Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006103.1

Orthogroup ID

OG0012217

Physical Location & Seq

Genomic Coordinates Forward (+)

3979 .. 10425

Gene Structure 6447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006103.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2400 bp

atggaggcgaagaatagcggcaaacccatacttcaattcgcaccgtttcagagctccgtcgacgagggcttctggcacagattgtcttctttgaagctcaacaagtttggcatcgacgactctccaattcccgtcactgggttctatgcgccgtgctcacattctcaggtaccaaatcatttgactcttctagctgagtctttgccttcggattcgaatgaagaatcgagtgaaccaggagtgattcggggaaataggaatagatgctccgttcccggtattctttacaacaccaatacggtagaaggctttcgtgcacttgacaaacaggagttaattaaagcagaagcgaaaaagatttgggaggacattcagaatggaaaagctttggaggatagttctgtactttccaggttcctgcttatctcttttgcagaccttaaaaaatggagctttcattactggtttgccttccctgctctggtgcttgatcctccagcaacattgcttgatttgaaaccagcttcacaattttttagcgagaaggaggcagaatctgtctcagcagtattaaatgactggcgcgactcaagcttaactacagatgtgccgttctttttggttgtaattgatccaaattcacatgctaccattaagcatctaaaggattgggaaagttgtcaaagagctactgatcacaagttgctatttggtttttacgacccatgtcatcttccaaagaatcctggttggccgcttcggaacttgcttgcacttatttgctcaagatgggatctcaagtctgttcgctttctatgctatagagagactcgtggtttcgcagatctaggattgtcccttgttggtgaagcccaggttacagttccccaaggatggcgagatcttcataatacacccaatgcagtggggtgggaacttaacaaagggaaaaaaatacccaggtgtattagccttgctaaatctatggatccaactaggttggccatatctgctgcagatttgaatttgaaactaatgagatggcgtgctttaccttctctcaagttaaataccttgtcctctctcaagtgtctcctccttggagcaggtacacttggatgccaggttgctcgcatgcttatggcttggggcgttcagaaaattacgttggttgacaatggcagagtggctatgtctaatcccttgaggcaatccctgtatacattagatgactgtctaaatggtggtgaatttaaagctgtagcagcagttaacagtctcaagaaaatatttcccgctgtggaagcagagggtgttgtcatggctatacccatgcctggacatcccgttcctagtcaagaagagcagagtgtgcttgatgattgtaggcgccttcatgatttaattgattctcatgatgcagtattcttgttaactgatacaagagaaagtcggtggcttccgtctcttctttgtgccaatactaacaagattactataactgcagctcttgggtttgacagctttttagttatgcgccatggagcaggtccatccagctctagccatgactcaaaatctgaagctgcaaatgctttatccactgatctgaacagccttgcactgactgatagaaatggagggcacagattgggttgctacttctgcaatgatgtggttgcacctattgattcaactgccaaccgcaccttggaccagcaatgcactgttacacgcccaggcctcgctcctattgcctcagctcttgcagttgagctcttagttgggatcctacatcatcctgatgggatatttgccgaaggtgaaattgtaaactctagtaataatggaagcagtgagcaacctcttggtattttaccccatcaaatccgtggttcccttggacagttttcgcagatgacacttgtgggccactcctcagacagttgcacggcttgctgcagcattgtggtgtctgaatatcgaaaaaggggaacggaatttatactacaagcaatcaaccatcccacctatctggaggacgtgactggactaacagagctgatgaaaacagctcatgcatttcaaatggattgggatgatgggactgataatgatgatgatgattgtaggcctccttcgccttctctccagcgtccgctcaagcctacgagttctccttgctatggctacaaggatttcatccttcgacggaacaatcttccaacgacggcaaaggatctgattagttgggtgttttgtgctgtatgcctacgggtctggggcttcttgctgttgtgggatcctggcggtactctgatcgatgtgcaaccgctcctagccgacaagtggtggaggcgaaatcagtcaacaagcaggctgctatgggtgatgggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008641 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016043 GO:0016236 GO:0016237 GO:0016740 GO:0016874 GO:0016877 GO:0018410 GO:0019538 GO:0019778 GO:0019779 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0034645 GO:0034727 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0044805 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04216 map04136 map04138 map04140 map04216

Pfam Domains

Protein Families

ATG7_N ThiF

Protein Analysis

799

Amino Acids

88.36

Weight (kDa)

6.18

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45900
fragaria_vesca	FvH4_3g07910
malus_domestica	MD05G1302300.v1.1 MD10G1281000.v1.1
prunus_persica	Prupe.4G060100_v2.0.a1 Prupe.4G060100_v2.0.a1 Prupe.4G060100_v2.0.a1
pyrus_communis	pycom05g27990 pycom10g23460
rosa_chinensis	RchiOBHm_Chr5g0010641
rosa_laevigata	RLG00000031768
rosa_multiflora	Rmu_sc0006103.1_g000002 Rmu_sc0014635.1_g000003
rosa_roxburghii	Rroxscaffold_1G00065730
rosa_rugosa	Rorug04G0451400.1
rosa_samantha	Rh5AG083000 Rh5CG091000
rosa_wichuraiana	Rw0G000680 Rw0G021850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1097, 1538
Acc65I	GGTACC	1 cut(s)	169
AccB1I	GGYRCC	2 cut(s)	169, 1389
AccBSI	CCGCTC	2 cut(s)	2161, 2335
AccI	GTMKAC	2 cut(s)	60, 1220
AccII	CGCG	1 cut(s)	585
AciI	CCGC	7 cut(s)	18, 755, 1296, 1705, 2159, 2310, 2333
AcoI	YGGCCR	2 cut(s)	752, 1002
AcsI	RAATTY	4 cut(s)	637, 1024, 1250, 2000
AcuI	CTGAAG	1 cut(s)	1602
AcyI	GRCGYC	1 cut(s)	1390
AfaI	GTAC	4 cut(s)	171, 405, 1111, 2314
AfiI	CCNNNNNNNGG	8 cut(s)	137, 138, 481, 894, 1337, 1711, 2186, 2349
AgsI	TTSAA	7 cut(s)	35, 94, 517, 1024, 1030, 1695, 2087
AjiI	CACGTC	1 cut(s)	2044
AjnI	CCWGG	9 cut(s)	235, 410, 745, 873, 959, 1122, 1336, 1738, 2305
AjuI	GAANNNNNNNTTGG	2 cut(s)	1151, 1183
AloI	GAACNNNNNNTCC	2 cut(s)	1332, 1364
Alw21I	GWGCWC	4 cut(s)	56, 158, 319, 1779
Alw26I	GTCTC	5 cut(s)	565, 821, 1097, 1283, 1470
Alw44I	GTGCAC	1 cut(s)	315
AlwNI	CAGNNNCTG	1 cut(s)	557
AoxI	GGCC	5 cut(s)	752, 1002, 1741, 1930, 2132
ApaLI	GTGCAC	1 cut(s)	315
ApeKI	GCWGC	7 cut(s)	1013, 1265, 1505, 1586, 1959, 1962, 2380
ApoI	RAATTY	4 cut(s)	637, 1024, 1250, 2000
Asp700I	GAANNNNTTC	1 cut(s)	309
Asp718I	GGTACC	1 cut(s)	169
AspLEI	GCGC	4 cut(s)	151, 585, 1392, 1539
AspS9I	GGNCC	3 cut(s)	1550, 1714, 1930
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	3 cut(s)	878, 1259, 1835
AsuII	TTCGAA	1 cut(s)	215
AvaII	GGWCC	2 cut(s)	1550, 1714
BaeGI	GKGCMC	2 cut(s)	319, 1647
BalI	TGGCCA	1 cut(s)	1004
BamHI	GGATCC	3 cut(s)	988, 1788, 2302
BanI	GGYRCC	2 cut(s)	169, 1389
BanII	GRGCYC	2 cut(s)	56, 1779
BarI	GAAGNNNNNNTAC	2 cut(s)	2122, 2154
BauI	CACGAG	1 cut(s)	831
BbsI	GAAGAC	1 cut(s)	78
Bbv12I	GWGCWC	4 cut(s)	56, 158, 319, 1779
BbvCI	CCTCAGC	1 cut(s)	1759
BbvI	GCAGC	7 cut(s)	1000, 1277, 1517, 1573, 1946, 1974, 2367
BccI	CCATC	9 cut(s)	783, 888, 1035, 1561, 1799, 1890, 2031, 2096, 2386
BceAI	ACGGC	4 cut(s)	136, 595, 1968, 2247
BciT130I	CCWGG	9 cut(s)	237, 412, 747, 875, 961, 1124, 1338, 1740, 2307
BclI	TGATCA	1 cut(s)	694
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	5 cut(s)	565, 821, 1097, 1283, 1470
BfaI	CTAG	7 cut(s)	191, 848, 996, 1353, 1563, 1839, 2339
BfmI	CTRYAG	6 cut(s)	600, 820, 1014, 1260, 1503, 1960
BfoI	RGCGCY	1 cut(s)	1393
BfuAI	ACCTGC	2 cut(s)	1097, 1538
BglII	AGATCT	2 cut(s)	844, 901
BisI	GCNGC	9 cut(s)	19, 755, 1014, 1266, 1506, 1587, 1960, 1963, 2381
BlsI	GCNGC	9 cut(s)	20, 756, 1015, 1267, 1507, 1588, 1961, 1964, 2382
Bme18I	GGWCC	2 cut(s)	1550, 1714
BmgBI	CACGTC	1 cut(s)	2044
BmgT120I	GGNCC	3 cut(s)	1550, 1714, 1930
BmiI	GGNNCC	7 cut(s)	171, 416, 990, 1391, 1790, 1897, 2304
BmrI	ACTGGG	1 cut(s)	147
BmsI	GCATC	5 cut(s)	120, 254, 667, 1109, 1408
BmuI	ACTGGG	1 cut(s)	147
BoxI	GACNNNNGTC	1 cut(s)	726
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	3 cut(s)	480, 2057, 2135
Bpu10I	CCTNAGC	1 cut(s)	1759
Bpu14I	TTCGAA	1 cut(s)	215
BpuEI	CTTGAG	8 cut(s)	574, 769, 782, 1046, 1070, 1225, 1265, 2147
BpuMI	CCSGG	1 cut(s)	276
Bsa29I	ATCGAT	1 cut(s)	2322
BsaHI	GRCGYC	1 cut(s)	1390
BsaJI	CCNNGG	9 cut(s)	873, 889, 959, 1099, 1540, 1710, 1738, 1891, 1900
BsaXI	ACNNNNNCTCC	2 cut(s)	2161, 2191
Bsc4I	CCNNNNNNNGG	8 cut(s)	137, 138, 481, 894, 1337, 1711, 2186, 2349
Bse1I	ACTGG	4 cut(s)	142, 467, 584, 2053
Bse3DI	GCAATG	3 cut(s)	503, 1675, 1727
BseBI	CCWGG	9 cut(s)	237, 412, 747, 875, 961, 1124, 1338, 1740, 2307
BseCI	ATCGAT	1 cut(s)	2322
BseDI	CCNNGG	9 cut(s)	873, 889, 959, 1099, 1540, 1710, 1738, 1891, 1900
BseGI	GGATG	8 cut(s)	899, 1124, 1342, 1553, 1798, 2023, 2104, 2202
BseLI	CCNNNNNNNGG	8 cut(s)	137, 138, 481, 894, 1337, 1711, 2186, 2349
BseMI	GCAATG	3 cut(s)	503, 1675, 1727
BseMII	CTCAG	5 cut(s)	179, 186, 576, 1773, 1953
BseNI	ACTGG	4 cut(s)	142, 467, 584, 2053
BseRI	GAGGAG	2 cut(s)	1085, 1927
BseSI	GKGCMC	2 cut(s)	319, 1647
BseXI	GCAGC	7 cut(s)	1000, 1277, 1517, 1573, 1946, 1974, 2367
Bsh1236I	CGCG	1 cut(s)	585
BshFI	GGCC	5 cut(s)	754, 1004, 1743, 1932, 2134
BshNI	GGYRCC	2 cut(s)	169, 1389
BshVI	ATCGAT	1 cut(s)	2322
BsiHKAI	GWGCWC	4 cut(s)	56, 158, 319, 1779
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	2 cut(s)	841, 2119
BslI	CCNNNNNNNGG	8 cut(s)	137, 138, 481, 894, 1337, 1711, 2186, 2349
BsmAI	GTCTC	5 cut(s)	565, 821, 1097, 1283, 1470
BsmBI	CGTCTC	1 cut(s)	1470
BsmFI	GGGAC	2 cut(s)	841, 2119
BsnI	GGCC	5 cut(s)	754, 1004, 1743, 1932, 2134
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1286I	GDGCHC	5 cut(s)	56, 158, 319, 1647, 1779
Bsp19I	CCATGG	1 cut(s)	1540
BspACI	CCGC	7 cut(s)	18, 755, 1296, 1705, 2159, 2310, 2333
BspANI	GGCC	5 cut(s)	754, 1004, 1743, 1932, 2134
BspCNI	CTCAG	5 cut(s)	178, 187, 575, 1772, 1952
BspDI	ATCGAT	1 cut(s)	2322
BspFNI	CGCG	1 cut(s)	585
BspHI	TCATGA	2 cut(s)	1396, 1414
BspLI	GGNNCC	7 cut(s)	171, 416, 990, 1391, 1790, 1897, 2304
BspMAI	CTGCAG	3 cut(s)	1018, 1507, 1964
BspMI	ACCTGC	2 cut(s)	1097, 1538
BspQI	GCTCTTC	1 cut(s)	1356
BspT104I	TTCGAA	1 cut(s)	215
BspT107I	GGYRCC	2 cut(s)	169, 1389
BsrBI	CCGCTC	2 cut(s)	2161, 2335
BsrDI	GCAATG	3 cut(s)	503, 1675, 1727
BsrI	ACTGG	4 cut(s)	142, 467, 584, 2053
BssECI	CCNNGG	9 cut(s)	873, 889, 959, 1099, 1540, 1710, 1738, 1891, 1900
BssNAI	GTATAC	1 cut(s)	1221
BssNI	GRCGYC	1 cut(s)	1390
BssSI	CACGAG	1 cut(s)	831
BssT1I	CCWWGG	5 cut(s)	889, 1099, 1540, 1710, 1900
Bst1107I	GTATAC	1 cut(s)	1221
Bst2BI	CACGAG	1 cut(s)	831
Bst2UI	CCWGG	9 cut(s)	237, 412, 747, 875, 961, 1124, 1338, 1740, 2307
Bst4CI	ACNGT	8 cut(s)	45, 301, 883, 1235, 1277, 1729, 1908, 1946
Bst6I	CTCTTC	3 cut(s)	192, 1356, 1473
BstACI	GRCGYC	1 cut(s)	1390
BstAPI	GCANNNNNTGC	2 cut(s)	1372, 1956
BstBI	TTCGAA	1 cut(s)	215
BstC8I	GCNNGC	6 cut(s)	771, 1047, 1132, 1136, 1957, 2378
BstDEI	CTNAG	6 cut(s)	165, 195, 562, 1759, 1780, 1939
BstDSI	CCRYGG	2 cut(s)	1540, 1891
BstF5I	GGATG	8 cut(s)	899, 1124, 1342, 1553, 1798, 2023, 2104, 2202
BstFNI	CGCG	1 cut(s)	585
BstH2I	RGCGCY	1 cut(s)	1393
BstHHI	GCGC	4 cut(s)	151, 585, 1392, 1539
BstMAI	GTCTC	5 cut(s)	565, 821, 1097, 1283, 1470
BstNI	CCWGG	9 cut(s)	237, 412, 747, 875, 961, 1124, 1338, 1740, 2307
BstNSI	RCATGY	2 cut(s)	647, 1138
BstPAI	GACNNNNGTC	1 cut(s)	726
BstSFI	CTRYAG	6 cut(s)	600, 820, 1014, 1260, 1503, 1960
BstSLI	GKGCMC	2 cut(s)	319, 1647
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	7 cut(s)	1000, 1277, 1517, 1573, 1946, 1974, 2367
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	7 cut(s)	793, 844, 901, 988, 1788, 2239, 2302
BstXI	CCANNNNNNTGG	2 cut(s)	925, 2035
BstYI	RGATCY	7 cut(s)	793, 844, 901, 988, 1788, 2239, 2302
BstZ17I	GTATAC	1 cut(s)	1221
Bsu15I	ATCGAT	1 cut(s)	2322
BsuRI	GGCC	5 cut(s)	754, 1004, 1743, 1932, 2134
BsuTUI	ATCGAT	1 cut(s)	2322
BtgI	CCRYGG	2 cut(s)	1540, 1891
BtrI	CACGTC	1 cut(s)	2044
BtsCI	GGATG	8 cut(s)	899, 1124, 1342, 1553, 1798, 2023, 2104, 2202
BtsI	GCAGTG	2 cut(s)	930, 1861
BtsIMutI	CAGTG	6 cut(s)	135, 930, 1602, 1622, 1725, 1861
BveI	ACCTGC	2 cut(s)	1097, 1538
Cac8I	GCNNGC	6 cut(s)	771, 1047, 1132, 1136, 1957, 2378
CaiI	CAGNNNCTG	1 cut(s)	557
CciI	TCATGA	2 cut(s)	1396, 1414
CfoI	GCGC	4 cut(s)	151, 585, 1392, 1539
Cfr13I	GGNCC	3 cut(s)	1550, 1714, 1930
ClaI	ATCGAT	1 cut(s)	2322
CseI	GACGC	1 cut(s)	2144
Csp6I	GTAC	4 cut(s)	170, 404, 1110, 2313
CviQI	GTAC	4 cut(s)	170, 404, 1110, 2313
DdeI	CTNAG	6 cut(s)	165, 195, 562, 1759, 1780, 1939
DinI	GGCGCC	1 cut(s)	1391
DraI	TTTAAA	1 cut(s)	1255
EaeI	YGGCCR	2 cut(s)	752, 1002
Eam1104I	CTCTTC	3 cut(s)	192, 1356, 1473
EarI	CTCTTC	3 cut(s)	192, 1356, 1473
Ecl136II	GAGCTC	2 cut(s)	54, 1777
Eco130I	CCWWGG	5 cut(s)	889, 1099, 1540, 1710, 1900
Eco147I	AGGCCT	2 cut(s)	1743, 2134
Eco24I	GRGCYC	2 cut(s)	56, 1779
Eco47I	GGWCC	2 cut(s)	1550, 1714
Eco53kI	GAGCTC	2 cut(s)	54, 1777
Eco57I	CTGAAG	1 cut(s)	1602
EcoICRI	GAGCTC	2 cut(s)	54, 1777
EcoRII	CCWGG	9 cut(s)	235, 410, 745, 873, 959, 1122, 1336, 1738, 2305
EcoT14I	CCWWGG	5 cut(s)	889, 1099, 1540, 1710, 1900
EcoT22I	ATGCAT	1 cut(s)	2083
EcoT38I	GRGCYC	2 cut(s)	56, 1779
EgeI	GGCGCC	1 cut(s)	1391
EheI	GGCGCC	1 cut(s)	1391
ErhI	CCWWGG	5 cut(s)	889, 1099, 1540, 1710, 1900
Esp3I	CGTCTC	1 cut(s)	1470
FaqI	GGGAC	2 cut(s)	841, 2119
FauI	CCCGC	1 cut(s)	1303
FbaI	TGATCA	1 cut(s)	694
FblI	GTMKAC	2 cut(s)	60, 1220
Fnu4HI	GCNGC	9 cut(s)	19, 755, 1014, 1266, 1506, 1587, 1960, 1963, 2381
FokI	GGATG	8 cut(s)	906, 1131, 1329, 1540, 1785, 2010, 2111, 2189
FriOI	GRGCYC	2 cut(s)	56, 1779
Fsp4HI	GCNGC	9 cut(s)	19, 755, 1014, 1266, 1506, 1587, 1960, 1963, 2381
FspBI	CTAG	7 cut(s)	191, 848, 996, 1353, 1563, 1839, 2339
GlaI	GCGC	4 cut(s)	150, 584, 1391, 1538
GluI	GCNGC	9 cut(s)	19, 755, 1014, 1266, 1506, 1587, 1960, 1963, 2381
GsuI	CTGGAG	3 cut(s)	480, 2057, 2135
HaeII	RGCGCY	1 cut(s)	1393
HaeIII	GGCC	5 cut(s)	754, 1004, 1743, 1932, 2134
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	1 cut(s)	2144
HhaI	GCGC	4 cut(s)	151, 585, 1392, 1539
Hin1I	GRCGYC	1 cut(s)	1390
Hin6I	GCGC	4 cut(s)	149, 583, 1390, 1537
HinP1I	GCGC	4 cut(s)	149, 583, 1390, 1537
HincII	GTYRAC	5 cut(s)	61, 1174, 1273, 1434, 2370
HindII	GTYRAC	5 cut(s)	61, 1174, 1273, 1434, 2370
HindIII	AAGCTT	2 cut(s)	384, 592
HpaI	GTTAAC	2 cut(s)	1273, 1434
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	3 cut(s)	878, 1259, 1835
Hpy188III	TCNNGA	7 cut(s)	786, 1282, 1358, 1397, 1415, 1802, 2036
Hpy99I	CGWCG	5 cut(s)	62, 65, 119, 2214, 2233
HpyCH4III	ACNGT	8 cut(s)	45, 301, 883, 1235, 1277, 1729, 1908, 1946
HpyCH4IV	ACGT	2 cut(s)	1166, 2043
HpyF3I	CTNAG	6 cut(s)	165, 195, 562, 1759, 1780, 1939
HpySE526I	ACGT	2 cut(s)	1166, 2043
Hsp92I	GRCGYC	1 cut(s)	1390
HspAI	GCGC	4 cut(s)	149, 583, 1390, 1537
KasI	GGCGCC	1 cut(s)	1389
KpnI	GGTACC	1 cut(s)	173
Ksp22I	TGATCA	1 cut(s)	694
KspAI	GTTAAC	2 cut(s)	1273, 1434
LguI	GCTCTTC	1 cut(s)	1356
LmnI	GCTCC	7 cut(s)	59, 272, 450, 1103, 1544, 1753, 2340
Lsp1109I	GCAGC	7 cut(s)	1000, 1277, 1517, 1573, 1946, 1974, 2367
LweI	GCATC	5 cut(s)	120, 254, 667, 1109, 1408
MaeI	CTAG	7 cut(s)	191, 848, 996, 1353, 1563, 1839, 2339
MaeII	ACGT	2 cut(s)	1166, 2043
MaeIII	GTNAC	4 cut(s)	133, 877, 1729, 2044
MbiI	CCGCTC	2 cut(s)	2161, 2335
MboII	GAAGA	9 cut(s)	22, 78, 179, 233, 725, 896, 1373, 1460, 2213
MflI	RGATCY	7 cut(s)	793, 844, 901, 988, 1788, 2239, 2302
MhlI	GDGCHC	5 cut(s)	56, 158, 319, 1647, 1779
MlsI	TGGCCA	1 cut(s)	1004
MluNI	TGGCCA	1 cut(s)	1004
Mly113I	GGCGCC	1 cut(s)	1390
MlyI	GAGTC	6 cut(s)	113, 178, 206, 581, 823, 1565
MmeI	TCCRAC	2 cut(s)	1016, 2249
Mox20I	TGGCCA	1 cut(s)	1004
Mph1103I	ATGCAT	1 cut(s)	2083
MroXI	GAANNNNTTC	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	1004
MslI	CAYNNNNRTG	4 cut(s)	1117, 1139, 1803, 1970
Msp20I	TGGCCA	1 cut(s)	1004
MspA1I	CMGCKG	1 cut(s)	1298
MspI	CCGG	1 cut(s)	276
MvaI	CCWGG	9 cut(s)	237, 412, 747, 875, 961, 1124, 1338, 1740, 2307
MvnI	CGCG	1 cut(s)	585
NarI	GGCGCC	1 cut(s)	1390
NciI	CCSGG	1 cut(s)	276
NcoI	CCATGG	1 cut(s)	1540
NlaIV	GGNNCC	7 cut(s)	171, 416, 990, 1391, 1790, 1897, 2304
NmuCI	GTSAC	2 cut(s)	133, 2044
NsiI	ATGCAT	1 cut(s)	2083
NspI	RCATGY	2 cut(s)	647, 1138
NspV	TTCGAA	1 cut(s)	215
PacI	TTAATTAA	1 cut(s)	339
PaeI	GCATGC	1 cut(s)	1138
PagI	TCATGA	2 cut(s)	1396, 1414
PceI	AGGCCT	2 cut(s)	1743, 2134
PciSI	GCTCTTC	1 cut(s)	1356
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	7 cut(s)	212, 224, 244, 554, 742, 1409, 1691
PkrI	GCNGC	9 cut(s)	20, 756, 1015, 1267, 1507, 1588, 1961, 1964, 2382
PleI	GAGTC	6 cut(s)	113, 178, 205, 581, 823, 1565
PluTI	GGCGCC	1 cut(s)	1393
PpsI	GAGTC	6 cut(s)	113, 178, 205, 581, 823, 1565
PshAI	GACNNNNGTC	1 cut(s)	726
Psp124BI	GAGCTC	2 cut(s)	56, 1779
Psp6I	CCWGG	9 cut(s)	235, 410, 745, 873, 959, 1122, 1336, 1738, 2305
PspGI	CCWGG	9 cut(s)	235, 410, 745, 873, 959, 1122, 1336, 1738, 2305
PspN4I	GGNNCC	7 cut(s)	171, 416, 990, 1391, 1790, 1897, 2304
PspPI	GGNCC	3 cut(s)	1550, 1714, 1930
PstI	CTGCAG	3 cut(s)	1018, 1507, 1964
PstNI	CAGNNNCTG	1 cut(s)	557
PsuI	RGATCY	7 cut(s)	793, 844, 901, 988, 1788, 2239, 2302
RsaI	GTAC	4 cut(s)	171, 405, 1111, 2314
RsaNI	GTAC	4 cut(s)	170, 404, 1110, 2313
RseI	CAYNNNNRTG	4 cut(s)	1117, 1139, 1803, 1970
SacI	GAGCTC	2 cut(s)	56, 1779
SalI	GTCGAC	1 cut(s)	59
SapI	GCTCTTC	1 cut(s)	1356
SatI	GCNGC	9 cut(s)	19, 755, 1014, 1266, 1506, 1587, 1960, 1963, 2381
Sau96I	GGNCC	3 cut(s)	1550, 1714, 1930
SchI	GAGTC	6 cut(s)	113, 178, 206, 581, 823, 1565
SduI	GDGCHC	5 cut(s)	56, 158, 319, 1647, 1779
SfaNI	GCATC	5 cut(s)	120, 254, 667, 1109, 1408
SfcI	CTRYAG	6 cut(s)	600, 820, 1014, 1260, 1503, 1960
SfoI	GGCGCC	1 cut(s)	1391
SfuI	TTCGAA	1 cut(s)	215
SgrDI	CGTCGACG	1 cut(s)	59
SinI	GGWCC	2 cut(s)	1550, 1714
SmiMI	CAYNNNNRTG	4 cut(s)	1117, 1139, 1803, 1970
SmlI	CTYRAG	8 cut(s)	589, 784, 797, 1061, 1085, 1204, 1280, 2162
SmoI	CTYRAG	8 cut(s)	589, 784, 797, 1061, 1085, 1204, 1280, 2162
SphI	GCATGC	1 cut(s)	1138
SseBI	AGGCCT	2 cut(s)	1743, 2134
SsiI	CCGC	7 cut(s)	18, 755, 1296, 1705, 2159, 2310, 2333
SspDI	GGCGCC	1 cut(s)	1389
SspI	AATATT	1 cut(s)	1290
SspMI	CTAG	7 cut(s)	191, 848, 996, 1353, 1563, 1839, 2339
SstI	GAGCTC	2 cut(s)	56, 1779
StuI	AGGCCT	2 cut(s)	1743, 2134
StyI	CCWWGG	5 cut(s)	889, 1099, 1540, 1710, 1900
TaaI	ACNGT	8 cut(s)	45, 301, 883, 1235, 1277, 1729, 1908, 1946
TaiI	ACGT	2 cut(s)	1169, 2046
TaqI	TCGA	7 cut(s)	60, 114, 215, 227, 1984, 2209, 2322
TatI	WGTACW	1 cut(s)	403
TauI	GCSGC	2 cut(s)	21, 757
TfiI	GAWTC	7 cut(s)	212, 224, 244, 554, 742, 1409, 1691
TscAI	CASTG	6 cut(s)	142, 930, 1609, 1629, 1732, 1861
TseFI	GTSAC	2 cut(s)	133, 2044
TseI	GCWGC	7 cut(s)	1013, 1265, 1505, 1586, 1959, 1962, 2380
Tsp45I	GTSAC	2 cut(s)	133, 2044
TspDTI	ATGAA	6 cut(s)	234, 446, 896, 1385, 2081, 2191
TspGWI	ACGGA	6 cut(s)	46, 259, 1452, 1880, 2012, 2227
TspRI	CASTG	6 cut(s)	142, 930, 1609, 1629, 1732, 1861
VneI	GTGCAC	1 cut(s)	315
VpaK11BI	GGWCC	2 cut(s)	1550, 1714
XapI	RAATTY	4 cut(s)	637, 1024, 1250, 2000
XceI	RCATGY	2 cut(s)	647, 1138
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1708, 1889
XmiI	GTMKAC	2 cut(s)	60, 1220
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	7 cut(s)	191, 848, 996, 1353, 1563, 1839, 2339
Zsp2I	ATGCAT	1 cut(s)	2083

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.