 756, 1245, 1415, 1530, 1607, 1953
HpySE526I	ACGT	2 cut(s)	1824, 1962
Hsp92I	GRCGYC	1 cut(s)	1824
HspAI	GCGC	2 cut(s)	411, 771
Ksp22I	TGATCA	1 cut(s)	1894
Kzo9I	GATC	6 cut(s)	531, 891, 1354, 1894, 2006, 2081
LguI	GCTCTTC	1 cut(s)	100
LmnI	GCTCC	4 cut(s)	149, 1208, 1718, 1749
Lsp1109I	GCAGC	5 cut(s)	224, 404, 764, 1180, 1198
LweI	GCATC	2 cut(s)	1124, 2000
MaeI	CTAG	8 cut(s)	153, 186, 449, 635, 809, 995, 1119, 1586
MaeII	ACGT	2 cut(s)	1824, 1962
MaeIII	GTNAC	5 cut(s)	575, 935, 1610, 1820, 1900
MalI	GATC	6 cut(s)	533, 893, 1356, 1896, 2008, 2083
MbiI	CCGCTC	1 cut(s)	93
MboI	GATC	6 cut(s)	531, 891, 1354, 1894, 2006, 2081
MfeI	CAATTG	1 cut(s)	357
MhlI	GDGCHC	3 cut(s)	1779, 1788, 1962
MlsI	TGGCCA	3 cut(s)	1361, 1868, 2065
MluCI	AATT	7 cut(s)	106, 301, 357, 1188, 1436, 1511, 1756
MluNI	TGGCCA	3 cut(s)	1361, 1868, 2065
MlyI	GAGTC	3 cut(s)	214, 1596, 1709
MmeI	TCCRAC	3 cut(s)	66, 462, 822
Mox20I	TGGCCA	3 cut(s)	1361, 1868, 2065
Mph1103I	ATGCAT	1 cut(s)	1993
MroXI	GAANNNNTTC	5 cut(s)	246, 600, 690, 960, 1050
MscI	TGGCCA	3 cut(s)	1361, 1868, 2065
MseI	TTAA	8 cut(s)	338, 383, 702, 743, 1062, 1157, 1187, 1479
MslI	CAYNNNNRTG	2 cut(s)	558, 918
Msp20I	TGGCCA	3 cut(s)	1361, 1868, 2065
MspA1I	CMGCKG	4 cut(s)	215, 395, 755, 1764
MspI	CCGG	5 cut(s)	377, 737, 1382, 1449, 1818
MspR9I	CCNGG	5 cut(s)	377, 737, 1076, 1382, 1818
MunI	CAATTG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	1076
MwoI	GCNNNNNNNGC	6 cut(s)	292, 635, 995, 1535, 1643, 1783
NciI	CCSGG	4 cut(s)	377, 737, 1382, 1818
NdeI	CATATG	1 cut(s)	2011
NdeII	GATC	6 cut(s)	531, 891, 1354, 1894, 2006, 2081
NheI	GCTAGC	2 cut(s)	634, 994
NlaIV	GGNNCC	4 cut(s)	179, 1815, 1877, 1950
NmeAIII	GCCGAG	1 cut(s)	1807
NmuCI	GTSAC	5 cut(s)	575, 935, 1610, 1820, 1900
NsiI	ATGCAT	1 cut(s)	1993
NspI	RCATGY	4 cut(s)	18, 583, 943, 1655
PaeR7I	CTCGAG	1 cut(s)	1550
PceI	AGGCCT	1 cut(s)	246
PciSI	GCTCTTC	1 cut(s)	100
PctI	GAATGC	1 cut(s)	214
PdmI	GAANNNNTTC	5 cut(s)	246, 600, 690, 960, 1050
PfeI	GAWTC	5 cut(s)	1270, 1430, 1924, 1969, 2000
PflFI	GACNNNGTC	1 cut(s)	1826
PflMI	CCANNNNNTGG	1 cut(s)	2072
PinAI	ACCGGT	1 cut(s)	1448
PkrI	GCNGC	7 cut(s)	214, 394, 754, 1195, 1213, 1493, 1766
PleI	GAGTC	3 cut(s)	214, 1596, 1708
PpsI	GAGTC	3 cut(s)	214, 1596, 1708
PpuMI	RGGWCCY	1 cut(s)	1876
Psp5II	RGGWCCY	1 cut(s)	1876
Psp6I	CCWGG	1 cut(s)	1074
PspFI	CCCAGC	2 cut(s)	638, 998
PspGI	CCWGG	1 cut(s)	1074
PspN4I	GGNNCC	4 cut(s)	179, 1815, 1877, 1950
PspPI	GGNCC	7 cut(s)	88, 178, 285, 1733, 1813, 1876, 2015
PspPPI	RGGWCCY	1 cut(s)	1876
PsyI	GACNNNGTC	1 cut(s)	1826
PvuII	CAGCTG	3 cut(s)	215, 395, 755
RsaI	GTAC	5 cut(s)	619, 979, 1154, 1201, 1720
RsaNI	GTAC	5 cut(s)	618, 978, 1153, 1200, 1719
RseI	CAYNNNNRTG	2 cut(s)	558, 918
Rsr2I	CGGWCCG	1 cut(s)	1733
RsrII	CGGWCCG	1 cut(s)	1733
SapI	GCTCTTC	1 cut(s)	100
SaqAI	TTAA	8 cut(s)	338, 383, 702, 743, 1062, 1157, 1187, 1479
SatI	GCNGC	7 cut(s)	213, 393, 753, 1194, 1212, 1492, 1765
Sau3AI	GATC	6 cut(s)	531, 891, 1354, 1894, 2006, 2081
Sau96I	GGNCC	7 cut(s)	88, 178, 285, 1733, 1813, 1876, 2015
ScaI	AGTACT	1 cut(s)	1154
SchI	GAGTC	3 cut(s)	214, 1596, 1709
ScrFI	CCNGG	5 cut(s)	377, 737, 1076, 1382, 1818
SduI	GDGCHC	3 cut(s)	1779, 1788, 1962
SfaNI	GCATC	2 cut(s)	1124, 2000
Sfr274I	CTCGAG	1 cut(s)	1550
SinI	GGWCC	6 cut(s)	88, 178, 1733, 1813, 1876, 2015
SlaI	CTCGAG	1 cut(s)	1550
SmiMI	CAYNNNNRTG	2 cut(s)	558, 918
SmlI	CTYRAG	3 cut(s)	454, 814, 1550
SmoI	CTYRAG	3 cut(s)	454, 814, 1550
Sse9I	AATT	7 cut(s)	106, 301, 357, 1188, 1436, 1511, 1756
SseBI	AGGCCT	1 cut(s)	246
SsiI	CCGC	9 cut(s)	91, 192, 390, 424, 750, 784, 1491, 1764, 1873
SspMI	CTAG	8 cut(s)	153, 186, 449, 635, 809, 995, 1119, 1586
StuI	AGGCCT	1 cut(s)	246
StyD4I	CCNGG	5 cut(s)	375, 735, 1074, 1380, 1816
TaaI	ACNGT	9 cut(s)	43, 601, 660, 961, 1020, 1133, 1733, 1945, 2030
TaiI	ACGT	2 cut(s)	1827, 1965
TaqI	TCGA	6 cut(s)	505, 865, 1551, 1576, 1798, 1911
TaqII	GACCGA	3 cut(s)	195, 1670, 1827
TasI	AATT	7 cut(s)	106, 301, 357, 1188, 1436, 1511, 1756
TatI	WGTACW	1 cut(s)	1152
TauI	GCSGC	2 cut(s)	1494, 1767
TfiI	GAWTC	5 cut(s)	1270, 1430, 1924, 1969, 2000
Tru1I	TTAA	8 cut(s)	338, 383, 702, 743, 1062, 1157, 1187, 1479
Tru9I	TTAA	8 cut(s)	338, 383, 702, 743, 1062, 1157, 1187, 1479
TscAI	CASTG	2 cut(s)	1447, 2091
TseFI	GTSAC	5 cut(s)	575, 935, 1610, 1820, 1900
TseI	GCWGC	5 cut(s)	212, 392, 752, 1193, 1211
Tsp45I	GTSAC	5 cut(s)	575, 935, 1610, 1820, 1900
TspDTI	ATGAA	8 cut(s)	221, 585, 593, 637, 945, 953, 997, 1666
TspRI	CASTG	2 cut(s)	1447, 2091
Tth111I	GACNNNGTC	1 cut(s)	1826
Van91I	CCANNNNNTGG	1 cut(s)	2072
VpaK11BI	GGWCC	6 cut(s)	88, 178, 1733, 1813, 1876, 2015
XapI	RAATTY	2 cut(s)	301, 1436
XbaI	TCTAGA	1 cut(s)	1585
XceI	RCATGY	4 cut(s)	18, 583, 943, 1655
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1768
XhoI	CTCGAG	1 cut(s)	1550
XmnI	GAANNNNTTC	5 cut(s)	246, 600, 690, 960, 1050
XspI	CTAG	8 cut(s)	153, 186, 449, 635, 809, 995, 1119, 1586
ZraI	GACGTC	1 cut(s)	1825
ZrmI	AGTACT	1 cut(s)	1154
Zsp2I	ATGCAT	1 cut(s)	1993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.