Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005582.1

Orthogroup ID

OG0012421

Physical Location & Seq

Genomic Coordinates Forward (+)

10574 .. 12187

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

atgcctgaaagagatgtggcatgttggaatactgcaatttcttgttattatcaaaatgggcaagctcagaaggcaatggacttgtatgagaagatgaggagttctggctttgagcctaatgtagtaacgatcactactgttatttcatcatgtgcaagacttttggatttggagagaggtagggagattcacaaggagttgatacaaaatcgattcgttttggattcctttgttagttctgctttggtagacatgtatgggaaatgtggatgtttagatatggcaaaagagatttttgaacaagtcccaagaaagaatgtcatcgcttggaactccatgattgcagcctatcgtgtaacaggtgacagtaaatcttgtatcgatctttttagaaggatgactgatgaaggaactagtccctctttgattacttttagcagcattttgttggctagttcaagatcggtccaacttcaacatggaaaattcctgcacgcgtatatgataagaaactatgtagaggctgatatctatgtttacagttcgcttattgatctctactttgtgtgtggaagtatctcgtctgctaaaaatgtctttgaaaagatgtccaagacaaatgtagtttcttggaatgttatgatttctggattcgtgaaagtgggaaattatttcagggctctagggttatatgatgagatgaaagaagctggtgtaaggccaaacgccatcacggtaactagtatcctatcggcttgttcacaactaacagcactggaaaagggtaaggagattcacagaactgttgttgatagtgagttggaaaccaatgaaatagtcatgggggctctccttgacatgtatgctaaatgtggtgcggtggatgaagcaagtaatgttttcaatagattaccaggtagagatcttgtgtcatggacatccatgatcacggcttatgggtctcatggtcagactaaaaaagctttaaagctttttgatgaaatgcaacaatccaatgcaaaaccagatggagttactcttcttgcagtgctatccgcttgtagccatgttggattagttgatgaaggttgttgctatttcaataaaatgaccagtgaatatgggattgaaccgagaatagaatattactcttgcttaatagatcttcttggccgtgctggtaggttgaatgaagcttaccaaatcatccaaagaactccacaaattagggaggatgttgacttgttaagtacactattttctgcatgtcgtttgcacggagatcaagacttgggtgtaaaaattggaagattgctaattgagaagaatcctgatgatccttcaacatatattatgttatcacatagtcttgcttctggaaacaaatggaatgaggtgcggaacgtgagactaaagatgaaagaattgggattaaggaaaaatcctgggtgtagctggatagagattaacgagaggattcagcctttctttgttcaagacgagttccacccagaatccgaaatggtatatcagtgtctcaaacttctcaagagtcacatggagggagatgagttatttccacactggggatcagcaatatttcatactatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

537

Amino Acids

60.51

Weight (kDa)

6.01

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	4 - 53	2.8e-14	PPR repeat family
PPR	PF01535	8 - 37	4.2e-07	PPR repeat
PPR_2	PF13041	105 - 149	1.1e-07	PPR repeat family
PPR_3	PF13812	105 - 149	4.4e-06	Pentatricopeptide repeat domain
PPR_long	PF17177	173 - 304	3.2e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	205 - 253	2.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	207 - 254	7.8e-14	PPR repeat family
PPR	PF01535	209 - 239	1.1e-08	PPR repeat
PPR_2	PF13041	308 - 355	1.2e-11	PPR repeat family
PPR	PF01535	310 - 338	4.5e-09	PPR repeat
E_motif	PF20431	427 - 488	4.9e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27110
fragaria_vesca	FvH4_3g28010
malus_domestica	MD03G1167900.v1.1
prunus_persica	Prupe.4G268300_v2.0.a1
pyrus_communis	pycom03g12310
rosa_chinensis	RchiOBHm_Chr3g0448241
rosa_laevigata	RLG00000025934
rosa_multiflora	Rmu_co8274213.1_g000001 Rmu_sc0005582.1_g000002 Rmu_sc0005969.1_g000039 Rmu_sc0005969.1_g000046 Rmu_sc0016487.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426370
rosa_rugosa	Rorug02G0609300
rosa_samantha	Rh3AG009100 Rh3BG008700 Rh3CG008800 Rh3DG009400
rosa_wichuraiana	Rw3G000740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	1 cut(s)	497
AciI	CCGC	3 cut(s)	878, 1056, 1399
AclWI	GGATC	2 cut(s)	1331, 1597
AcoI	YGGCCR	1 cut(s)	1171
AcsI	RAATTY	1 cut(s)	485
AfaI	GTAC	1 cut(s)	1252
AfiI	CCNNNNNNNGG	1 cut(s)	1586
AflIII	ACRYGT	3 cut(s)	252, 495, 858
AhlI	ACTAGT	2 cut(s)	413, 740
AjnI	CCWGG	2 cut(s)	913, 1444
AluBI	AGCT	6 cut(s)	65, 710, 983, 991, 1196, 1455
AluI	AGCT	6 cut(s)	65, 710, 983, 991, 1196, 1455
Alw26I	GTCTC	3 cut(s)	966, 1402, 1541
AlwI	GGATC	2 cut(s)	1331, 1597
AoxI	GGCC	2 cut(s)	719, 1171
ApeKI	GCWGC	2 cut(s)	344, 438
ApoI	RAATTY	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	466
AsuHPI	GGTGA	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	466
BanII	GRGCYC	2 cut(s)	682, 850
BbvI	GCAGC	2 cut(s)	356, 450
BccI	CCATC	2 cut(s)	737, 1022
BceAI	ACGGC	2 cut(s)	966, 1158
BciT130I	CCWGG	2 cut(s)	915, 1446
BciVI	GTATCC	1 cut(s)	755
BclI	TGATCA	1 cut(s)	945
BcoDI	GTCTC	3 cut(s)	966, 1402, 1541
BcuI	ACTAGT	2 cut(s)	413, 740
BfaI	CTAG	4 cut(s)	414, 453, 683, 741
BfuI	GTATCC	1 cut(s)	755
BglII	AGATCT	2 cut(s)	922, 1162
BisI	GCNGC	2 cut(s)	345, 439
BlsI	GCNGC	2 cut(s)	346, 440
Bme1390I	CCNGG	2 cut(s)	915, 1446
Bme18I	GGWCC	1 cut(s)	466
BmgT120I	GGNCC	1 cut(s)	466
BmrFI	CCNGG	2 cut(s)	915, 1446
BmrI	ACTGGG	1 cut(s)	1594
BmuI	ACTGGG	1 cut(s)	1594
BpuEI	CTTGAG	1 cut(s)	1532
Bsa29I	ATCGAT	2 cut(s)	211, 381
BsaI	GGTCTC	1 cut(s)	966
BsaJI	CCNNGG	1 cut(s)	1445
Bsc4I	CCNNNNNNNGG	1 cut(s)	1586
Bse1I	ACTGG	3 cut(s)	780, 1113, 1589
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	2 cut(s)	915, 1446
BseCI	ATCGAT	2 cut(s)	211, 381
BseDI	CCNNGG	1 cut(s)	1445
BseGI	GGATG	6 cut(s)	275, 402, 889, 938, 1206, 1240
BseLI	CCNNNNNNNGG	1 cut(s)	1586
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	3 cut(s)	780, 1113, 1589
BseRI	GAGGAG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	356, 450
BsgI	GTGCAG	1 cut(s)	476
Bsh1236I	CGCG	1 cut(s)	497
BshFI	GGCC	2 cut(s)	721, 1173
BshVI	ATCGAT	2 cut(s)	211, 381
BslFI	GGGAC	2 cut(s)	290, 402
BslI	CCNNNNNNNGG	1 cut(s)	1586
BsmAI	GTCTC	3 cut(s)	966, 1402, 1541
BsmFI	GGGAC	2 cut(s)	290, 402
BsnI	GGCC	2 cut(s)	721, 1173
Bso31I	GGTCTC	1 cut(s)	966
Bsp1286I	GDGCHC	2 cut(s)	682, 850
BspACI	CCGC	3 cut(s)	878, 1056, 1399
BspANI	GGCC	2 cut(s)	721, 1173
BspCNI	CTCAG	1 cut(s)	79
BspDI	ATCGAT	2 cut(s)	211, 381
BspFNI	CGCG	1 cut(s)	497
BspPI	GGATC	2 cut(s)	1331, 1597
BspTNI	GGTCTC	1 cut(s)	966
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	3 cut(s)	780, 1113, 1589
BssECI	CCNNGG	1 cut(s)	1445
Bst2UI	CCWGG	2 cut(s)	915, 1446
Bst4CI	ACNGT	5 cut(s)	139, 368, 542, 736, 805
Bst6I	CTCTTC	1 cut(s)	1044
BstC8I	GCNNGC	2 cut(s)	63, 495
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	6 cut(s)	275, 402, 889, 938, 1206, 1240
BstFNI	CGCG	1 cut(s)	497
BstMAI	GTCTC	3 cut(s)	966, 1402, 1541
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	2 cut(s)	915, 1446
BstNSI	RCATGY	4 cut(s)	24, 256, 862, 1269
BstSCI	CCNGG	2 cut(s)	913, 1444
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	2 cut(s)	356, 450
BstX2I	RGATCY	2 cut(s)	922, 1162
BstYI	RGATCY	2 cut(s)	922, 1162
Bsu15I	ATCGAT	2 cut(s)	211, 381
BsuI	GTATCC	1 cut(s)	755
BsuRI	GGCC	2 cut(s)	721, 1173
BsuTUI	ATCGAT	2 cut(s)	211, 381
BtgZI	GCGATG	1 cut(s)	307
BtsCI	GGATG	6 cut(s)	275, 402, 889, 938, 1206, 1240
BtsI	GCAGTG	1 cut(s)	1053
BtsIMutI	CAGTG	5 cut(s)	773, 1053, 1120, 1538, 1582
Cac8I	GCNNGC	2 cut(s)	63, 495
Cfr13I	GGNCC	1 cut(s)	466
ClaI	ATCGAT	2 cut(s)	211, 381
CsiI	ACCWGGT	1 cut(s)	913
Csp6I	GTAC	1 cut(s)	1251
CviQI	GTAC	1 cut(s)	1251
DdeI	CTNAG	1 cut(s)	66
DraI	TTTAAA	1 cut(s)	987
EaeI	YGGCCR	1 cut(s)	1171
Eam1104I	CTCTTC	1 cut(s)	1044
EarI	CTCTTC	1 cut(s)	1044
Eco24I	GRGCYC	2 cut(s)	682, 850
Eco31I	GGTCTC	1 cut(s)	966
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	466
EcoRII	CCWGG	2 cut(s)	913, 1444
EcoRV	GATATC	1 cut(s)	529
EcoT38I	GRGCYC	2 cut(s)	682, 850
FaqI	GGGAC	2 cut(s)	290, 402
FbaI	TGATCA	1 cut(s)	945
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	345, 439
FokI	GGATG	6 cut(s)	282, 409, 896, 925, 1193, 1247
FriOI	GRGCYC	2 cut(s)	682, 850
Fsp4HI	GCNGC	2 cut(s)	345, 439
FspBI	CTAG	4 cut(s)	414, 453, 683, 741
GluI	GCNGC	2 cut(s)	345, 439
HaeIII	GGCC	2 cut(s)	721, 1173
HincII	GTYRAC	1 cut(s)	1240
HindII	GTYRAC	1 cut(s)	1240
HindIII	AAGCTT	3 cut(s)	981, 989, 1194
HinfI	GANTC	9 cut(s)	187, 213, 224, 651, 793, 1327, 1477, 1514, 1552
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	5 cut(s)	250, 538, 761, 1240, 1253
Hpy188I	TCNGA	3 cut(s)	69, 972, 1519
Hpy188III	TCNNGA	8 cut(s)	459, 648, 655, 1286, 1331, 1377, 1496, 1549
Hpy8I	GTNNAC	5 cut(s)	250, 538, 761, 1240, 1253
HpyAV	CCTTC	5 cut(s)	64, 387, 401, 1079, 1350
HpyCH4III	ACNGT	5 cut(s)	139, 368, 542, 736, 805
HpyCH4IV	ACGT	1 cut(s)	1404
HpyCH4V	TGCA	9 cut(s)	35, 155, 344, 493, 1006, 1019, 1046, 1265, 1276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	1404
Ksp22I	TGATCA	1 cut(s)	945
Lsp1109I	GCAGC	2 cut(s)	356, 450
MabI	ACCWGGT	1 cut(s)	913
MaeI	CTAG	4 cut(s)	414, 453, 683, 741
MaeII	ACGT	1 cut(s)	1404
MaeIII	GTNAC	6 cut(s)	124, 355, 362, 736, 1033, 1553
MboII	GAAGA	5 cut(s)	103, 1031, 1157, 1320, 1336
MflI	RGATCY	2 cut(s)	922, 1162
MhlI	GDGCHC	2 cut(s)	682, 850
MluCI	AATT	7 cut(s)	36, 485, 667, 1224, 1302, 1317, 1424
MluI	ACGCGT	1 cut(s)	495
MlyI	GAGTC	1 cut(s)	1561
MmeI	TCCRAC	4 cut(s)	5, 493, 801, 1051
MnlI	CCTC	8 cut(s)	90, 170, 430, 514, 1225, 1387, 1467, 1555
MseI	TTAA	5 cut(s)	986, 1157, 1247, 1433, 1467
MspR9I	CCNGG	2 cut(s)	915, 1446
MvaI	CCWGG	2 cut(s)	915, 1446
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	1 cut(s)	71
NmuCI	GTSAC	2 cut(s)	362, 1553
NspI	RCATGY	4 cut(s)	24, 256, 862, 1269
PciI	ACATGT	2 cut(s)	252, 858
PfeI	GAWTC	8 cut(s)	187, 213, 224, 651, 793, 1327, 1477, 1514
PkrI	GCNGC	2 cut(s)	346, 440
PleI	GAGTC	1 cut(s)	1560
PpsI	GAGTC	1 cut(s)	1560
PscI	ACATGT	2 cut(s)	252, 858
Psp6I	CCWGG	2 cut(s)	913, 1444
PspGI	CCWGG	2 cut(s)	913, 1444
PspPI	GGNCC	1 cut(s)	466
PsuI	RGATCY	2 cut(s)	922, 1162
RsaI	GTAC	1 cut(s)	1252
RsaNI	GTAC	1 cut(s)	1251
SaqAI	TTAA	5 cut(s)	986, 1157, 1247, 1433, 1467
SatI	GCNGC	2 cut(s)	345, 439
Sau96I	GGNCC	1 cut(s)	466
SchI	GAGTC	1 cut(s)	1561
ScrFI	CCNGG	2 cut(s)	915, 1446
SduI	GDGCHC	2 cut(s)	682, 850
SexAI	ACCWGGT	1 cut(s)	913
SinI	GGWCC	1 cut(s)	466
SmlI	CTYRAG	1 cut(s)	1547
SmoI	CTYRAG	1 cut(s)	1547
SpeI	ACTAGT	2 cut(s)	413, 740
Sse9I	AATT	7 cut(s)	36, 485, 667, 1224, 1302, 1317, 1424
SsiI	CCGC	3 cut(s)	878, 1056, 1399
SspI	AATATT	2 cut(s)	1145, 1599
SspMI	CTAG	4 cut(s)	414, 453, 683, 741
StyD4I	CCNGG	2 cut(s)	913, 1444
TaaI	ACNGT	5 cut(s)	139, 368, 542, 736, 805
TaiI	ACGT	1 cut(s)	1407
TaqI	TCGA	2 cut(s)	211, 381
TaqII	GACCGA	1 cut(s)	454
TasI	AATT	7 cut(s)	36, 485, 667, 1224, 1302, 1317, 1424
TatI	WGTACW	1 cut(s)	1250
TfiI	GAWTC	8 cut(s)	187, 213, 224, 651, 793, 1327, 1477, 1514
Tru1I	TTAA	5 cut(s)	986, 1157, 1247, 1433, 1467
Tru9I	TTAA	5 cut(s)	986, 1157, 1247, 1433, 1467
TscAI	CASTG	5 cut(s)	780, 1053, 1120, 1538, 1589
TseFI	GTSAC	2 cut(s)	362, 1553
TseI	GCWGC	2 cut(s)	344, 438
Tsp45I	GTSAC	2 cut(s)	362, 1553
TspGWI	ACGGA	1 cut(s)	1293
TspRI	CASTG	5 cut(s)	780, 1053, 1120, 1538, 1589
VpaK11BI	GGWCC	1 cut(s)	466
XapI	RAATTY	1 cut(s)	485
XceI	RCATGY	4 cut(s)	24, 256, 862, 1269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	4 cut(s)	414, 453, 683, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.