Rmu_sc0005582.1_g000007

UDP-arabinopyranose mutase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005582.1
OG0008599
Physical Location & Seq
Forward (+)
45755 .. 46696
942 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 942 bp
atgtctaacgcaaccatagacgatagtgaggttgacattgtgattgcagcaatcagcccggacctgaaatcattcttgaatgaatggagaccaattatctcccagtttcatctgattattgtcaaagaccctgatatgaaacaggaactccaaattccagaaggatttaatgcagatgtctttaccaaagctgacataacccgcaaggtggggtcttccacctccattgtcttctcaggttactcgtgcaggtacttcggttatctagtatcacggaaaaaatatatcatctcaattgatgatgactgcaccccggctagggacagcaatggtgatttagtagatgttgttgctcagcatattgccaaccttaaaactccagcaacccctttcttttttaacacactctatgatcctttccgtaagggagcagattttgttcgcggttacccattcagcctgcggagtggggttacatgcgggctatcctgtggactgtggctcaatttggctgaccttgatgcaccaactcaggccctcaagccagagcagaggaattctcgatacgtggatgctgtaatgactgtcccagtgagagccttgctgcctgtaagtggagtcaacattgcttttgatcgtgaggtggttgggccagctttgttcccggctttgaggttggcaggtgaaggaaagtttaggtgggagacgatggaagatatatggtgcggaatgtgtgtaaaggttgtatgtgatcacctggggcttggtgtcaaaactgggatgccttatgtatggagaaaagaccgaggtgatgccgttcaaagcttgaagaaagagtgggagggggtgaagctgatggaggaagtggtccctttctttcagtcggttaggttgccacaatcttctgctgtaactgctgatcgtggcaacctaaccgactga

Protein Analysis

313

Amino Acids

34.83

Weight (kDa)

5.55

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RGP PF03214 7 - 305 2.9e-164 Reversibly glycosylated polypeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 671
Acc36I ACCTGC 2 cut(s) 240, 671
AccII CGCG 1 cut(s) 444
AciI CCGC 5 cut(s) 202, 444, 463, 480, 726
AclWI GGATC 1 cut(s) 407
AcsI RAATTY 2 cut(s) 153, 556
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 4 cut(s) 208, 318, 319, 614
AgsI TTSAA 3 cut(s) 79, 821, 829
AjnI CCWGG 1 cut(s) 756
AluBI AGCT 4 cut(s) 191, 656, 825, 853
AluI AGCT 4 cut(s) 191, 656, 825, 853
Alw26I GTCTC 2 cut(s) 82, 698
AlwI GGATC 1 cut(s) 407
AoxI GGCC 2 cut(s) 534, 650
ApeKI GCWGC 2 cut(s) 47, 604
ApoI RAATTY 2 cut(s) 153, 556
Asp700I GAANNNNTTC 1 cut(s) 71
AspS9I GGNCC 4 cut(s) 61, 535, 650, 868
AsuC2I CCSGG 3 cut(s) 59, 314, 665
AsuHPI GGTGA 5 cut(s) 344, 695, 746, 821, 859
AvaII GGWCC 2 cut(s) 61, 868
BaeI ACNNNNGTAYC 2 cut(s) 244, 277
BauI CACGAG 1 cut(s) 244
BbsI GAAGAC 2 cut(s) 207, 223
BbvI GCAGC 2 cut(s) 59, 591
BccI CCATC 2 cut(s) 703, 850
BceAI ACGGC 1 cut(s) 800
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BciT130I CCWGG 1 cut(s) 758
BclI TGATCA 1 cut(s) 751
BcnI CCSGG 3 cut(s) 59, 314, 665
BcoDI GTCTC 2 cut(s) 82, 698
BfaI CTAG 2 cut(s) 266, 318
BfuAI ACCTGC 2 cut(s) 240, 671
BisI GCNGC 2 cut(s) 48, 605
BlpI GCTNAGC 1 cut(s) 354
BlsI GCNGC 2 cut(s) 49, 606
Bme1390I CCNGG 4 cut(s) 59, 314, 665, 758
Bme18I GGWCC 2 cut(s) 61, 868
BmgT120I GGNCC 4 cut(s) 61, 535, 650, 868
BmiI GGNNCC 1 cut(s) 870
BmrFI CCNGG 4 cut(s) 59, 314, 665, 758
BmrI ACTGGG 3 cut(s) 97, 584, 786
BmsI GCATC 4 cut(s) 511, 562, 771, 802
BmuI ACTGGG 3 cut(s) 97, 584, 786
BpiI GAAGAC 2 cut(s) 207, 223
BplI GAGNNNNNCTC 2 cut(s) 544, 576
BpmI CTGGAG 1 cut(s) 363
Bpu1102I GCTNAGC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 524
BpuMI CCSGG 3 cut(s) 59, 314, 665
BsaAI YACGTR 1 cut(s) 568
BsaI GGTCTC 1 cut(s) 82
BsaJI CCNNGG 3 cut(s) 312, 757, 805
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 4 cut(s) 208, 318, 319, 614
Bse1I ACTGG 3 cut(s) 103, 590, 781
Bse3DI GCAATG 2 cut(s) 334, 624
BseBI CCWGG 1 cut(s) 758
BseDI CCNNGG 3 cut(s) 312, 757, 805
BseGI GGATG 2 cut(s) 577, 786
BseLI CCNNNNNNNGG 4 cut(s) 208, 318, 319, 614
BseMI GCAATG 2 cut(s) 334, 624
BseMII CTCAG 3 cut(s) 249, 368, 545
BseNI ACTGG 3 cut(s) 103, 590, 781
BseXI GCAGC 2 cut(s) 59, 591
BsgI GTGCAG 2 cut(s) 268, 292
Bsh1236I CGCG 1 cut(s) 444
BshFI GGCC 2 cut(s) 536, 652
BsiSI CCGG 3 cut(s) 59, 314, 665
BslFI GGGAC 3 cut(s) 335, 572, 854
BslI CCNNNNNNNGG 4 cut(s) 208, 318, 319, 614
BsmAI GTCTC 2 cut(s) 82, 698
BsmBI CGTCTC 1 cut(s) 698
BsmFI GGGAC 3 cut(s) 335, 572, 854
BsnI GGCC 2 cut(s) 536, 652
Bso31I GGTCTC 1 cut(s) 82
Bsp143I GATC 4 cut(s) 412, 634, 751, 919
Bsp1720I GCTNAGC 1 cut(s) 354
BspACI CCGC 5 cut(s) 202, 444, 463, 480, 726
BspANI GGCC 2 cut(s) 536, 652
BspCNI CTCAG 3 cut(s) 248, 367, 544
BspFNI CGCG 1 cut(s) 444
BspLI GGNNCC 1 cut(s) 870
BspMI ACCTGC 2 cut(s) 240, 671
BspPI GGATC 1 cut(s) 407
BspTNI GGTCTC 1 cut(s) 82
BsrDI GCAATG 2 cut(s) 334, 624
BsrI ACTGG 3 cut(s) 103, 590, 781
BssECI CCNNGG 3 cut(s) 312, 757, 805
BssMI GATC 4 cut(s) 412, 634, 751, 919
BssSI CACGAG 1 cut(s) 244
Bst2BI CACGAG 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 758
Bst4CI ACNGT 2 cut(s) 498, 586
BstBAI YACGTR 1 cut(s) 568
BstC8I GCNNGC 3 cut(s) 461, 482, 654
BstDEI CTNAG 3 cut(s) 235, 354, 531
BstEII GGTNACC 1 cut(s) 446
BstF5I GGATG 2 cut(s) 577, 786
BstFNI CGCG 1 cut(s) 444
BstKTI GATC 4 cut(s) 415, 637, 754, 922
BstMAI GTCTC 2 cut(s) 82, 698
BstMBI GATC 4 cut(s) 412, 634, 751, 919
BstMWI GCNNNNNNNGC 1 cut(s) 914
BstNI CCWGG 1 cut(s) 758
BstNSI RCATGY 1 cut(s) 480
BstPI GGTNACC 1 cut(s) 446
BstSCI CCNGG 4 cut(s) 57, 312, 663, 756
BstUI CGCG 1 cut(s) 444
BstV1I GCAGC 2 cut(s) 59, 591
BstV2I GAAGAC 2 cut(s) 207, 223
BsuRI GGCC 2 cut(s) 536, 652
BtsCI GGATG 2 cut(s) 577, 786
BtsIMutI CAGTG 1 cut(s) 597
BveI ACCTGC 2 cut(s) 240, 671
Cac8I GCNNGC 3 cut(s) 461, 482, 654
Cfr13I GGNCC 4 cut(s) 61, 535, 650, 868
Csp6I GTAC 1 cut(s) 253
CspCI CAANNNNNGTGG 2 cut(s) 208, 243
CviAII CATG 1 cut(s) 477
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 3 cut(s) 235, 354, 531
DpnI GATC 4 cut(s) 414, 636, 753, 921
DpnII GATC 4 cut(s) 412, 634, 751, 919
Eco31I GGTCTC 1 cut(s) 82
Eco47I GGWCC 2 cut(s) 61, 868
Eco91I GGTNACC 1 cut(s) 446
EcoO109I RGGNCCY 1 cut(s) 535
EcoO65I GGTNACC 1 cut(s) 446
EcoRI GAATTC 1 cut(s) 556
EcoRII CCWGG 1 cut(s) 756
Esp3I CGTCTC 1 cut(s) 698
FaeI CATG 1 cut(s) 480
FaqI GGGAC 3 cut(s) 335, 572, 854
FatI CATG 1 cut(s) 476
FauI CCCGC 2 cut(s) 209, 473
FbaI TGATCA 1 cut(s) 751
Fnu4HI GCNGC 2 cut(s) 48, 605
FokI GGATG 2 cut(s) 584, 793
Fsp4HI GCNGC 2 cut(s) 48, 605
FspBI CTAG 2 cut(s) 266, 318
GluI GCNGC 2 cut(s) 48, 605
GsuI CTGGAG 1 cut(s) 363
HaeIII GGCC 2 cut(s) 536, 652
HapII CCGG 3 cut(s) 59, 314, 665
Hin1II CATG 1 cut(s) 480
HincII GTYRAC 2 cut(s) 34, 622
HindII GTYRAC 2 cut(s) 34, 622
HindIII AAGCTT 1 cut(s) 823
HinfI GANTC 1 cut(s) 618
HpaII CCGG 3 cut(s) 59, 314, 665
HphI GGTGA 5 cut(s) 344, 695, 746, 821, 859
Hpy166II GTNNAC 3 cut(s) 34, 494, 622
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 4 cut(s) 76, 158, 561, 638
Hpy8I GTNNAC 3 cut(s) 34, 494, 622
HpyAV CCTTC 2 cut(s) 155, 680
HpyCH4III ACNGT 2 cut(s) 498, 586
HpyCH4IV ACGT 1 cut(s) 567
HpyCH4V TGCA 5 cut(s) 47, 173, 249, 309, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 914
HpyF3I CTNAG 3 cut(s) 235, 354, 531
HpySE526I ACGT 1 cut(s) 567
Hsp92II CATG 1 cut(s) 480
Ksp22I TGATCA 1 cut(s) 751
Kzo9I GATC 4 cut(s) 412, 634, 751, 919
LmnI GCTCC 1 cut(s) 428
Lsp1109I GCAGC 2 cut(s) 59, 591
LweI GCATC 4 cut(s) 511, 562, 771, 802
MaeI CTAG 2 cut(s) 266, 318
MaeII ACGT 1 cut(s) 567
MaeIII GTNAC 4 cut(s) 239, 446, 472, 910
MalI GATC 4 cut(s) 414, 636, 753, 921
MboI GATC 4 cut(s) 412, 634, 751, 919
MboII GAAGA 5 cut(s) 207, 223, 725, 841, 894
MfeI CAATTG 1 cut(s) 294
MluCI AATT 5 cut(s) 93, 153, 294, 505, 556
MlyI GAGTC 1 cut(s) 627
MnlI CCTC 9 cut(s) 22, 232, 546, 548, 634, 666, 800, 835, 853
MroXI GAANNNNTTC 1 cut(s) 71
MseI TTAA 3 cut(s) 168, 372, 399
MspI CCGG 3 cut(s) 59, 314, 665
MspR9I CCNGG 4 cut(s) 59, 314, 665, 758
MunI CAATTG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 758
MvnI CGCG 1 cut(s) 444
MwoI GCNNNNNNNGC 1 cut(s) 914
NciI CCSGG 3 cut(s) 59, 314, 665
NdeII GATC 4 cut(s) 412, 634, 751, 919
NlaIII CATG 1 cut(s) 480
NlaIV GGNNCC 1 cut(s) 870
NspI RCATGY 1 cut(s) 480
PaqCI CACCTGC 1 cut(s) 671
PdmI GAANNNNTTC 1 cut(s) 71
PkrI GCNGC 2 cut(s) 49, 606
PleI GAGTC 1 cut(s) 626
PpsI GAGTC 1 cut(s) 626
Ppu21I YACGTR 1 cut(s) 568
Psp6I CCWGG 1 cut(s) 756
PspEI GGTNACC 1 cut(s) 446
PspGI CCWGG 1 cut(s) 756
PspN4I GGNNCC 1 cut(s) 870
PspPI GGNCC 4 cut(s) 61, 535, 650, 868
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SaqAI TTAA 3 cut(s) 168, 372, 399
SatI GCNGC 2 cut(s) 48, 605
Sau3AI GATC 4 cut(s) 412, 634, 751, 919
Sau96I GGNCC 4 cut(s) 61, 535, 650, 868
SchI GAGTC 1 cut(s) 627
ScrFI CCNGG 4 cut(s) 59, 314, 665, 758
SfaNI GCATC 4 cut(s) 511, 562, 771, 802
SinI GGWCC 2 cut(s) 61, 868
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 5 cut(s) 93, 153, 294, 505, 556
SsiI CCGC 5 cut(s) 202, 444, 463, 480, 726
SspMI CTAG 2 cut(s) 266, 318
StyD4I CCNGG 4 cut(s) 57, 312, 663, 756
TaaI ACNGT 2 cut(s) 498, 586
TaiI ACGT 1 cut(s) 570
TaqI TCGA 1 cut(s) 562
TaqII GACCGA 1 cut(s) 819
TasI AATT 5 cut(s) 93, 153, 294, 505, 556
Tru1I TTAA 3 cut(s) 168, 372, 399
Tru9I TTAA 3 cut(s) 168, 372, 399
TscAI CASTG 1 cut(s) 597
TseI GCWGC 2 cut(s) 47, 604
TspDTI ATGAA 3 cut(s) 96, 98, 152
TspGWI ACGGA 2 cut(s) 289, 410
TspRI CASTG 1 cut(s) 597
VpaK11BI GGWCC 2 cut(s) 61, 868
XapI RAATTY 2 cut(s) 153, 556
XceI RCATGY 1 cut(s) 480
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 2 cut(s) 266, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.