Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009544

Physical Location & Seq

Genomic Coordinates Forward (+)

21698591 .. 21699442

Gene Structure 852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0234700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGACCAAAAAGTCCAAAACCCTCCCACTACTCGATTCTACTTCCCTCATTTCCCTCACCATTTGCTTCTTCACAATCCATGCCACCGAAAAATCCTCAATCTTCTCAGAAAACACATCTCCATTGACACTTGGGATCAAGCAAGAGAAGCTAAGCCACCTCCACTTCTACTTCCACGATATCGCCAGCGGTCCCAACCCAACTTCCATCTGGGTTGCCCGAGCACCCACGTCTAGCAAATCTCCGACGCTGTTTGGCTCTGTAGCTATGATCGATGATGCGTTAACTATCGGCCCCAAAAGGAGCTCCAAAGTTGTGGGAAGGGCACAAGGGTTTTATGCATCTGCCTCACAAAGTGAAAATGCTTTGATGGTGACCATGAACTTGGCTTTCACCGAAGGGAAGTTTAATGGCAGCAGTCTTACTGTTGTGGGACGAAACCCTGTGGTTGAAGCTGTAAGAGAGATGCCTATAATCGGTGGAAGTGGAGTTTTTCGGTTTTCTAGGGGATATGTTCAGGTCAAGACTCTCAGGTTCAATGCAACAACCGGAGATGCTGTTGTTGAATATAATGTGTTTGTGTTCCATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

197

Amino Acids

21.42

Weight (kDa)

9.55

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	52 - 195	8.4e-58	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02010
malus_domestica	MD09G1283200.v1.1 MD17G1274000.v1.1
prunus_persica	Prupe.3G011000_v2.0.a1 Prupe.3G011000_v2.0.a1 Prupe.3G011000_v2.0.a1
pyrus_communis	pycom09g19120 pycom17g27200
rosa_chinensis	RchiOBHm_Chr3g0487601
rosa_laevigata	RLG00000022997
rosa_multiflora	Rmu_sc0005285.1_g000001 Rmu_sc0012412.1_g000008
rosa_roxburghii	Rroxscaffold_6G00394660
rosa_rugosa	Rorug03G0234600 Rorug03G0234700 Rorug03G0234800 Rorug03G0234900
rosa_samantha	Rh3AG283200 Rh3BG318900 Rh3CG317000 Rh3DG315200
rosa_wichuraiana	Rw3G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
AciI	CCGC	1 cut(s)	189
AclWI	GGATC	1 cut(s)	143
AdeI	CACNNNGTG	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	476
AgsI	TTSAA	3 cut(s)	452, 538, 566
AjiI	CACGTC	1 cut(s)	231
AluBI	AGCT	4 cut(s)	151, 266, 306, 455
AluI	AGCT	4 cut(s)	151, 266, 306, 455
Alw21I	GWGCWC	2 cut(s)	226, 308
AlwI	GGATC	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	1 cut(s)	414
AspS9I	GGNCC	2 cut(s)	191, 293
AsuHPI	GGTGA	3 cut(s)	49, 385, 385
AvaI	CYCGRG	1 cut(s)	219
AvaII	GGWCC	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	308
Bbv12I	GWGCWC	2 cut(s)	226, 308
BbvI	GCAGC	1 cut(s)	426
BccI	CCATC	2 cut(s)	215, 364
BfaI	CTAG	2 cut(s)	234, 504
BfmI	CTRYAG	1 cut(s)	261
BisI	GCNGC	1 cut(s)	415
BlpI	GCTNAGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	416
Bme18I	GGWCC	1 cut(s)	191
BmeT110I	CYCGRG	1 cut(s)	219
BmgBI	CACGTC	1 cut(s)	231
BmgT120I	GGNCC	2 cut(s)	191, 293
BmiI	GGNNCC	2 cut(s)	193, 295
BmsI	GCATC	4 cut(s)	268, 350, 456, 544
Bpu1102I	GCTNAGC	1 cut(s)	152
Bsa29I	ATCGAT	1 cut(s)	273
BsaWI	WCCGGW	1 cut(s)	548
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
BseCI	ATCGAT	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseMII	CTCAG	2 cut(s)	120, 544
BseSI	GKGCMC	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	426
BshFI	GGCC	1 cut(s)	294
BshVI	ATCGAT	1 cut(s)	273
BsiHKAI	GWGCWC	2 cut(s)	226, 308
BsiHKCI	CYCGRG	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	549
BslFI	GGGAC	2 cut(s)	177, 447
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmFI	GGGAC	2 cut(s)	177, 447
BsnI	GGCC	1 cut(s)	294
BsoBI	CYCGRG	1 cut(s)	219
Bsp1286I	GDGCHC	3 cut(s)	226, 308, 328
Bsp143I	GATC	2 cut(s)	135, 270
Bsp1720I	GCTNAGC	1 cut(s)	152
BspACI	CCGC	1 cut(s)	189
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	2 cut(s)	119, 543
BspDI	ATCGAT	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	193, 295
BspPI	GGATC	1 cut(s)	143
BssMI	GATC	2 cut(s)	135, 270
Bst4CI	ACNGT	1 cut(s)	427
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	3 cut(s)	106, 152, 530
BstEII	GGTNACC	1 cut(s)	373
BstKTI	GATC	2 cut(s)	138, 273
BstMBI	GATC	2 cut(s)	135, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	148
BstPI	GGTNACC	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	328
BstV1I	GCAGC	1 cut(s)	426
BstXI	CCANNNNNNTGG	2 cut(s)	316, 385
Bsu15I	ATCGAT	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	273
BtrI	CACGTC	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	187
Cfr13I	GGNCC	2 cut(s)	191, 293
ClaI	ATCGAT	1 cut(s)	273
CseI	GACGC	1 cut(s)	256
CviAII	CATG	2 cut(s)	80, 379
CviJI	RGCY	8 cut(s)	151, 156, 258, 266, 294, 306, 389, 455
CviKI_1	RGCY	8 cut(s)	151, 156, 258, 266, 294, 306, 389, 455
DdeI	CTNAG	3 cut(s)	106, 152, 530
DpnI	GATC	2 cut(s)	137, 272
DpnII	GATC	2 cut(s)	135, 270
DraIII	CACNNNGTG	1 cut(s)	356
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Ecl136II	GAGCTC	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	308
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	306
Eco88I	CYCGRG	1 cut(s)	219
Eco91I	GGTNACC	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	306
EcoO65I	GGTNACC	1 cut(s)	373
EcoRV	GATATC	1 cut(s)	181
EcoT22I	ATGCAT	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	308
FaeI	CATG	2 cut(s)	83, 382
FaiI	YATR	7 cut(s)	81, 269, 339, 380, 473, 513, 570
FaqI	GGGAC	2 cut(s)	177, 447
FatI	CATG	2 cut(s)	79, 378
Fnu4HI	GCNGC	1 cut(s)	415
FriOI	GRGCYC	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	415
FspBI	CTAG	2 cut(s)	234, 504
GluI	GCNGC	1 cut(s)	415
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	1 cut(s)	549
HgaI	GACGC	1 cut(s)	256
Hin1II	CATG	2 cut(s)	83, 382
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HinfI	GANTC	2 cut(s)	35, 526
HpaI	GTTAAC	1 cut(s)	285
HpaII	CCGG	1 cut(s)	549
HphI	GGTGA	3 cut(s)	49, 385, 385
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	2 cut(s)	109, 246
Hpy188III	TCNNGA	1 cut(s)	523
Hpy8I	GTNNAC	1 cut(s)	285
Hpy99I	CGWCG	1 cut(s)	250
HpyAV	CCTTC	2 cut(s)	315, 392
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	2 cut(s)	341, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	148
HpyF3I	CTNAG	3 cut(s)	106, 152, 530
HpySE526I	ACGT	1 cut(s)	230
Hsp92II	CATG	2 cut(s)	83, 382
KspAI	GTTAAC	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	135, 270
LmnI	GCTCC	2 cut(s)	303, 311
LpnPI	CCDG	6 cut(s)	196, 199, 456, 503, 517, 562
Lsp1109I	GCAGC	1 cut(s)	426
LweI	GCATC	4 cut(s)	268, 350, 456, 544
MaeI	CTAG	2 cut(s)	234, 504
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	2 cut(s)	137, 272
MboI	GATC	2 cut(s)	135, 270
MboII	GAAGA	2 cut(s)	61, 94
MhlI	GDGCHC	3 cut(s)	226, 308, 328
MlyI	GAGTC	1 cut(s)	520
MmeI	TCCRAC	1 cut(s)	269
MnlI	CCTC	6 cut(s)	32, 56, 65, 106, 170, 358
Mph1103I	ATGCAT	1 cut(s)	343
MseI	TTAA	2 cut(s)	284, 408
MspA1I	CMGCKG	1 cut(s)	189
MspI	CCGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	1 cut(s)	148
NdeII	GATC	2 cut(s)	135, 270
NlaIII	CATG	2 cut(s)	83, 382
NlaIV	GGNNCC	2 cut(s)	193, 295
NmuCI	GTSAC	1 cut(s)	373
NsiI	ATGCAT	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	416
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
Psp124BI	GAGCTC	1 cut(s)	308
PspEI	GGTNACC	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	193, 295
PspPI	GGNCC	2 cut(s)	191, 293
SacI	GAGCTC	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	284, 408
SatI	GCNGC	1 cut(s)	415
Sau3AI	GATC	2 cut(s)	135, 270
Sau96I	GGNCC	2 cut(s)	191, 293
SchI	GAGTC	1 cut(s)	520
SduI	GDGCHC	3 cut(s)	226, 308, 328
SetI	ASST	8 cut(s)	153, 162, 233, 268, 308, 457, 522, 536
SfaNI	GCATC	4 cut(s)	268, 350, 456, 544
SfcI	CTRYAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	191
SsiI	CCGC	1 cut(s)	189
SspMI	CTAG	2 cut(s)	234, 504
SstI	GAGCTC	1 cut(s)	308
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	2 cut(s)	33, 273
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	2 cut(s)	284, 408
Tru9I	TTAA	2 cut(s)	284, 408
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	1 cut(s)	414
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	207
XspI	CTAG	2 cut(s)	234, 504
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.