Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009544

Physical Location & Seq

Genomic Coordinates Reverse (-)

21699598 .. 21700662

Gene Structure 1065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0234800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGATGTCTTGCAACGAAAGAAATAAAAGGAGATTAGAACTTCCCTTTGATTCCATTGTTGAGATTTTGAGTTGGCTGCCAGTCAAGTCTTTGCTAAGGTTCAAGTGCGTGTGCAAGCGATGGTGTTCCTTGATTCAAGATTACAATTTCATTCTCAAAAATATGGATCGGACAAGTACAATGCTGCTCTTTTATCCTTGCAAATCCCATGATGAAAATTTTGAGTTTGTTTCAAGTTGTGCAGGCTTGTGTATGGAGAAGAGTGCTAGTAAGAGTGCTAGTAATTCGACAGTTTTTCGTATCAGAAACCCCGCGACTCACCAAGTGCTTTACTTGCCCGATCCACCTCCATATACTTCATCAGTAGACTTTGCTTTTAACTCATTCACTGGTGAGTGTAAAGTTCTATGTTTTTATTGGGAAAAGCTATATTTAAATGTCCCCGCTGCATTTGGATTCAAAGTTATAACCATTGGAAAAGATGAGCAGTGGAGACCCTTAGAGCTCCCCGACCAAAATAAGCTACGCAAAAAAAGGGTGTTTAGAGGATGTTACTCTAAGGTTGAAGGGGTTTGTCATTTGCTTCAAATTATTAGGTTTACTGAAGAAGAAGAAGATATGTACCTAGAAGTTCAATCTTTAGATCTATGGAGTGAACATTTTACAACGAATACTCTTCCCCAGGGAGTTTCCTTAGACTGGAATCAAGTTAGTGTTGTTCGTTGGAATAACTGCTTATCAGTCGGTTATATGAAAGAGGAATCCCTTGACCTCTTGGTGTTACAAGACTATAAGGAGCGAAAATGGAGTCCAAACATGATCATCATTCCCGTCAAAGGGCCAAAAAAGAACGACGGTCGTCCAAAATTTGCGAAGGAAATAACAAAAATTCCTTCTACCGAATTTGATTTGCATATCAATGATGAAGGGGACTATAGACTTTCATCTGTCAGGAAAGAGGAGATGAGAGAGACTGGGGAGATATTACATAAGCCAAGCCTGATAAGTTTTAAGGGAATAATGATGCCAGAAAATGGTTATTACCCTAAGAATGAAGGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

354

Amino Acids

41.34

Weight (kDa)

8.16

Isoelectric Point (pI)

53.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	12 - 51	4.8e-11	F-box domain
F-box-like	PF12937	13 - 47	6.5e-08	F-box-like
FBA_3	PF08268	68 - 279	1.3e-13	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02010
malus_domestica	MD09G1283200.v1.1 MD17G1274000.v1.1
prunus_persica	Prupe.3G011000_v2.0.a1 Prupe.3G011000_v2.0.a1 Prupe.3G011000_v2.0.a1
pyrus_communis	pycom09g19120 pycom17g27200
rosa_chinensis	RchiOBHm_Chr3g0487601
rosa_laevigata	RLG00000022997
rosa_multiflora	Rmu_sc0005285.1_g000001 Rmu_sc0012412.1_g000008
rosa_roxburghii	Rroxscaffold_6G00394660
rosa_rugosa	Rorug03G0234600 Rorug03G0234700 Rorug03G0234800 Rorug03G0234900
rosa_samantha	Rh3AG283200 Rh3BG318900 Rh3CG317000 Rh3DG315200
rosa_wichuraiana	Rw3G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	467
AccB7I	CCANNNNNTGG	1 cut(s)	1034
AccI	GTMKAC	1 cut(s)	366
AccII	CGCG	1 cut(s)	314
AciI	CCGC	2 cut(s)	312, 444
AclWI	GGATC	2 cut(s)	174, 335
AcsI	RAATTY	4 cut(s)	217, 866, 888, 902
AcuI	CTGAAG	1 cut(s)	624
AdeI	CACNNNGTG	1 cut(s)	325
AfaI	GTAC	2 cut(s)	178, 623
AfiI	CCNNNNNNNGG	4 cut(s)	699, 836, 837, 1034
AgsI	TTSAA	7 cut(s)	103, 137, 234, 460, 566, 587, 635
AjnI	CCWGG	1 cut(s)	681
AluBI	AGCT	3 cut(s)	427, 505, 523
AluI	AGCT	3 cut(s)	427, 505, 523
Alw21I	GWGCWC	1 cut(s)	507
Alw26I	GTCTC	2 cut(s)	487, 965
AlwI	GGATC	2 cut(s)	174, 335
AoxI	GGCC	1 cut(s)	839
ApeKI	GCWGC	3 cut(s)	76, 184, 446
ApoI	RAATTY	4 cut(s)	217, 866, 888, 902
ArsI	GACNNNNNNTTYG	2 cut(s)	793, 825
AspS9I	GGNCC	1 cut(s)	839
AsuHPI	GGTGA	2 cut(s)	311, 404
BanII	GRGCYC	1 cut(s)	507
Bbv12I	GWGCWC	1 cut(s)	507
BbvI	GCAGC	3 cut(s)	63, 171, 433
BccI	CCATC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	683
BclI	TGATCA	1 cut(s)	819
BcoDI	GTCTC	2 cut(s)	487, 965
BfaI	CTAG	3 cut(s)	267, 279, 626
BfmI	CTRYAG	1 cut(s)	934
BglII	AGATCT	1 cut(s)	643
BisI	GCNGC	3 cut(s)	77, 185, 447
BlsI	GCNGC	3 cut(s)	78, 186, 448
Bme1390I	CCNGG	1 cut(s)	683
BmgT120I	GGNCC	1 cut(s)	839
BmrFI	CCNGG	1 cut(s)	683
BmrI	ACTGGG	1 cut(s)	984
BmsI	GCATC	1 cut(s)	1014
BmuI	ACTGGG	1 cut(s)	984
BoxI	GACNNNNGTC	1 cut(s)	858
Bpu10I	CCTNAGC	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	487
BsaJI	CCNNGG	2 cut(s)	681, 682
Bsc4I	CCNNNNNNNGG	4 cut(s)	699, 836, 837, 1034
Bse1I	ACTGG	4 cut(s)	80, 394, 704, 979
BseBI	CCWGG	1 cut(s)	683
BseDI	CCNNGG	2 cut(s)	681, 682
BseGI	GGATG	1 cut(s)	554
BseLI	CCNNNNNNNGG	4 cut(s)	699, 836, 837, 1034
BseNI	ACTGG	4 cut(s)	80, 394, 704, 979
BseRI	GAGGAG	1 cut(s)	974
BseXI	GCAGC	3 cut(s)	63, 171, 433
BsgI	GTGCAG	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	314
Bsh1285I	CGRYCG	1 cut(s)	859
BshFI	GGCC	1 cut(s)	841
BsiEI	CGRYCG	1 cut(s)	859
BsiHKAI	GWGCWC	1 cut(s)	507
BslFI	GGGAC	2 cut(s)	425, 944
BslI	CCNNNNNNNGG	4 cut(s)	699, 836, 837, 1034
BsmAI	GTCTC	2 cut(s)	487, 965
BsmFI	GGGAC	2 cut(s)	425, 944
BsnI	GGCC	1 cut(s)	841
Bso31I	GGTCTC	1 cut(s)	487
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	4 cut(s)	166, 340, 643, 819
BspACI	CCGC	2 cut(s)	312, 444
BspANI	GGCC	1 cut(s)	841
BspFNI	CGCG	1 cut(s)	314
BspPI	GGATC	2 cut(s)	174, 335
BspTNI	GGTCTC	1 cut(s)	487
BsrI	ACTGG	4 cut(s)	80, 394, 704, 979
BssECI	CCNNGG	2 cut(s)	681, 682
BssMI	GATC	4 cut(s)	166, 340, 643, 819
Bst2UI	CCWGG	1 cut(s)	683
Bst4CI	ACNGT	2 cut(s)	292, 857
Bst6I	CTCTTC	2 cut(s)	254, 681
BstC8I	GCNNGC	2 cut(s)	116, 244
BstDEI	CTNAG	5 cut(s)	95, 499, 558, 694, 1047
BstF5I	GGATG	1 cut(s)	554
BstFNI	CGCG	1 cut(s)	314
BstKTI	GATC	4 cut(s)	169, 343, 646, 822
BstMAI	GTCTC	2 cut(s)	487, 965
BstMBI	GATC	4 cut(s)	166, 340, 643, 819
BstMCI	CGRYCG	1 cut(s)	859
BstMWI	GCNNNNNNNGC	1 cut(s)	334
BstNI	CCWGG	1 cut(s)	683
BstPAI	GACNNNNGTC	1 cut(s)	858
BstSCI	CCNGG	1 cut(s)	681
BstSFI	CTRYAG	1 cut(s)	934
BstUI	CGCG	1 cut(s)	314
BstV1I	GCAGC	3 cut(s)	63, 171, 433
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
BsuRI	GGCC	1 cut(s)	841
BtgZI	GCGATG	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	554
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	2 cut(s)	387, 494
Cac8I	GCNNGC	2 cut(s)	116, 244
Cfr13I	GGNCC	1 cut(s)	839
Csp6I	GTAC	2 cut(s)	177, 622
CviAII	CATG	2 cut(s)	209, 817
CviJI	RGCY	8 cut(s)	76, 246, 427, 505, 523, 841, 994, 999
CviKI_1	RGCY	8 cut(s)	76, 246, 427, 505, 523, 841, 994, 999
CviQI	GTAC	2 cut(s)	177, 622
DdeI	CTNAG	5 cut(s)	95, 499, 558, 694, 1047
DpnI	GATC	4 cut(s)	168, 342, 645, 821
DpnII	GATC	4 cut(s)	166, 340, 643, 819
DraI	TTTAAA	1 cut(s)	435
DraIII	CACNNNGTG	1 cut(s)	325
Eam1104I	CTCTTC	2 cut(s)	254, 681
EarI	CTCTTC	2 cut(s)	254, 681
Ecl136II	GAGCTC	1 cut(s)	505
Eco24I	GRGCYC	1 cut(s)	507
Eco31I	GGTCTC	1 cut(s)	487
Eco53kI	GAGCTC	1 cut(s)	505
Eco57I	CTGAAG	1 cut(s)	624
EcoICRI	GAGCTC	1 cut(s)	505
EcoRII	CCWGG	1 cut(s)	681
EcoT38I	GRGCYC	1 cut(s)	507
FaeI	CATG	2 cut(s)	212, 820
FaqI	GGGAC	2 cut(s)	425, 944
FatI	CATG	2 cut(s)	208, 816
FauI	CCCGC	2 cut(s)	319, 451
FbaI	TGATCA	1 cut(s)	819
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	3 cut(s)	77, 185, 447
FokI	GGATG	1 cut(s)	561
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	3 cut(s)	77, 185, 447
FspBI	CTAG	3 cut(s)	267, 279, 626
GluI	GCNGC	3 cut(s)	77, 185, 447
HaeIII	GGCC	1 cut(s)	841
Hin1II	CATG	2 cut(s)	212, 820
HinfI	GANTC	7 cut(s)	50, 133, 316, 456, 703, 761, 808
HphI	GGTGA	2 cut(s)	311, 404
Hpy166II	GTNNAC	3 cut(s)	367, 600, 656
Hpy188I	TCNGA	2 cut(s)	171, 305
Hpy188III	TCNNGA	2 cut(s)	137, 952
Hpy8I	GTNNAC	3 cut(s)	367, 600, 656
Hpy99I	CGWCG	1 cut(s)	857
HpyAV	CCTTC	5 cut(s)	560, 868, 903, 920, 1049
HpyCH4III	ACNGT	2 cut(s)	292, 857
HpyCH4V	TGCA	6 cut(s)	12, 114, 201, 242, 449, 913
HpyF10VI	GCNNNNNNNGC	1 cut(s)	334
HpyF3I	CTNAG	5 cut(s)	95, 499, 558, 694, 1047
Hsp92II	CATG	2 cut(s)	212, 820
Ksp22I	TGATCA	1 cut(s)	819
Kzo9I	GATC	4 cut(s)	166, 340, 643, 819
LmnI	GCTCC	2 cut(s)	510, 796
Lsp1109I	GCAGC	3 cut(s)	63, 171, 433
LweI	GCATC	1 cut(s)	1014
MaeI	CTAG	3 cut(s)	267, 279, 626
MaeIII	GTNAC	2 cut(s)	551, 780
MalI	GATC	4 cut(s)	168, 342, 645, 821
MboI	GATC	4 cut(s)	166, 340, 643, 819
MboII	GAAGA	6 cut(s)	271, 617, 620, 623, 626, 668
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	1 cut(s)	507
MluCI	AATT	7 cut(s)	145, 217, 283, 588, 866, 888, 902
MlyI	GAGTC	2 cut(s)	310, 817
MmeI	TCCRAC	1 cut(s)	704
MnlI	CCTC	5 cut(s)	357, 539, 751, 782, 952
MseI	TTAA	3 cut(s)	378, 434, 1011
MslI	CAYNNNNRTG	1 cut(s)	918
MspA1I	CMGCKG	1 cut(s)	446
MspR9I	CCNGG	1 cut(s)	683
MvaI	CCWGG	1 cut(s)	683
MvnI	CGCG	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	334
NdeII	GATC	4 cut(s)	166, 340, 643, 819
NlaIII	CATG	2 cut(s)	212, 820
PasI	CCCWGGG	1 cut(s)	682
PfeI	GAWTC	5 cut(s)	50, 133, 456, 703, 761
PflMI	CCANNNNNTGG	1 cut(s)	1034
PkrI	GCNGC	3 cut(s)	78, 186, 448
PleI	GAGTC	2 cut(s)	310, 816
PpsI	GAGTC	2 cut(s)	310, 816
PshAI	GACNNNNGTC	1 cut(s)	858
PsiI	TTATAA	1 cut(s)	467
Psp124BI	GAGCTC	1 cut(s)	507
Psp6I	CCWGG	1 cut(s)	681
PspGI	CCWGG	1 cut(s)	681
PspPI	GGNCC	1 cut(s)	839
PsuI	RGATCY	1 cut(s)	643
RsaI	GTAC	2 cut(s)	178, 623
RsaNI	GTAC	2 cut(s)	177, 622
RseI	CAYNNNNRTG	1 cut(s)	918
SacI	GAGCTC	1 cut(s)	507
SaqAI	TTAA	3 cut(s)	378, 434, 1011
SatI	GCNGC	3 cut(s)	77, 185, 447
Sau3AI	GATC	4 cut(s)	166, 340, 643, 819
Sau96I	GGNCC	1 cut(s)	839
SchI	GAGTC	2 cut(s)	310, 817
ScrFI	CCNGG	1 cut(s)	683
SduI	GDGCHC	1 cut(s)	507
SfaNI	GCATC	1 cut(s)	1014
SfcI	CTRYAG	1 cut(s)	934
SmiI	ATTTAAAT	1 cut(s)	435
SmiMI	CAYNNNNRTG	1 cut(s)	918
Sse9I	AATT	7 cut(s)	145, 217, 283, 588, 866, 888, 902
SsiI	CCGC	2 cut(s)	312, 444
SspMI	CTAG	3 cut(s)	267, 279, 626
SstI	GAGCTC	1 cut(s)	507
StyD4I	CCNGG	1 cut(s)	681
SwaI	ATTTAAAT	1 cut(s)	435
TaaI	ACNGT	2 cut(s)	292, 857
TaqI	TCGA	1 cut(s)	287
TasI	AATT	7 cut(s)	145, 217, 283, 588, 866, 888, 902
TatI	WGTACW	1 cut(s)	176
TfiI	GAWTC	5 cut(s)	50, 133, 456, 703, 761
Tru1I	TTAA	3 cut(s)	378, 434, 1011
Tru9I	TTAA	3 cut(s)	378, 434, 1011
TscAI	CASTG	2 cut(s)	394, 494
TseI	GCWGC	3 cut(s)	76, 184, 446
TspDTI	ATGAA	6 cut(s)	139, 228, 348, 767, 933, 939
TspRI	CASTG	2 cut(s)	394, 494
Van91I	CCANNNNNTGG	1 cut(s)	1034
XapI	RAATTY	4 cut(s)	217, 866, 888, 902
XmiI	GTMKAC	1 cut(s)	366
XspI	CTAG	3 cut(s)	267, 279, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.