Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005385.1

Orthogroup ID

OG0018535

Physical Location & Seq

Genomic Coordinates Forward (+)

83391 .. 83918

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgatcttgctcaacggcgacacaattccccagctcttcatcataattatccgctacgtcctccccttcgaggaccacaccgtccagaagcttctcttcctctacctcgagatcattaacaagacagatttccgaggcaaagttctcccggaggtgatcctcaactgccagaacctctgcaacaatctccagagccctaacgagtacatctgcggcgtcacgctccgattcctctgccgattgaacaaggccgagatcgtcgagccgttgattcagtcgattctggcgaatctggagcatcgccgctcgttcgttcgacgaaacgctgtcagcgtagtcatgtctgtgtataggcttccgcagggtgagcagttactggtggatgcgccggagattatcgatcggtcctccatttgccactgcttctggaaatatgacgccgtgccggagagtgagagagaaagagagggagagggagcgtctgagaggagtctcagagagaatatattaggagagtttattaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005911 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0009506 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030054 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_N Coatamer_beta_C Coatomer_b_Cpla

Protein Analysis

175

Amino Acids

20.28

Weight (kDa)

5.46

Isoelectric Point (pI)

62.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_N	PF01602	2 - 125	4.3e-20	Adaptin N terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018535)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g07040
rosa_multiflora	Rmu_sc0001136.1_g000002 Rmu_sc0001437.1_g000003 Rmu_sc0005385.1_g000021 Rmu_sc0010640.1_g000008
rosa_roxburghii	Rroxscaffold_4G00292690 Rroxscaffold_5G00356490
rosa_samantha	Rh5DG227500 Rh6AG009200 Rh6AG111800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AccBSI	CCGCTC	1 cut(s)	306
AciI	CCGC	4 cut(s)	52, 213, 304, 359
AclWI	GGATC	1 cut(s)	151
AcyI	GRCGYC	2 cut(s)	216, 438
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	244
AluBI	AGCT	2 cut(s)	34, 91
AluI	AGCT	2 cut(s)	34, 91
Alw26I	GTCTC	1 cut(s)	497
AlwI	GGATC	1 cut(s)	151
AlwNI	CAGNNNCTG	1 cut(s)	376
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	1 cut(s)	249
AseI	ATTAAT	1 cut(s)	522
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	2 cut(s)	73, 405
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	2 cut(s)	166, 377
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	2 cut(s)	73, 405
BanII	GRGCYC	1 cut(s)	197
BceAI	ACGGC	3 cut(s)	31, 250, 425
BcgI	CGANNNNNNTGC	2 cut(s)	216, 250
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	497
BisI	GCNGC	2 cut(s)	214, 304
BlsI	GCNGC	2 cut(s)	215, 305
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	2 cut(s)	73, 405
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	73, 405
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	2 cut(s)	307, 373
BpmI	CTGGAG	2 cut(s)	173, 314
BpuMI	CCSGG	1 cut(s)	149
Bsa29I	ATCGAT	1 cut(s)	399
BsaHI	GRCGYC	2 cut(s)	216, 438
BsaJI	CCNNGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	381
BseCI	ATCGAT	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMII	CTCAG	2 cut(s)	474, 508
BseNI	ACTGG	1 cut(s)	381
BseRI	GAGGAG	1 cut(s)	502
BseYI	CCCAGC	1 cut(s)	30
Bsh1285I	CGRYCG	1 cut(s)	403
BshFI	GGCC	1 cut(s)	251
BshVI	ATCGAT	1 cut(s)	399
BsiEI	CGRYCG	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	3 cut(s)	149, 389, 446
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	497
BsnI	GGCC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	5 cut(s)	3, 111, 156, 255, 400
BspACI	CCGC	4 cut(s)	52, 213, 304, 359
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	2 cut(s)	475, 507
BspDI	ATCGAT	1 cut(s)	399
BspPI	GGATC	1 cut(s)	151
BspQI	GCTCTTC	1 cut(s)	41
BsrBI	CCGCTC	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	5 cut(s)	3, 111, 156, 255, 400
BssNI	GRCGYC	2 cut(s)	216, 438
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	2 cut(s)	41, 101
BstACI	GRCGYC	2 cut(s)	216, 438
BstDEI	CTNAG	2 cut(s)	483, 494
BstF5I	GGATG	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	5 cut(s)	6, 114, 159, 258, 403
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	5 cut(s)	3, 111, 156, 255, 400
BstMCI	CGRYCG	1 cut(s)	403
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	251
BsuTUI	ATCGAT	1 cut(s)	399
BtgZI	GCGATG	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	388
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	418
CaiI	CAGNNNCTG	1 cut(s)	376
CfoI	GCGC	1 cut(s)	388
Cfr13I	GGNCC	2 cut(s)	73, 405
ClaI	ATCGAT	1 cut(s)	399
CseI	GACGC	3 cut(s)	205, 446, 468
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	1 cut(s)	340
CviJI	RGCY	6 cut(s)	34, 91, 195, 251, 265, 355
CviKI_1	RGCY	6 cut(s)	34, 91, 195, 251, 265, 355
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	2 cut(s)	483, 494
DpnI	GATC	5 cut(s)	5, 113, 158, 257, 402
DpnII	GATC	5 cut(s)	3, 111, 156, 255, 400
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
Eam1104I	CTCTTC	2 cut(s)	41, 101
EarI	CTCTTC	2 cut(s)	41, 101
Eco24I	GRGCYC	1 cut(s)	197
Eco47I	GGWCC	2 cut(s)	73, 405
Eco88I	CYCGRG	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	197
FaeI	CATG	1 cut(s)	343
FaiI	YATR	5 cut(s)	44, 341, 351, 435, 506
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	214, 304
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	214, 304
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	2 cut(s)	214, 304
GsaI	CCCAGC	1 cut(s)	34
GsuI	CTGGAG	2 cut(s)	173, 314
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	3 cut(s)	149, 389, 446
HgaI	GACGC	3 cut(s)	205, 446, 468
HhaI	GCGC	1 cut(s)	388
Hin1I	GRCGYC	2 cut(s)	216, 438
Hin1II	CATG	1 cut(s)	343
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	5 cut(s)	228, 271, 280, 289, 490
HpaII	CCGG	3 cut(s)	149, 389, 446
HphI	GGTGA	2 cut(s)	166, 377
Hpy188I	TCNGA	4 cut(s)	134, 227, 484, 497
Hpy188III	TCNNGA	5 cut(s)	85, 109, 190, 293, 427
Hpy99I	CGWCG	2 cut(s)	263, 321
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	180
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpyF3I	CTNAG	2 cut(s)	483, 494
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	2 cut(s)	216, 438
Hsp92II	CATG	1 cut(s)	343
HspAI	GCGC	1 cut(s)	386
Kzo9I	GATC	5 cut(s)	3, 111, 156, 255, 400
LguI	GCTCTTC	1 cut(s)	41
LmnI	GCTCC	3 cut(s)	228, 295, 476
LweI	GCATC	2 cut(s)	307, 373
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	2 cut(s)	217, 372
MalI	GATC	5 cut(s)	5, 113, 158, 257, 402
MbiI	CCGCTC	1 cut(s)	306
MboI	GATC	5 cut(s)	3, 111, 156, 255, 400
MboII	GAAGA	2 cut(s)	28, 88
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	3 cut(s)	24, 45, 523
MlyI	GAGTC	1 cut(s)	499
MseI	TTAA	3 cut(s)	117, 522, 526
MslI	CAYNNNNRTG	1 cut(s)	344
MspI	CCGG	3 cut(s)	149, 389, 446
MspR9I	CCNGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	367
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	5 cut(s)	3, 111, 156, 255, 400
NlaIII	CATG	1 cut(s)	343
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	217
PacI	TTAATTAA	1 cut(s)	526
PaeR7I	CTCGAG	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	2 cut(s)	284, 330
PfeI	GAWTC	4 cut(s)	228, 271, 280, 289
PfoI	TCCNGGA	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	215, 305
Ple19I	CGATCG	1 cut(s)	403
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
PshBI	ATTAAT	1 cut(s)	522
PspFI	CCCAGC	1 cut(s)	30
PspPI	GGNCC	2 cut(s)	73, 405
PstNI	CAGNNNCTG	1 cut(s)	376
PvuI	CGATCG	1 cut(s)	403
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	344
SapI	GCTCTTC	1 cut(s)	41
SaqAI	TTAA	3 cut(s)	117, 522, 526
SatI	GCNGC	2 cut(s)	214, 304
Sau3AI	GATC	5 cut(s)	3, 111, 156, 255, 400
Sau96I	GGNCC	2 cut(s)	73, 405
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	6 cut(s)	36, 60, 93, 108, 156, 177
SfaNI	GCATC	2 cut(s)	307, 373
Sfr274I	CTCGAG	1 cut(s)	107
SinI	GGWCC	2 cut(s)	73, 405
SlaI	CTCGAG	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	3 cut(s)	24, 45, 523
SsiI	CCGC	4 cut(s)	52, 213, 304, 359
StyD4I	CCNGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	6 cut(s)	69, 108, 261, 278, 316, 399
TaqII	GACCGA	1 cut(s)	393
TasI	AATT	3 cut(s)	24, 45, 523
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	2 cut(s)	216, 306
TfiI	GAWTC	4 cut(s)	228, 271, 280, 289
Tru1I	TTAA	3 cut(s)	117, 522, 526
Tru9I	TTAA	3 cut(s)	117, 522, 526
TscAI	CASTG	1 cut(s)	425
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	425
VpaK11BI	GGWCC	2 cut(s)	73, 405
VspI	ATTAAT	1 cut(s)	522
XhoI	CTCGAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.