Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009544

Physical Location & Seq

Genomic Coordinates Forward (+)

21687418 .. 21688196

Gene Structure 779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0234600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCTAAGACCCTCCAAAACTTCAGTTCCCTCTGCATCATTCCCTTGACTCTTCTCCTCCTCTTAACCCTCGTCGGTGCCAGCGAGCACCGCTTCTCAAGACCCTTGTCCCGAGCCAAACTTGGCCTAAAGAAAGAGAAACTGAGCCATCTCCGGTTCTACTTCCACGACATAGTCAGCGGCCACAGCCCAACAGTCGTTAGGGTCGCTGAGGCTCCCACGACCAAAAACTCCAGCACGGCTTTCGGTGCAGTGATGATGATGGATGACCCCTTGACTGCCGGACCGGAGCTGGGAACCAAGCTAGTCGGCAAGGCACAAGGCATTTATGCTTCGGCCTCGCAAACCGAGTTAGGGCTTTTGATGGTGCTGAACTTTGCTTTTGTGGAAGGGAAGTATAATGGGAGTAATCTGAGCGTGTTGGGAAGGAACGCGGTGTTCTCCGCCGTGAGGGAGATGCCAATAGTTGGCGGGAGCGGCCTTTTCCGGTTTGCTAGGGGGTATGCTCGTGCTAGGACTCACAAGGTTGATTTGAACACTGGGGATGCTGTGGTGGAGTATAATGTCTACGTTCTCCATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

194

Amino Acids

21.08

Weight (kDa)

9.75

Isoelectric Point (pI)

23.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	49 - 191	4.5e-58	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02010
malus_domestica	MD09G1283200.v1.1 MD17G1274000.v1.1
prunus_persica	Prupe.3G011000_v2.0.a1 Prupe.3G011000_v2.0.a1 Prupe.3G011000_v2.0.a1
pyrus_communis	pycom09g19120 pycom17g27200
rosa_chinensis	RchiOBHm_Chr3g0487601
rosa_laevigata	RLG00000022997
rosa_multiflora	Rmu_sc0005285.1_g000001 Rmu_sc0012412.1_g000008
rosa_roxburghii	Rroxscaffold_6G00394660
rosa_rugosa	Rorug03G0234600 Rorug03G0234700 Rorug03G0234800 Rorug03G0234900
rosa_samantha	Rh3AG283200 Rh3BG318900 Rh3CG317000 Rh3DG315200
rosa_wichuraiana	Rw3G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AccB7I	CCANNNNNTGG	1 cut(s)	467
AccBSI	CCGCTC	1 cut(s)	477
AccI	GTMKAC	1 cut(s)	567
AccII	CGCG	1 cut(s)	434
AciI	CCGC	6 cut(s)	91, 180, 434, 444, 471, 477
AcoI	YGGCCR	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	7
AfiI	CCNNNNNNNGG	4 cut(s)	293, 354, 450, 467
AgsI	TTSAA	1 cut(s)	535
AluBI	AGCT	2 cut(s)	292, 304
AluI	AGCT	2 cut(s)	292, 304
Alw21I	GWGCWC	1 cut(s)	90
Ama87I	CYCGRG	1 cut(s)	111
AoxI	GGCC	4 cut(s)	124, 181, 336, 478
AspS9I	GGNCC	1 cut(s)	284
AvaI	CYCGRG	1 cut(s)	111
AvaII	GGWCC	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	77
BauI	CACGAG	1 cut(s)	507
Bbv12I	GWGCWC	1 cut(s)	90
BbvCI	CCTCAGC	1 cut(s)	210
BccI	CCATC	3 cut(s)	156, 256, 358
BceAI	ACGGC	2 cut(s)	255, 431
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BfaI	CTAG	3 cut(s)	305, 495, 513
BisI	GCNGC	2 cut(s)	181, 478
BlsI	GCNGC	2 cut(s)	182, 479
Bme18I	GGWCC	1 cut(s)	284
BmeT110I	CYCGRG	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	3 cut(s)	79, 216, 298
BmrI	ACTGGG	1 cut(s)	549
BmsI	GCATC	3 cut(s)	45, 447, 535
BmuI	ACTGGG	1 cut(s)	549
BoxI	GACNNNNGTC	1 cut(s)	106
BpmI	CTGGAG	1 cut(s)	217
Bpu10I	CCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	82
BsaWI	WCCGGW	3 cut(s)	153, 286, 486
Bsc4I	CCNNNNNNNGG	4 cut(s)	293, 354, 450, 467
Bse1I	ACTGG	1 cut(s)	544
BseGI	GGATG	2 cut(s)	271, 550
BseLI	CCNNNNNNNGG	4 cut(s)	293, 354, 450, 467
BseMII	CTCAG	3 cut(s)	134, 201, 404
BseNI	ACTGG	1 cut(s)	544
BseRI	GAGGAG	2 cut(s)	47, 50
BseYI	CCCAGC	1 cut(s)	292
BsgI	GTGCAG	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	434
BshFI	GGCC	4 cut(s)	126, 183, 338, 480
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	90
BsiHKCI	CYCGRG	1 cut(s)	111
BsiSI	CCGG	4 cut(s)	154, 282, 287, 487
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	4 cut(s)	293, 354, 450, 467
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	4 cut(s)	126, 183, 338, 480
BsoBI	CYCGRG	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	90
BspACI	CCGC	6 cut(s)	91, 180, 434, 444, 471, 477
BspANI	GGCC	4 cut(s)	126, 183, 338, 480
BspCNI	CTCAG	3 cut(s)	135, 202, 405
BspFNI	CGCG	1 cut(s)	434
BspLI	GGNNCC	3 cut(s)	79, 216, 298
BspT107I	GGYRCC	1 cut(s)	77
BsrBI	CCGCTC	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	544
BssSI	CACGAG	1 cut(s)	507
Bst2BI	CACGAG	1 cut(s)	507
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	82, 86
BstDEI	CTNAG	4 cut(s)	6, 143, 210, 413
BstF5I	GGATG	2 cut(s)	271, 550
BstFNI	CGCG	1 cut(s)	434
BstMWI	GCNNNNNNNGC	4 cut(s)	90, 186, 248, 477
BstPAI	GACNNNNGTC	1 cut(s)	106
BstUI	CGCG	1 cut(s)	434
BsuRI	GGCC	4 cut(s)	126, 183, 338, 480
BtsCI	GGATG	2 cut(s)	271, 550
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	2 cut(s)	258, 537
Cac8I	GCNNGC	2 cut(s)	82, 86
Cfr13I	GGNCC	1 cut(s)	284
CpoI	CGGWCCG	1 cut(s)	284
CspI	CGGWCCG	1 cut(s)	284
DdeI	CTNAG	4 cut(s)	6, 143, 210, 413
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	7
Eco88I	CYCGRG	1 cut(s)	111
FaiI	YATR	5 cut(s)	173, 330, 399, 504, 561
FaqI	GGGAC	1 cut(s)	94
FauI	CCCGC	1 cut(s)	464
FblI	GTMKAC	1 cut(s)	567
Fnu4HI	GCNGC	2 cut(s)	181, 478
FokI	GGATG	2 cut(s)	278, 557
Fsp4HI	GCNGC	2 cut(s)	181, 478
FspBI	CTAG	3 cut(s)	305, 495, 513
GluI	GCNGC	2 cut(s)	181, 478
GsaI	CCCAGC	1 cut(s)	296
GsuI	CTGGAG	1 cut(s)	217
HaeIII	GGCC	4 cut(s)	126, 183, 338, 480
HapII	CCGG	4 cut(s)	154, 282, 287, 487
HinfI	GANTC	2 cut(s)	49, 517
HpaII	CCGG	4 cut(s)	154, 282, 287, 487
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188I	TCNGA	1 cut(s)	414
Hpy188III	TCNNGA	2 cut(s)	99, 111
Hpy8I	GTNNAC	1 cut(s)	568
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	383, 420
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	2 cut(s)	36, 251
HpyF10VI	GCNNNNNNNGC	4 cut(s)	90, 186, 248, 477
HpyF3I	CTNAG	4 cut(s)	6, 143, 210, 413
HpySE526I	ACGT	1 cut(s)	570
LmnI	GCTCC	3 cut(s)	220, 289, 474
LpnPI	CCDG	8 cut(s)	94, 167, 247, 278, 295, 300, 500, 525
LweI	GCATC	3 cut(s)	45, 447, 535
MaeI	CTAG	3 cut(s)	305, 495, 513
MaeII	ACGT	1 cut(s)	570
MbiI	CCGCTC	1 cut(s)	477
MboII	GAAGA	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	90
MlyI	GAGTC	2 cut(s)	43, 511
MnlI	CCTC	8 cut(s)	23, 41, 68, 71, 80, 205, 349, 444
MseI	TTAA	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	4 cut(s)	154, 282, 287, 487
MvnI	CGCG	1 cut(s)	434
MwoI	GCNNNNNNNGC	4 cut(s)	90, 186, 248, 477
NlaIV	GGNNCC	3 cut(s)	79, 216, 298
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PflFI	GACNNNGTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	467
PkrI	GCNGC	2 cut(s)	182, 479
PleI	GAGTC	2 cut(s)	43, 511
PpsI	GAGTC	2 cut(s)	43, 511
PshAI	GACNNNNGTC	1 cut(s)	106
PspFI	CCCAGC	1 cut(s)	292
PspN4I	GGNNCC	3 cut(s)	79, 216, 298
PspPI	GGNCC	1 cut(s)	284
PsyI	GACNNNGTC	1 cut(s)	173
Rsr2I	CGGWCCG	1 cut(s)	284
RsrII	CGGWCCG	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	2 cut(s)	181, 478
Sau96I	GGNCC	1 cut(s)	284
SchI	GAGTC	2 cut(s)	43, 511
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	4 cut(s)	294, 306, 528, 573
SfaNI	GCATC	3 cut(s)	45, 447, 535
SinI	GGWCC	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
SsiI	CCGC	6 cut(s)	91, 180, 434, 444, 471, 477
SspMI	CTAG	3 cut(s)	305, 495, 513
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	573
TauI	GCSGC	2 cut(s)	183, 480
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	2 cut(s)	258, 544
TspRI	CASTG	2 cut(s)	258, 544
Tth111I	GACNNNGTC	1 cut(s)	173
Van91I	CCANNNNNTGG	1 cut(s)	467
VpaK11BI	GGWCC	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	567
XspI	CTAG	3 cut(s)	305, 495, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.