Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005969.1

Orthogroup ID

OG0012421

Physical Location & Seq

Genomic Coordinates Forward (+)

140661 .. 145478

Gene Structure 4818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2640 bp

atgaaactaactaaccagccaatgcctagtggcaaagcaaacatccaatctgctaacccaccatctcagcctgaaccagatgctcctcccatcattcccaaccttggtacacctcagaaacaagcagaacacaaaccaagaaagcagcaacacaagcgtggcctccaagaacacggcttgggattgcgtgaacttcttgatggagtcaaaggagaagatgctctccggtatgccaaaggcgaaagagtcgtcggagacgccgccgtcggtggagatggtggagttagccgtgaagaggacgcaggcgtggctggtccggttctgaagatacccaactgcacaagcacagtggcttccattgtagctgaagctgtttgctgggcagctcattcttcttcacgaaatggttttgtgggttttgtcagaaacgaagaaagatttgaattgtgggggtttggacaaaatggcttgtgggttttgttagaaacaaagaaagatgaaatctttgctgggatttgtgggttttggggcaaaatgttcaatggagtccacatggggtttgcaaggaagcaaataaaggagatggccatagttgctaggtcagttggctatcggaaaactacaaagacgactagtttgtctcttcgccaacctcagacagtcggaccctatgcttgggcgccttctgaattacatatggactccaccaaactattatccctcttaagaacatgcatcacttcgaagtcgctgagaccaggcaagctcatccaccaaaagatactcactcaaggcttccaatacaacaccctcttgtgcaaaaacctcatagacttctacatctcttgccatttatgcccttctgcaaagcttgttttccaatccattgaaaacccatccagcatttccttgtggaattctctcatgacaggttacaccaagaacctcatgttcattgatgctcttgagctctatgaaagggtaggtcttggaaaaatgatccataaccatttgataaagactggtttcatatcagatatcgtcgtggcaagttcccttttgggaatgtatgcgaaatgcaatgtgtttgatcctgcaattctgctgtttgatgaaatgcctgaaagagatgtggcatgttggaatactgcaatttcttgttattatcaaaatgggcaagctcagaaggcaatggacttgtgtgagaagatgaggagttctggcgttgagcctaatgtagtaacgatcactactgttatttcatcttgtgcaagacttttggatttggagagaggtagggagattcacaaggagttgatacaaaatcgattcattttggattcctttgttagttctgctttggtagacatgtatgggaaatgcggatgtttagataaggcaaaagagatttttgaacaagtcccaagaaagaatgtcatcgcttggaattccatgattgcagcctatcgtgtaacaggtgacagtaaatcttgtatcgatctttttagaaggatggctgatgaaggaactagtccgtctttgattacttttagcagcattttgttggctagttcaagatcggtccaacttcaacatggaaaattcgtgcacgcatatatgataagaaactatgtagaggctgatatctatgtttacagttcgcttattgatctctactttgtgtgtggaagtatcttgtctgctaaaaatgtctttgaaaagatgtccaagacaaatgtagtttcttggaatgttatgatttctggatacgtgaaagtgggaaattatttcagggctctagggttatatgatgagatgaaagaagctggtgtaaggccaaacgccatcatggtaactagtatcctatcggcttgttcacaactaacagcactggaaaagggtaaggagattcacagaactgttgttgatagtgagttggaaaccaatgaaatagtcatgggggctctccttgacatgtatgctaaatgtggtgcggtggatgaagcacgtaatgttttcaatagattaccaggtagagatcttgtgtcatggattaccagggctcttcttgcagtgctatccgcttgtagccatgttggattagttgatgaaggttgttgctatttcaataaaatgatcagtgaatatgggattgaaccgagaatagaacattactcttgcttaatagatcttcttggccgtgctggtaggttgaatgaagcttaccaaatcatccaaagaactccacaaattagggaggatgttgacttgttaagtacactattttctgcatgtcgtttgcacggagatcaagacttgggtgtaaaaattgcaagattgctaattgagaagaatcctgatgatccttcaacatatattatgttatcacatagtcttgcttctggaaacaaatggaatgaggtgcggaaggtgagactaaagatgaaagaattgggattaaggaaaaatcctgggtgtagctggatagagattaacgagaggattcagcctttctttgttcaagatgagttccacccagaatccgaaatggtatatcagtgtctcaaacttctcaagagtcacatggagggagatgagttatttccacactggggatcagcaatatttcatactatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

879

Amino Acids

98.2

Weight (kDa)

8.15

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	376 - 425	4.6e-13	PPR repeat family
PPR	PF01535	380 - 409	5.8e-06	PPR repeat
PPR_2	PF13041	477 - 521	3.4e-07	PPR repeat family
PPR_3	PF13812	577 - 625	1.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	579 - 626	1.9e-11	PPR repeat family
PPR	PF01535	581 - 611	4.6e-09	PPR repeat
PPR_long	PF17177	594 - 748	3.2e-07	Pentacotripeptide-repeat region of PRORP
E_motif	PF20431	768 - 830	3.6e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27110
fragaria_vesca	FvH4_3g28010
malus_domestica	MD03G1167900.v1.1
prunus_persica	Prupe.4G268300_v2.0.a1
pyrus_communis	pycom03g12310
rosa_chinensis	RchiOBHm_Chr3g0448241
rosa_laevigata	RLG00000025934
rosa_multiflora	Rmu_co8274213.1_g000001 Rmu_sc0005582.1_g000002 Rmu_sc0005969.1_g000039 Rmu_sc0005969.1_g000046 Rmu_sc0016487.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426370
rosa_rugosa	Rorug02G0609300
rosa_samantha	Rh3AG009100 Rh3BG008700 Rh3CG008800 Rh3DG009400
rosa_wichuraiana	Rw3G000740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	263, 637
AccB1I	GGYRCC	1 cut(s)	679
AccI	GTMKAC	1 cut(s)	1365
AciI	CCGC	5 cut(s)	261, 1383, 1994, 2082, 2425
AclWI	GGATC	4 cut(s)	994, 1085, 2357, 2623
AcoI	YGGCCR	2 cut(s)	585, 2197
AcsI	RAATTY	3 cut(s)	916, 1447, 1601
AcuI	CTGAAG	2 cut(s)	344, 387
AcyI	GRCGYC	2 cut(s)	258, 680
AfaI	GTAC	2 cut(s)	109, 2278
AfiI	CCNNNNNNNGG	4 cut(s)	104, 295, 675, 2612
AflII	CTTAAG	1 cut(s)	724
AflIII	ACRYGT	2 cut(s)	1368, 1974
AhlI	ACTAGT	3 cut(s)	632, 1529, 1856
AjnI	CCWGG	4 cut(s)	757, 2029, 2057, 2470
AleI	CACNNNNGTG	1 cut(s)	156
Alw21I	GWGCWC	2 cut(s)	972, 1611
Alw26I	GTCTC	5 cut(s)	249, 645, 748, 2428, 2567
Alw44I	GTGCAC	1 cut(s)	1607
AlwI	GGATC	4 cut(s)	994, 1085, 2357, 2623
AoxI	GGCC	4 cut(s)	160, 585, 1835, 2197
ApaLI	GTGCAC	1 cut(s)	1607
ApeKI	GCWGC	4 cut(s)	145, 383, 1460, 1554
ApoI	RAATTY	3 cut(s)	916, 1447, 1601
ArsI	GACNNNNNNTTYG	4 cut(s)	234, 266, 619, 651
AspLEI	GCGC	1 cut(s)	682
AspS9I	GGNCC	3 cut(s)	314, 665, 1582
AsuHPI	GGTGA	2 cut(s)	1490, 2443
AsuII	TTCGAA	1 cut(s)	743
AvaII	GGWCC	3 cut(s)	314, 665, 1582
BaeGI	GKGCMC	1 cut(s)	1611
BalI	TGGCCA	1 cut(s)	587
BanI	GGYRCC	1 cut(s)	679
BanII	GRGCYC	4 cut(s)	972, 1798, 1966, 2065
Bbv12I	GWGCWC	2 cut(s)	972, 1611
BbvI	GCAGC	4 cut(s)	157, 395, 1472, 1566
BccI	CCATC	8 cut(s)	70, 98, 194, 269, 577, 904, 1507, 1853
BceAI	ACGGC	4 cut(s)	190, 248, 273, 2184
BciT130I	CCWGG	4 cut(s)	759, 2031, 2059, 2472
BciVI	GTATCC	2 cut(s)	1760, 1871
BclI	TGATCA	1 cut(s)	2136
BcoDI	GTCTC	5 cut(s)	249, 645, 748, 2428, 2567
BcuI	ACTAGT	3 cut(s)	632, 1529, 1856
BfaI	CTAG	7 cut(s)	27, 597, 633, 1530, 1569, 1799, 1857
BfoI	RGCGCY	1 cut(s)	683
BfrI	CTTAAG	1 cut(s)	724
BfuI	GTATCC	2 cut(s)	1760, 1871
BglII	AGATCT	2 cut(s)	2038, 2188
BisI	GCNGC	5 cut(s)	146, 261, 384, 1461, 1555
BlsI	GCNGC	5 cut(s)	147, 262, 385, 1462, 1556
Bme1390I	CCNGG	4 cut(s)	759, 2031, 2059, 2472
Bme18I	GGWCC	3 cut(s)	314, 665, 1582
BmgT120I	GGNCC	3 cut(s)	314, 665, 1582
BmiI	GGNNCC	2 cut(s)	667, 681
BmrFI	CCNGG	4 cut(s)	759, 2031, 2059, 2472
BmrI	ACTGGG	1 cut(s)	2620
BmsI	GCATC	4 cut(s)	70, 208, 744, 949
BmuI	ACTGGG	1 cut(s)	2620
Bpu14I	TTCGAA	1 cut(s)	743
BpuEI	CTTGAG	3 cut(s)	774, 986, 2558
Bsa29I	ATCGAT	2 cut(s)	1327, 1497
BsaAI	YACGTR	2 cut(s)	1771, 2009
BsaHI	GRCGYC	2 cut(s)	258, 680
BsaI	GGTCTC	1 cut(s)	748
BsaJI	CCNNGG	3 cut(s)	103, 2058, 2471
BsaWI	WCCGGW	2 cut(s)	225, 316
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 295, 675, 2612
Bse1I	ACTGG	3 cut(s)	1027, 1896, 2615
Bse3DI	GCAATG	2 cut(s)	1087, 1197
BseBI	CCWGG	4 cut(s)	759, 2031, 2059, 2472
BseCI	ATCGAT	2 cut(s)	1327, 1497
BseDI	CCNNGG	3 cut(s)	103, 2058, 2471
BseGI	GGATG	8 cut(s)	42, 768, 896, 1391, 1518, 2005, 2232, 2266
BseLI	CCNNNNNNNGG	4 cut(s)	104, 295, 675, 2612
BseMI	GCAATG	2 cut(s)	1087, 1197
BseMII	CTCAG	5 cut(s)	80, 128, 668, 743, 1196
BseNI	ACTGG	3 cut(s)	1027, 1896, 2615
BseRI	GAGGAG	2 cut(s)	75, 1228
BseSI	GKGCMC	1 cut(s)	1611
BseXI	GCAGC	4 cut(s)	157, 395, 1472, 1566
BseYI	CCCAGC	2 cut(s)	378, 509
BsgI	GTGCAG	1 cut(s)	322
BshFI	GGCC	4 cut(s)	162, 587, 1837, 2199
BshNI	GGYRCC	1 cut(s)	679
BshVI	ATCGAT	2 cut(s)	1327, 1497
BsiHKAI	GWGCWC	2 cut(s)	972, 1611
BsiSI	CCGG	2 cut(s)	226, 317
BslFI	GGGAC	1 cut(s)	1406
BslI	CCNNNNNNNGG	4 cut(s)	104, 295, 675, 2612
BsmAI	GTCTC	5 cut(s)	249, 645, 748, 2428, 2567
BsmBI	CGTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	1406
BsnI	GGCC	4 cut(s)	162, 587, 1837, 2199
Bso31I	GGTCTC	1 cut(s)	748
Bsp119I	TTCGAA	1 cut(s)	743
Bsp1286I	GDGCHC	5 cut(s)	972, 1611, 1798, 1966, 2065
BspACI	CCGC	5 cut(s)	261, 1383, 1994, 2082, 2425
BspANI	GGCC	4 cut(s)	162, 587, 1837, 2199
BspCNI	CTCAG	5 cut(s)	79, 127, 667, 744, 1195
BspDI	ATCGAT	2 cut(s)	1327, 1497
BspHI	TCATGA	1 cut(s)	924
BspLI	GGNNCC	2 cut(s)	667, 681
BspPI	GGATC	4 cut(s)	994, 1085, 2357, 2623
BspQI	GCTCTTC	1 cut(s)	2070
BspT104I	TTCGAA	1 cut(s)	743
BspT107I	GGYRCC	1 cut(s)	679
BspTI	CTTAAG	1 cut(s)	724
BspTNI	GGTCTC	1 cut(s)	748
BsrDI	GCAATG	2 cut(s)	1087, 1197
BsrI	ACTGG	3 cut(s)	1027, 1896, 2615
BssECI	CCNNGG	3 cut(s)	103, 2058, 2471
BssNI	GRCGYC	2 cut(s)	258, 680
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	4 cut(s)	759, 2031, 2059, 2472
Bst4CI	ACNGT	6 cut(s)	349, 661, 1255, 1484, 1658, 1921
Bst6I	CTCTTC	3 cut(s)	288, 648, 2070
BstACI	GRCGYC	2 cut(s)	258, 680
BstAFI	CTTAAG	1 cut(s)	724
BstBAI	YACGTR	2 cut(s)	1771, 2009
BstBI	TTCGAA	1 cut(s)	743
BstC8I	GCNNGC	4 cut(s)	304, 764, 1179, 1611
BstDEI	CTNAG	5 cut(s)	66, 114, 654, 752, 1182
BstF5I	GGATG	8 cut(s)	42, 768, 896, 1391, 1518, 2005, 2232, 2266
BstH2I	RGCGCY	1 cut(s)	683
BstHHI	GCGC	1 cut(s)	682
BstMAI	GTCTC	5 cut(s)	249, 645, 748, 2428, 2567
BstMWI	GCNNNNNNNGC	6 cut(s)	154, 308, 593, 855, 1187, 2069
BstNI	CCWGG	4 cut(s)	759, 2031, 2059, 2472
BstNSI	RCATGY	5 cut(s)	735, 1140, 1372, 1978, 2295
BstSCI	CCNGG	4 cut(s)	757, 2029, 2057, 2470
BstSLI	GKGCMC	1 cut(s)	1611
BstV1I	GCAGC	4 cut(s)	157, 395, 1472, 1566
BstX2I	RGATCY	2 cut(s)	2038, 2188
BstYI	RGATCY	2 cut(s)	2038, 2188
Bsu15I	ATCGAT	2 cut(s)	1327, 1497
BsuI	GTATCC	2 cut(s)	1760, 1871
BsuRI	GGCC	4 cut(s)	162, 587, 1837, 2199
BsuTUI	ATCGAT	2 cut(s)	1327, 1497
BtgZI	GCGATG	1 cut(s)	1423
BtsCI	GGATG	8 cut(s)	42, 768, 896, 1391, 1518, 2005, 2232, 2266
BtsI	GCAGTG	1 cut(s)	2079
BtsIMutI	CAGTG	6 cut(s)	354, 1889, 2079, 2146, 2564, 2608
Cac8I	GCNNGC	4 cut(s)	304, 764, 1179, 1611
CciI	TCATGA	1 cut(s)	924
CfoI	GCGC	1 cut(s)	682
Cfr13I	GGNCC	3 cut(s)	314, 665, 1582
ClaI	ATCGAT	2 cut(s)	1327, 1497
CseI	GACGC	2 cut(s)	266, 308
CsiI	ACCWGGT	1 cut(s)	2029
Csp6I	GTAC	2 cut(s)	108, 2277
CspCI	CAANNNNNGTGG	2 cut(s)	330, 365
CviQI	GTAC	2 cut(s)	108, 2277
DdeI	CTNAG	5 cut(s)	66, 114, 654, 752, 1182
DinI	GGCGCC	1 cut(s)	681
DrdI	GACNNNNNNGTC	2 cut(s)	263, 637
DseDI	GACNNNNNNGTC	2 cut(s)	263, 637
EaeI	YGGCCR	2 cut(s)	585, 2197
Eam1104I	CTCTTC	3 cut(s)	288, 648, 2070
EarI	CTCTTC	3 cut(s)	288, 648, 2070
Ecl136II	GAGCTC	1 cut(s)	970
Eco130I	CCWWGG	1 cut(s)	103
Eco24I	GRGCYC	4 cut(s)	972, 1798, 1966, 2065
Eco31I	GGTCTC	1 cut(s)	748
Eco32I	GATATC	2 cut(s)	1039, 1645
Eco47I	GGWCC	3 cut(s)	314, 665, 1582
Eco53kI	GAGCTC	1 cut(s)	970
Eco57I	CTGAAG	2 cut(s)	344, 387
EcoICRI	GAGCTC	1 cut(s)	970
EcoRI	GAATTC	2 cut(s)	916, 1447
EcoRII	CCWGG	4 cut(s)	757, 2029, 2057, 2470
EcoRV	GATATC	2 cut(s)	1039, 1645
EcoT14I	CCWWGG	1 cut(s)	103
EcoT22I	ATGCAT	1 cut(s)	737
EcoT38I	GRGCYC	4 cut(s)	972, 1798, 1966, 2065
EgeI	GGCGCC	1 cut(s)	681
EheI	GGCGCC	1 cut(s)	681
ErhI	CCWWGG	1 cut(s)	103
Esp3I	CGTCTC	1 cut(s)	249
FaqI	GGGAC	1 cut(s)	1406
FauNDI	CATATG	1 cut(s)	696
FbaI	TGATCA	1 cut(s)	2136
FblI	GTMKAC	1 cut(s)	1365
Fnu4HI	GCNGC	5 cut(s)	146, 261, 384, 1461, 1555
FokI	GGATG	8 cut(s)	29, 755, 883, 1398, 1525, 2012, 2219, 2273
FriOI	GRGCYC	4 cut(s)	972, 1798, 1966, 2065
Fsp4HI	GCNGC	5 cut(s)	146, 261, 384, 1461, 1555
FspBI	CTAG	7 cut(s)	27, 597, 633, 1530, 1569, 1799, 1857
GlaI	GCGC	1 cut(s)	681
GluI	GCNGC	5 cut(s)	146, 261, 384, 1461, 1555
GsaI	CCCAGC	2 cut(s)	382, 513
HaeII	RGCGCY	1 cut(s)	683
HaeIII	GGCC	4 cut(s)	162, 587, 1837, 2199
HapII	CCGG	2 cut(s)	226, 317
HgaI	GACGC	2 cut(s)	266, 308
HhaI	GCGC	1 cut(s)	682
Hin1I	GRCGYC	2 cut(s)	258, 680
Hin6I	GCGC	1 cut(s)	680
HinP1I	GCGC	1 cut(s)	680
HincII	GTYRAC	1 cut(s)	2266
HindII	GTYRAC	1 cut(s)	2266
HindIII	AAGCTT	2 cut(s)	869, 2220
HpaII	CCGG	2 cut(s)	226, 317
HphI	GGTGA	2 cut(s)	1490, 2443
Hpy166II	GTNNAC	9 cut(s)	110, 191, 550, 1366, 1609, 1654, 1877, 2266, 2279
Hpy8I	GTNNAC	9 cut(s)	110, 191, 550, 1366, 1609, 1654, 1877, 2266, 2279
Hpy99I	CGWCG	3 cut(s)	254, 269, 1046
HpyAV	CCTTC	8 cut(s)	693, 870, 1180, 1503, 1517, 2105, 2376, 2422
HpyCH4III	ACNGT	6 cut(s)	349, 661, 1255, 1484, 1658, 1921
HpyCH4IV	ACGT	2 cut(s)	1770, 2008
HpyF10VI	GCNNNNNNNGC	6 cut(s)	154, 308, 593, 855, 1187, 2069
HpyF3I	CTNAG	5 cut(s)	66, 114, 654, 752, 1182
HpySE526I	ACGT	2 cut(s)	1770, 2008
Hsp92I	GRCGYC	2 cut(s)	258, 680
HspAI	GCGC	1 cut(s)	680
KasI	GGCGCC	1 cut(s)	679
Ksp22I	TGATCA	1 cut(s)	2136
LguI	GCTCTTC	1 cut(s)	2070
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	4 cut(s)	157, 395, 1472, 1566
LweI	GCATC	4 cut(s)	70, 208, 744, 949
MabI	ACCWGGT	1 cut(s)	2029
MaeI	CTAG	7 cut(s)	27, 597, 633, 1530, 1569, 1799, 1857
MaeII	ACGT	2 cut(s)	1770, 2008
MaeIII	GTNAC	6 cut(s)	932, 1240, 1471, 1478, 1852, 2579
MflI	RGATCY	2 cut(s)	2038, 2188
MhlI	GDGCHC	5 cut(s)	972, 1611, 1798, 1966, 2065
MlsI	TGGCCA	1 cut(s)	587
MluNI	TGGCCA	1 cut(s)	587
Mly113I	GGCGCC	1 cut(s)	680
MlyI	GAGTC	5 cut(s)	213, 255, 555, 695, 2587
MmeI	TCCRAC	6 cut(s)	232, 643, 1121, 1609, 1917, 2077
Mox20I	TGGCCA	1 cut(s)	587
Mph1103I	ATGCAT	1 cut(s)	737
MscI	TGGCCA	1 cut(s)	587
MseI	TTAA	5 cut(s)	725, 2183, 2273, 2459, 2493
MslI	CAYNNNNRTG	1 cut(s)	156
Msp20I	TGGCCA	1 cut(s)	587
MspCI	CTTAAG	1 cut(s)	724
MspI	CCGG	2 cut(s)	226, 317
MspR9I	CCNGG	4 cut(s)	759, 2031, 2059, 2472
MvaI	CCWGG	4 cut(s)	759, 2031, 2059, 2472
MwoI	GCNNNNNNNGC	6 cut(s)	154, 308, 593, 855, 1187, 2069
NarI	GGCGCC	1 cut(s)	680
NdeI	CATATG	1 cut(s)	696
NlaIV	GGNNCC	2 cut(s)	667, 681
NmuCI	GTSAC	2 cut(s)	1478, 2579
NsiI	ATGCAT	1 cut(s)	737
NspI	RCATGY	5 cut(s)	735, 1140, 1372, 1978, 2295
NspV	TTCGAA	1 cut(s)	743
OliI	CACNNNNGTG	1 cut(s)	156
PagI	TCATGA	1 cut(s)	924
PciI	ACATGT	2 cut(s)	1368, 1974
PciSI	GCTCTTC	1 cut(s)	2070
PfeI	GAWTC	7 cut(s)	1303, 1329, 1340, 1909, 2353, 2503, 2540
PkrI	GCNGC	5 cut(s)	147, 262, 385, 1462, 1556
PleI	GAGTC	5 cut(s)	212, 254, 554, 695, 2586
PluTI	GGCGCC	1 cut(s)	683
PpsI	GAGTC	5 cut(s)	212, 254, 554, 695, 2586
Ppu21I	YACGTR	2 cut(s)	1771, 2009
PscI	ACATGT	2 cut(s)	1368, 1974
Psp124BI	GAGCTC	1 cut(s)	972
Psp6I	CCWGG	4 cut(s)	757, 2029, 2057, 2470
PspFI	CCCAGC	2 cut(s)	378, 509
PspGI	CCWGG	4 cut(s)	757, 2029, 2057, 2470
PspN4I	GGNNCC	2 cut(s)	667, 681
PspPI	GGNCC	3 cut(s)	314, 665, 1582
PsuI	RGATCY	2 cut(s)	2038, 2188
RsaI	GTAC	2 cut(s)	109, 2278
RsaNI	GTAC	2 cut(s)	108, 2277
RseI	CAYNNNNRTG	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	972
SapI	GCTCTTC	1 cut(s)	2070
SaqAI	TTAA	5 cut(s)	725, 2183, 2273, 2459, 2493
SatI	GCNGC	5 cut(s)	146, 261, 384, 1461, 1555
Sau96I	GGNCC	3 cut(s)	314, 665, 1582
SchI	GAGTC	5 cut(s)	213, 255, 555, 695, 2587
ScrFI	CCNGG	4 cut(s)	759, 2031, 2059, 2472
SduI	GDGCHC	5 cut(s)	972, 1611, 1798, 1966, 2065
SexAI	ACCWGGT	1 cut(s)	2029
SfaNI	GCATC	4 cut(s)	70, 208, 744, 949
SfoI	GGCGCC	1 cut(s)	681
SfuI	TTCGAA	1 cut(s)	743
SinI	GGWCC	3 cut(s)	314, 665, 1582
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	4 cut(s)	724, 789, 965, 2573
SmoI	CTYRAG	4 cut(s)	724, 789, 965, 2573
SpeI	ACTAGT	3 cut(s)	632, 1529, 1856
SsiI	CCGC	5 cut(s)	261, 1383, 1994, 2082, 2425
SspDI	GGCGCC	1 cut(s)	679
SspI	AATATT	1 cut(s)	2625
SspMI	CTAG	7 cut(s)	27, 597, 633, 1530, 1569, 1799, 1857
SstI	GAGCTC	1 cut(s)	972
StyD4I	CCNGG	4 cut(s)	757, 2029, 2057, 2470
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	6 cut(s)	349, 661, 1255, 1484, 1658, 1921
TaiI	ACGT	2 cut(s)	1773, 2011
TaqI	TCGA	3 cut(s)	743, 1327, 1497
TaqII	GACCGA	1 cut(s)	1570
TatI	WGTACW	1 cut(s)	2276
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	7 cut(s)	1303, 1329, 1340, 1909, 2353, 2503, 2540
Tru1I	TTAA	5 cut(s)	725, 2183, 2273, 2459, 2493
Tru9I	TTAA	5 cut(s)	725, 2183, 2273, 2459, 2493
TscAI	CASTG	6 cut(s)	354, 1896, 2079, 2146, 2564, 2615
TseFI	GTSAC	2 cut(s)	1478, 2579
TseI	GCWGC	4 cut(s)	145, 383, 1460, 1554
Tsp45I	GTSAC	2 cut(s)	1478, 2579
TspGWI	ACGGA	2 cut(s)	1524, 2319
TspRI	CASTG	6 cut(s)	354, 1896, 2079, 2146, 2564, 2615
Vha464I	CTTAAG	1 cut(s)	724
VneI	GTGCAC	1 cut(s)	1607
VpaK11BI	GGWCC	3 cut(s)	314, 665, 1582
XapI	RAATTY	3 cut(s)	916, 1447, 1601
XceI	RCATGY	5 cut(s)	735, 1140, 1372, 1978, 2295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1592
XmiI	GTMKAC	1 cut(s)	1365
XspI	CTAG	7 cut(s)	27, 597, 633, 1530, 1569, 1799, 1857
Zsp2I	ATGCAT	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.