Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009544

Physical Location & Seq

Genomic Coordinates Forward (+)

21714417 .. 21715109

Gene Structure 693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0234900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAGCGTTGGGCAGGCTGGGGGACTGGGTTTATTCTGGAATGATGACGTTAAGATCAAGATACGGCAGCCTTCTACGGCCCGTTTTATCGATGCAGTGGTTGATGAAGGAGACGGCTTCTTGCGGTGGCGTTTCATGGGATTTTACGGCAATCCAGGTGCAGCTGATCGTCATGAATCCTGGGCTCTTCTCCGGACTTTGAGTGATGATGATAGTTTACCTTGGGTTGTGCTGGGAGATTTTAATGAGATCTTGTTGGCTTCGGAGAAGCTGGATGGCAGACCACGATCAGAAAGTCAAATGCGAGGTTTCCGAGAGGCGTTGGGTTATGCGGAACTGGTGGACCTTGGGTATTATGGATGCCCGTTTACTTGGAGTGATTCGGAGACGAAGGTTAGGTTGGATAGGGTGGTTGCTACGGCTGAGTGGTCAGATAGTTTCGGCCATTCCCGGGTGGTCCATTTGCCGCCTAGCAAGTCAGATCATATTCCGATTTTGCTTTGTATCAGTGCGGTTCCGGTTGTTCCGCAGAAGAGATATCACAGGTTTAAGTTTGAATCGATGTGGTTGAAGTATGAGGATTGCCATCAGATTGTTCAGCAGCAGTGGCAACGCCCTGTTCTAGGGCTACCAATGTTTATGGTGTCCAAGAAGATTGCTAGAACCAGTATGTTTCTCGGAGCTAGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

230

Amino Acids

26.26

Weight (kDa)

7.01

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	6 - 162	3.6e-09	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02010
malus_domestica	MD09G1283200.v1.1 MD17G1274000.v1.1
prunus_persica	Prupe.3G011000_v2.0.a1 Prupe.3G011000_v2.0.a1 Prupe.3G011000_v2.0.a1
pyrus_communis	pycom09g19120 pycom17g27200
rosa_chinensis	RchiOBHm_Chr3g0487601
rosa_laevigata	RLG00000022997
rosa_multiflora	Rmu_sc0005285.1_g000001 Rmu_sc0012412.1_g000008
rosa_roxburghii	Rroxscaffold_6G00394660
rosa_rugosa	Rorug03G0234600 Rorug03G0234700 Rorug03G0234800 Rorug03G0234900
rosa_samantha	Rh3AG283200 Rh3BG318900 Rh3CG317000 Rh3DG315200
rosa_wichuraiana	Rw3G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	192
AciI	CCGC	5 cut(s)	124, 332, 467, 512, 527
AcoI	YGGCCR	1 cut(s)	442
AfiI	CCNNNNNNNGG	2 cut(s)	451, 623
AgsI	TTSAA	2 cut(s)	557, 571
AjnI	CCWGG	2 cut(s)	154, 179
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AluBI	AGCT	3 cut(s)	164, 271, 683
AluI	AGCT	3 cut(s)	164, 271, 683
Alw26I	GTCTC	2 cut(s)	105, 380
Ama87I	CYCGRG	1 cut(s)	450
Aor13HI	TCCGGA	1 cut(s)	192
AoxI	GGCC	2 cut(s)	78, 442
ApeKI	GCWGC	3 cut(s)	67, 161, 601
AspS9I	GGNCC	3 cut(s)	79, 343, 457
AsuC2I	CCSGG	2 cut(s)	451, 452
AvaI	CYCGRG	1 cut(s)	450
AvaII	GGWCC	2 cut(s)	343, 457
BanII	GRGCYC	1 cut(s)	187
BbvI	GCAGC	3 cut(s)	79, 173, 613
BccI	CCATC	2 cut(s)	269, 594
BceAI	ACGGC	5 cut(s)	80, 93, 130, 163, 435
BciT130I	CCWGG	2 cut(s)	156, 181
BcnI	CCSGG	2 cut(s)	451, 452
BcoDI	GTCTC	2 cut(s)	105, 380
BfaI	CTAG	4 cut(s)	471, 623, 660, 684
BglII	AGATCT	1 cut(s)	249
BisI	GCNGC	4 cut(s)	68, 162, 467, 602
BlsI	GCNGC	4 cut(s)	69, 163, 468, 603
Bme1390I	CCNGG	4 cut(s)	156, 181, 451, 452
Bme18I	GGWCC	2 cut(s)	343, 457
BmeT110I	CYCGRG	1 cut(s)	450
BmgT120I	GGNCC	3 cut(s)	79, 343, 457
BmiI	GGNNCC	1 cut(s)	516
BmrFI	CCNGG	4 cut(s)	156, 181, 451, 452
BmrI	ACTGGG	1 cut(s)	35
BmsI	GCATC	2 cut(s)	82, 350
BmuI	ACTGGG	1 cut(s)	35
BpuMI	CCSGG	2 cut(s)	451, 452
Bsa29I	ATCGAT	2 cut(s)	90, 560
BsaBI	GATNNNNATC	1 cut(s)	585
BsaJI	CCNNGG	4 cut(s)	180, 221, 346, 450
BsaWI	WCCGGW	2 cut(s)	192, 517
BsaXI	ACNNNNNCTCC	1 cut(s)	672
Bsc4I	CCNNNNNNNGG	2 cut(s)	451, 623
Bse1I	ACTGG	3 cut(s)	30, 342, 666
Bse8I	GATNNNNATC	1 cut(s)	585
BseAI	TCCGGA	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	156, 181
BseCI	ATCGAT	2 cut(s)	90, 560
BseDI	CCNNGG	4 cut(s)	180, 221, 346, 450
BseGI	GGATG	2 cut(s)	280, 365
BseJI	GATNNNNATC	1 cut(s)	585
BseLI	CCNNNNNNNGG	2 cut(s)	451, 623
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	3 cut(s)	30, 342, 666
BseXI	GCAGC	3 cut(s)	79, 173, 613
BseYI	CCCAGC	2 cut(s)	17, 232
BsgI	GTGCAG	1 cut(s)	180
BshFI	GGCC	2 cut(s)	80, 444
BshVI	ATCGAT	2 cut(s)	90, 560
BsiHKCI	CYCGRG	1 cut(s)	450
BsiSI	CCGG	3 cut(s)	193, 451, 518
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	451, 623
BsmAI	GTCTC	2 cut(s)	105, 380
BsmBI	CGTCTC	2 cut(s)	105, 380
BsmFI	GGGAC	1 cut(s)	36
BsnI	GGCC	2 cut(s)	80, 444
BsoBI	CYCGRG	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp13I	TCCGGA	1 cut(s)	192
Bsp143I	GATC	5 cut(s)	54, 166, 249, 287, 481
BspACI	CCGC	5 cut(s)	124, 332, 467, 512, 527
BspANI	GGCC	2 cut(s)	80, 444
BspCNI	CTCAG	1 cut(s)	415
BspDI	ATCGAT	2 cut(s)	90, 560
BspEI	TCCGGA	1 cut(s)	192
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	516
BspQI	GCTCTTC	1 cut(s)	192
BsrI	ACTGG	3 cut(s)	30, 342, 666
BssECI	CCNNGG	4 cut(s)	180, 221, 346, 450
BssMI	GATC	5 cut(s)	54, 166, 249, 287, 481
BssT1I	CCWWGG	2 cut(s)	221, 346
Bst2UI	CCWGG	2 cut(s)	156, 181
Bst6I	CTCTTC	2 cut(s)	192, 527
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	423
BstENI	CCTNNNNNAGG	1 cut(s)	621
BstF5I	GGATG	2 cut(s)	280, 365
BstKTI	GATC	5 cut(s)	57, 169, 252, 290, 484
BstMAI	GTCTC	2 cut(s)	105, 380
BstMBI	GATC	5 cut(s)	54, 166, 249, 287, 481
BstMWI	GCNNNNNNNGC	1 cut(s)	607
BstNI	CCWGG	2 cut(s)	156, 181
BstSCI	CCNGG	4 cut(s)	154, 179, 449, 450
BstV1I	GCAGC	3 cut(s)	79, 173, 613
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
Bsu15I	ATCGAT	2 cut(s)	90, 560
BsuRI	GGCC	2 cut(s)	80, 444
BsuTUI	ATCGAT	2 cut(s)	90, 560
BtsCI	GGATG	2 cut(s)	280, 365
BtsI	GCAGTG	2 cut(s)	102, 611
BtsIMutI	CAGTG	3 cut(s)	102, 514, 611
Cac8I	GCNNGC	1 cut(s)	15
CciI	TCATGA	1 cut(s)	172
Cfr13I	GGNCC	3 cut(s)	79, 343, 457
Cfr9I	CCCGGG	1 cut(s)	450
ClaI	ATCGAT	2 cut(s)	90, 560
CviAII	CATG	2 cut(s)	136, 173
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	5 cut(s)	56, 168, 251, 289, 483
DpnII	GATC	5 cut(s)	54, 166, 249, 287, 481
EaeI	YGGCCR	1 cut(s)	442
Eam1104I	CTCTTC	2 cut(s)	192, 527
EarI	CTCTTC	2 cut(s)	192, 527
Eco130I	CCWWGG	2 cut(s)	221, 346
Eco24I	GRGCYC	1 cut(s)	187
Eco32I	GATATC	1 cut(s)	539
Eco47I	GGWCC	2 cut(s)	343, 457
Eco88I	CYCGRG	1 cut(s)	450
EcoNI	CCTNNNNNAGG	1 cut(s)	621
EcoRII	CCWGG	2 cut(s)	154, 179
EcoRV	GATATC	1 cut(s)	539
EcoT14I	CCWWGG	2 cut(s)	221, 346
EcoT38I	GRGCYC	1 cut(s)	187
ErhI	CCWWGG	2 cut(s)	221, 346
Esp3I	CGTCTC	2 cut(s)	105, 380
FaeI	CATG	2 cut(s)	139, 176
FaiI	YATR	8 cut(s)	137, 174, 330, 357, 486, 576, 641, 671
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	2 cut(s)	135, 172
Fnu4HI	GCNGC	4 cut(s)	68, 162, 467, 602
FokI	GGATG	2 cut(s)	287, 372
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	4 cut(s)	68, 162, 467, 602
FspBI	CTAG	4 cut(s)	471, 623, 660, 684
GluI	GCNGC	4 cut(s)	68, 162, 467, 602
GsaI	CCCAGC	2 cut(s)	21, 236
HaeIII	GGCC	2 cut(s)	80, 444
HapII	CCGG	3 cut(s)	193, 451, 518
Hin1II	CATG	2 cut(s)	139, 176
HinfI	GANTC	3 cut(s)	176, 380, 557
HpaII	CCGG	3 cut(s)	193, 451, 518
Hpy166II	GTNNAC	3 cut(s)	218, 343, 369
Hpy188I	TCNGA	9 cut(s)	265, 292, 314, 385, 433, 481, 492, 591, 680
Hpy188III	TCNNGA	4 cut(s)	37, 58, 173, 193
Hpy8I	GTNNAC	3 cut(s)	218, 343, 369
HpyAV	CCTTC	3 cut(s)	81, 101, 385
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	2 cut(s)	95, 161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	607
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	139, 176
Kpn2I	TCCGGA	1 cut(s)	192
Kzo9I	GATC	5 cut(s)	54, 166, 249, 287, 481
LguI	GCTCTTC	1 cut(s)	192
LmnI	GCTCC	1 cut(s)	680
Lsp1109I	GCAGC	3 cut(s)	79, 173, 613
LweI	GCATC	2 cut(s)	82, 350
MaeI	CTAG	4 cut(s)	471, 623, 660, 684
MaeII	ACGT	1 cut(s)	48
MalI	GATC	5 cut(s)	56, 168, 251, 289, 483
MboI	GATC	5 cut(s)	54, 166, 249, 287, 481
MboII	GAAGA	3 cut(s)	179, 544, 664
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	187
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	3 cut(s)	299, 310, 571
MroI	TCCGGA	1 cut(s)	192
MseI	TTAA	3 cut(s)	51, 243, 549
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	3 cut(s)	193, 451, 518
MspR9I	CCNGG	4 cut(s)	156, 181, 451, 452
MvaI	CCWGG	2 cut(s)	156, 181
MwoI	GCNNNNNNNGC	1 cut(s)	607
NciI	CCSGG	2 cut(s)	451, 452
NdeII	GATC	5 cut(s)	54, 166, 249, 287, 481
NlaIII	CATG	2 cut(s)	139, 176
NlaIV	GGNNCC	1 cut(s)	516
PagI	TCATGA	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	192
PfeI	GAWTC	3 cut(s)	176, 380, 557
PkrI	GCNGC	4 cut(s)	69, 163, 468, 603
Psp6I	CCWGG	2 cut(s)	154, 179
PspFI	CCCAGC	2 cut(s)	17, 232
PspGI	CCWGG	2 cut(s)	154, 179
PspN4I	GGNNCC	1 cut(s)	516
PspPI	GGNCC	3 cut(s)	79, 343, 457
PsuI	RGATCY	1 cut(s)	249
PvuII	CAGCTG	1 cut(s)	164
SapI	GCTCTTC	1 cut(s)	192
SaqAI	TTAA	3 cut(s)	51, 243, 549
SatI	GCNGC	4 cut(s)	68, 162, 467, 602
Sau3AI	GATC	5 cut(s)	54, 166, 249, 287, 481
Sau96I	GGNCC	3 cut(s)	79, 343, 457
ScrFI	CCNGG	4 cut(s)	156, 181, 451, 452
SduI	GDGCHC	1 cut(s)	187
SfaNI	GCATC	2 cut(s)	82, 350
SinI	GGWCC	2 cut(s)	343, 457
SmaI	CCCGGG	1 cut(s)	452
SsiI	CCGC	5 cut(s)	124, 332, 467, 512, 527
SspMI	CTAG	4 cut(s)	471, 623, 660, 684
StyD4I	CCNGG	4 cut(s)	154, 179, 449, 450
StyI	CCWWGG	2 cut(s)	221, 346
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	2 cut(s)	90, 560
TauI	GCSGC	1 cut(s)	469
TfiI	GAWTC	3 cut(s)	176, 380, 557
Tru1I	TTAA	3 cut(s)	51, 243, 549
Tru9I	TTAA	3 cut(s)	51, 243, 549
TscAI	CASTG	3 cut(s)	102, 514, 611
TseI	GCWGC	3 cut(s)	67, 161, 601
TspDTI	ATGAA	3 cut(s)	120, 124, 189
TspMI	CCCGGG	1 cut(s)	450
TspRI	CASTG	3 cut(s)	102, 514, 611
VpaK11BI	GGWCC	2 cut(s)	343, 457
XagI	CCTNNNNNAGG	1 cut(s)	621
XmaI	CCCGGG	1 cut(s)	450
XspI	CTAG	4 cut(s)	471, 623, 660, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.