Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005285.1

Orthogroup ID

OG0009544

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2801

Gene Structure 2801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005285.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 424 bp

atggagcagatccagttcaatcctccagggttactgaacaaggtgctgatgaaacagttgcttttgctttgttgtgtgatgtctgtcgctgatgccaatgtaccctatgatttacacaaagcgcccacagtatcttcgacgagtactgcacctttggcagcacctcctatgccaaatcttcctttgccagccaggttgcaacatttcgtgccgcgtggtgctcccatggcattttcacctgctcctctaaatggccccttggtaactgctgctaatccaccgacaacttctcaattgtcaaagccaccaaagagcagtggcttagcacctcctcttgctggctttaagagtattgctcctcagtctattgctggttcaattcctcctggtttagataagccaccaatctctccatccagttcca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

141

Amino Acids

14.5

Weight (kDa)

9.63

Isoelectric Point (pI)

62.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02010
malus_domestica	MD09G1283200.v1.1 MD17G1274000.v1.1
prunus_persica	Prupe.3G011000_v2.0.a1 Prupe.3G011000_v2.0.a1 Prupe.3G011000_v2.0.a1
pyrus_communis	pycom09g19120 pycom17g27200
rosa_chinensis	RchiOBHm_Chr3g0487601
rosa_laevigata	RLG00000022997
rosa_multiflora	Rmu_sc0005285.1_g000001 Rmu_sc0012412.1_g000008
rosa_roxburghii	Rroxscaffold_6G00394660
rosa_rugosa	Rorug03G0234600 Rorug03G0234700 Rorug03G0234800 Rorug03G0234900
rosa_samantha	Rh3AG283200 Rh3BG318900 Rh3CG317000 Rh3DG315200
rosa_wichuraiana	Rw3G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	247
Acc36I	ACCTGC	1 cut(s)	247
AccII	CGCG	1 cut(s)	214
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	1 cut(s)	4
AfaI	GTAC	2 cut(s)	102, 145
AfiI	CCNNNNNNNGG	2 cut(s)	251, 338
AgsI	TTSAA	2 cut(s)	19, 378
AjnI	CCWGG	3 cut(s)	25, 191, 385
Alw21I	GWGCWC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	4
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	2 cut(s)	158, 269
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	2 cut(s)	170, 256
BccI	CCATC	1 cut(s)	421
BciT130I	CCWGG	3 cut(s)	27, 193, 387
BfoI	RGCGCY	1 cut(s)	125
BfuAI	ACCTGC	1 cut(s)	247
BisI	GCNGC	3 cut(s)	159, 212, 270
BlpI	GCTNAGC	1 cut(s)	322
BlsI	GCNGC	3 cut(s)	160, 213, 271
BmcAI	AGTACT	1 cut(s)	145
Bme1390I	CCNGG	3 cut(s)	27, 193, 387
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	3 cut(s)	27, 193, 387
BmsI	GCATC	1 cut(s)	82
BplI	GAGNNNNNCTC	2 cut(s)	340, 372
BpmI	CTGGAG	1 cut(s)	9
Bpu1102I	GCTNAGC	1 cut(s)	322
BsaJI	CCNNGG	3 cut(s)	26, 225, 258
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 338
Bse1I	ACTGG	2 cut(s)	13, 417
BseBI	CCWGG	3 cut(s)	27, 193, 387
BseDI	CCNNGG	3 cut(s)	26, 225, 258
BseGI	GGATG	1 cut(s)	413
BseLI	CCNNNNNNNGG	2 cut(s)	251, 338
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	2 cut(s)	13, 417
BseRI	GAGGAG	3 cut(s)	234, 321, 348
BseXI	GCAGC	2 cut(s)	170, 256
BsgI	GTGCAG	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	214
BshFI	GGCC	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	223
BslI	CCNNNNNNNGG	2 cut(s)	251, 338
BsnI	GGCC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	1 cut(s)	9
Bsp1720I	GCTNAGC	1 cut(s)	322
Bsp19I	CCATGG	1 cut(s)	225
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	1 cut(s)	373
BspFNI	CGCG	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	13, 417
BssECI	CCNNGG	3 cut(s)	26, 225, 258
BssMI	GATC	1 cut(s)	9
BssT1I	CCWWGG	2 cut(s)	225, 258
Bst2UI	CCWGG	3 cut(s)	27, 193, 387
Bst4CI	ACNGT	2 cut(s)	57, 130
BstC8I	GCNNGC	2 cut(s)	189, 340
BstDEI	CTNAG	2 cut(s)	322, 360
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	413
BstFNI	CGCG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 227
BstNI	CCWGG	3 cut(s)	27, 193, 387
BstSCI	CCNGG	3 cut(s)	25, 191, 385
BstUI	CGCG	1 cut(s)	214
BstV1I	GCAGC	2 cut(s)	170, 256
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	255
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	413
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	322
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	2 cut(s)	189, 340
CfoI	GCGC	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	101, 144
CviAII	CATG	1 cut(s)	226
CviJI	RGCY	6 cut(s)	191, 255, 304, 321, 342, 400
CviKI_1	RGCY	6 cut(s)	191, 255, 304, 321, 342, 400
CviQI	GTAC	2 cut(s)	101, 144
DdeI	CTNAG	2 cut(s)	322, 360
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
Eco130I	CCWWGG	2 cut(s)	225, 258
EcoRII	CCWGG	3 cut(s)	25, 191, 385
EcoT14I	CCWWGG	2 cut(s)	225, 258
ErhI	CCWWGG	2 cut(s)	225, 258
FaeI	CATG	1 cut(s)	229
FaiI	YATR	3 cut(s)	108, 170, 227
FatI	CATG	1 cut(s)	225
Fnu4HI	GCNGC	3 cut(s)	159, 212, 270
FokI	GGATG	1 cut(s)	400
Fsp4HI	GCNGC	3 cut(s)	159, 212, 270
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	3 cut(s)	159, 212, 270
GsuI	CTGGAG	1 cut(s)	9
HaeII	RGCGCY	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	255
HhaI	GCGC	1 cut(s)	124
Hin1II	CATG	1 cut(s)	229
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HphI	GGTGA	1 cut(s)	228
Hpy99I	CGWCG	1 cut(s)	142
HpyCH4III	ACNGT	2 cut(s)	57, 130
HpyCH4V	TGCA	2 cut(s)	149, 199
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 227
HpyF3I	CTNAG	2 cut(s)	322, 360
Hsp92II	CATG	1 cut(s)	229
HspAI	GCGC	1 cut(s)	122
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	4 cut(s)	4, 226, 247, 361
Lsp1109I	GCAGC	2 cut(s)	170, 256
LweI	GCATC	1 cut(s)	82
MaeIII	GTNAC	2 cut(s)	30, 262
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	2 cut(s)	126, 170
MfeI	CAATTG	1 cut(s)	293
MflI	RGATCY	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	2 cut(s)	293, 378
MnlI	CCTC	7 cut(s)	33, 174, 255, 339, 342, 369, 393
MseI	TTAA	1 cut(s)	345
MspR9I	CCNGG	3 cut(s)	27, 193, 387
MunI	CAATTG	1 cut(s)	293
MvaI	CCWGG	3 cut(s)	27, 193, 387
MvnI	CGCG	1 cut(s)	214
MwoI	GCNNNNNNNGC	2 cut(s)	155, 227
NcoI	CCATGG	1 cut(s)	225
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	1 cut(s)	229
NlaIV	GGNNCC	1 cut(s)	256
PaqCI	CACCTGC	1 cut(s)	247
PkrI	GCNGC	3 cut(s)	160, 213, 271
Psp6I	CCWGG	3 cut(s)	25, 191, 385
PspGI	CCWGG	3 cut(s)	25, 191, 385
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	9
RsaI	GTAC	2 cut(s)	102, 145
RsaNI	GTAC	2 cut(s)	101, 144
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	3 cut(s)	159, 212, 270
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	254
ScaI	AGTACT	1 cut(s)	145
ScrFI	CCNGG	3 cut(s)	27, 193, 387
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	6 cut(s)	45, 154, 166, 197, 241, 331
SfaNI	GCATC	1 cut(s)	82
Sse9I	AATT	2 cut(s)	293, 378
SsiI	CCGC	1 cut(s)	212
StyD4I	CCNGG	3 cut(s)	25, 191, 385
StyI	CCWWGG	2 cut(s)	225, 258
TaaI	ACNGT	2 cut(s)	57, 130
TaqI	TCGA	1 cut(s)	137
TasI	AATT	2 cut(s)	293, 378
TatI	WGTACW	1 cut(s)	143
TauI	GCSGC	1 cut(s)	214
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	2 cut(s)	158, 269
TspDTI	ATGAA	1 cut(s)	65
TspRI	CASTG	1 cut(s)	322
ZrmI	AGTACT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.