Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014635.1

Orthogroup ID

OG0012217

Physical Location & Seq

Genomic Coordinates Reverse (-)

13106 .. 19975

Gene Structure 6870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014635.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3012 bp

atggaggcgaagaatagcggcaaacccatacttcaattcgcaccgtttcagagctccgtcgacgagggcttctggcacagattgtcttctttgaagctcaacaagtttggcatcgacgactctccaattcccatcactgggttctatgcgccgtgctcacattctcaggtatcaaatcatttgactcttctagctgagtctttgccttcggattcgaatgaagaatcgagtgaaccaggagtgattcggggaaataggaatagatgctccgttcccggtattctttacaacaccaatacggtagaaggctttcgtgcacttgacaaacaggagttaattaaagcagaagcgaaaaagatttgggaggacattcagaatggaaaagctttggaggatagttctgtactttccaggttcctgcttatctcttttgcagaccttaaaaaatggagctttcattactggtttgccttccctgctctggtgcttgatcctccagcaacattgcttgatttgaaaccagcttcacaattttttagcgagaaggaggcagaatctgtctcagcagtattaaatgactggcgcgactcaagcttaactacagatgtgccgttctttttggttgtaattgatccaaattcacatgctaccattaagcatctaaaggattgggaaagttgtcaaagagctactgatcacaagttgctatttggtttttacgacccatgtcatcttccaaagaatcctggttggccgcttcggaacttgcttgcacttatttgctcaagatgggatctcaagtctgttcgctttctatgctatagagagactcgtggtttcgcagatctaggattgtcccttgttggtgaagcccaggttacagttccccaaggatggcgagatcttcataatacacccaatgcagtggggtgggaacttaacaaagggaaaaaaatacccaggtgtattaaccttgctaaatctatggatccaactaggttggccatatctgctgcagatttgaatttgaaactaatgagatggcgtgctttaccttctctcaagttaaataccttgtcctctctcaagtgtctcctccttggagcaggtacacttggatgccaggttgctcgcatgcttatggcttggggcgttcagaaaattacgttggttgacaatggcagagtggctatgtctaatcccttgaggcaatccctgtatacattagatgactgtctaaatggtggtgaatttaaagctgtagcagcagttaacagtctcaagaaaatatttcccgctgtggaagcagagggtgttgtcatggctatacccatgcctggacatcccgttcctagtcaagaagagcagagtgtgcttgatgattgtaggcgccttcatgatttaattgattctcatgatgcagtattcttgttaactgatacaagagaaagtcggtggcttccgtctcttctttgtgccaatactaacaagattactataactgcagctcttgggtttgacagctttttagttatgcgccatggagcaggtccatccagctctagccatgactcaaaatctgaagctgcaaatgctttatccactgatctgaacagccttgcactgactgatagaaatggagggcacagattgggttgctacttctgcaatgatgtggttgcacctattgattcaactgccaaccgcaccttggaccagcaatgcactgttacacgcccaggcctcgctcctattgcctcagctcttgcagttgagctcttagttgggatcctacatcatcctgatgggatatttgccgaaggtgaaattgtagactctagtaataatggaagcagtgagcaacctcttggtattttaccccatcaaatccgtggttcccttggacagttttcgcagatgacacttgtgggccactcctcagacagttgcacggcttgctgcagcattgtggtgtctgaatatcgaaaaaggggaacggaatttatactacaagcaatcaaccatcccacctatctggaggacgtgactggactaacagagctgatgaaaacagctcatgcatttcaaatggattgggatgatgggactgataatgatgatgatgattgtaggcctccttcgccttctctccagcgtccgctcaagcctacgagttctccttgctatggctgcaaggatttcatccttcgacggaacaatcttccaacgacggcaaaggatctgattagttgggtgttttgtgctgtatgcctacgggtctggggcttcttgctgttgtgggatcctggcggtactctgatcgatgtgcagccgctcctagccgacaagtggtggaggcgaaatcagtcaacaagcaggctgctatggatcacgtcaggtgatgggcggtggtggtgcttaggttctctgcgttgggtgcccagagtaatctgggttatccagatgggctggtgctgggccaacaccacacatatgctgggccggacttttccacgggtctggatctgggacttgggtggatctttgactacttctttgttaccttggacgatgcctctgggtgtgccaagtttattttcaggtggattgagcccttctagattctataaaaaggctcggtatagtcatgctgtgagtaccacaattgcgtgctttggcgagcagtgtcccttatgctgggtcgagtctagttttgattggtccactaatcttatgcacgcccgaatcgcaaattctgattgttgggtctacaaatctcaaggtcatgacaatggttgtgttgttggtaattatcttgaggacaatgaggatttacctttagaatttgctagtttttatagaaaaatttcagagcagagttttattgtacaaggacaattggttgatgtagtacatcttctagtttgttctatcttagctctacgaccaaggcgtttctggcctttgtatgctcccaattgggatgccctcttaagcgattttaatcgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008641 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016043 GO:0016236 GO:0016237 GO:0016740 GO:0016874 GO:0016877 GO:0018410 GO:0019538 GO:0019778 GO:0019779 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0034645 GO:0034727 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0044805 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04216 map04136 map04138 map04140 map04216

Pfam Domains

Protein Families

ATG7_N ThiF

Protein Analysis

1003

Amino Acids

111.79

Weight (kDa)

6.31

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45900
fragaria_vesca	FvH4_3g07910
malus_domestica	MD05G1302300.v1.1 MD10G1281000.v1.1
prunus_persica	Prupe.4G060100_v2.0.a1 Prupe.4G060100_v2.0.a1 Prupe.4G060100_v2.0.a1
pyrus_communis	pycom05g27990 pycom10g23460
rosa_chinensis	RchiOBHm_Chr5g0010641
rosa_laevigata	RLG00000031768
rosa_multiflora	Rmu_sc0006103.1_g000002 Rmu_sc0014635.1_g000003
rosa_roxburghii	Rroxscaffold_1G00065730
rosa_rugosa	Rorug04G0451400.1
rosa_samantha	Rh5AG083000 Rh5CG091000
rosa_wichuraiana	Rw0G000680 Rw0G021850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1097, 1538
AccB1I	GGYRCC	2 cut(s)	1389, 2437
AccBSI	CCGCTC	2 cut(s)	2161, 2335
AccI	GTMKAC	4 cut(s)	60, 1220, 1833, 2769
AccII	CGCG	1 cut(s)	585
AciI	CCGC	8 cut(s)	18, 755, 1296, 1705, 2159, 2310, 2333, 2407
AcoI	YGGCCR	2 cut(s)	752, 1002
AcsI	RAATTY	7 cut(s)	637, 1024, 1250, 2000, 2752, 2843, 2865
AcuI	CTGAAG	1 cut(s)	1602
AcyI	GRCGYC	1 cut(s)	1390
AfaI	GTAC	6 cut(s)	405, 1111, 2314, 2659, 2889, 2913
AfiI	CCNNNNNNNGG	9 cut(s)	137, 138, 481, 894, 1337, 1711, 2186, 2349, 2697
AflII	CTTAAG	1 cut(s)	2992
AgsI	TTSAA	7 cut(s)	35, 94, 517, 1024, 1030, 1695, 2087
AjiI	CACGTC	2 cut(s)	2044, 2394
AjnI	CCWGG	9 cut(s)	235, 410, 745, 873, 959, 1122, 1336, 1738, 2305
AjuI	GAANNNNNNNTTGG	4 cut(s)	1151, 1183, 2581, 2613
AloI	GAACNNNNNNTCC	2 cut(s)	1332, 1364
Alw21I	GWGCWC	4 cut(s)	56, 158, 319, 1779
Alw26I	GTCTC	5 cut(s)	565, 821, 1097, 1283, 1470
Alw44I	GTGCAC	1 cut(s)	315
AlwNI	CAGNNNCTG	1 cut(s)	557
AoxI	GGCC	8 cut(s)	752, 1002, 1741, 1930, 2132, 2478, 2500, 2960
ApaLI	GTGCAC	1 cut(s)	315
ApeKI	GCWGC	9 cut(s)	1013, 1265, 1505, 1586, 1959, 1962, 2190, 2329, 2380
ApoI	RAATTY	7 cut(s)	637, 1024, 1250, 2000, 2752, 2843, 2865
ArsI	GACNNNNNNTTYG	2 cut(s)	2539, 2571
Asp700I	GAANNNNTTC	2 cut(s)	309, 2866
AspLEI	GCGC	4 cut(s)	151, 585, 1392, 1539
AspS9I	GGNCC	6 cut(s)	1550, 1714, 1930, 2478, 2500, 2721
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	4 cut(s)	878, 1259, 1835, 2411
AsuII	TTCGAA	1 cut(s)	215
AvaII	GGWCC	3 cut(s)	1550, 1714, 2721
BaeGI	GKGCMC	3 cut(s)	319, 1647, 2442
BalI	TGGCCA	1 cut(s)	1004
BamHI	GGATCC	3 cut(s)	988, 1788, 2302
BanI	GGYRCC	2 cut(s)	1389, 2437
BanII	GRGCYC	3 cut(s)	56, 1779, 2615
BarI	GAAGNNNNNNTAC	4 cut(s)	2122, 2154, 2901, 2933
BauI	CACGAG	1 cut(s)	831
BbsI	GAAGAC	1 cut(s)	78
Bbv12I	GWGCWC	4 cut(s)	56, 158, 319, 1779
BbvCI	CCTCAGC	1 cut(s)	1759
BbvI	GCAGC	9 cut(s)	1000, 1277, 1517, 1573, 1946, 1974, 2177, 2341, 2367
BceAI	ACGGC	4 cut(s)	136, 595, 1968, 2247
BciT130I	CCWGG	9 cut(s)	237, 412, 747, 875, 961, 1124, 1338, 1740, 2307
BclI	TGATCA	1 cut(s)	694
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	5 cut(s)	565, 821, 1097, 1283, 1470
BfmI	CTRYAG	6 cut(s)	600, 820, 1014, 1260, 1503, 1960
BfoI	RGCGCY	1 cut(s)	1393
BfrI	CTTAAG	1 cut(s)	2992
BfuAI	ACCTGC	2 cut(s)	1097, 1538
BglII	AGATCT	2 cut(s)	844, 901
Bme18I	GGWCC	3 cut(s)	1550, 1714, 2721
BmgBI	CACGTC	2 cut(s)	2044, 2394
BmgT120I	GGNCC	6 cut(s)	1550, 1714, 1930, 2478, 2500, 2721
BmiI	GGNNCC	7 cut(s)	416, 990, 1391, 1790, 1897, 2304, 2439
BmrI	ACTGGG	1 cut(s)	147
BmsI	GCATC	7 cut(s)	120, 254, 667, 1109, 1408, 2562, 2974
BmuI	ACTGGG	1 cut(s)	147
BoxI	GACNNNNGTC	1 cut(s)	726
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	3 cut(s)	480, 2057, 2135
Bpu10I	CCTNAGC	2 cut(s)	1759, 2419
Bpu14I	TTCGAA	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	276
Bsa29I	ATCGAT	1 cut(s)	2322
BsaBI	GATNNNNATC	1 cut(s)	3003
BsaHI	GRCGYC	1 cut(s)	1390
BsaXI	ACNNNNNCTCC	2 cut(s)	2161, 2191
Bsc4I	CCNNNNNNNGG	9 cut(s)	137, 138, 481, 894, 1337, 1711, 2186, 2349, 2697
Bse1I	ACTGG	4 cut(s)	142, 467, 584, 2053
Bse3DI	GCAATG	3 cut(s)	503, 1675, 1727
Bse8I	GATNNNNATC	1 cut(s)	3003
BseBI	CCWGG	9 cut(s)	237, 412, 747, 875, 961, 1124, 1338, 1740, 2307
BseCI	ATCGAT	1 cut(s)	2322
BseGI	GGATG	9 cut(s)	899, 1124, 1342, 1553, 1798, 2023, 2104, 2202, 2989
BseJI	GATNNNNATC	1 cut(s)	3003
BseLI	CCNNNNNNNGG	9 cut(s)	137, 138, 481, 894, 1337, 1711, 2186, 2349, 2697
BseMI	GCAATG	3 cut(s)	503, 1675, 1727
BseMII	CTCAG	5 cut(s)	179, 186, 576, 1773, 1953
BseNI	ACTGG	4 cut(s)	142, 467, 584, 2053
BseRI	GAGGAG	2 cut(s)	1085, 1927
BseSI	GKGCMC	3 cut(s)	319, 1647, 2442
BseXI	GCAGC	9 cut(s)	1000, 1277, 1517, 1573, 1946, 1974, 2177, 2341, 2367
BseYI	CCCAGC	3 cut(s)	2475, 2497, 2697
BsgI	GTGCAG	1 cut(s)	2348
Bsh1236I	CGCG	1 cut(s)	585
BshFI	GGCC	8 cut(s)	754, 1004, 1743, 1932, 2134, 2480, 2502, 2962
BshNI	GGYRCC	2 cut(s)	1389, 2437
BshVI	ATCGAT	1 cut(s)	2322
BsiHKAI	GWGCWC	4 cut(s)	56, 158, 319, 1779
BsiSI	CCGG	2 cut(s)	276, 2503
BslFI	GGGAC	4 cut(s)	841, 2119, 2543, 2673
BslI	CCNNNNNNNGG	9 cut(s)	137, 138, 481, 894, 1337, 1711, 2186, 2349, 2697
BsmAI	GTCTC	5 cut(s)	565, 821, 1097, 1283, 1470
BsmBI	CGTCTC	1 cut(s)	1470
BsmFI	GGGAC	4 cut(s)	841, 2119, 2543, 2673
BsnI	GGCC	8 cut(s)	754, 1004, 1743, 1932, 2134, 2480, 2502, 2962
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1286I	GDGCHC	7 cut(s)	56, 158, 319, 1647, 1779, 2442, 2615
Bsp1407I	TGTACA	1 cut(s)	2887
Bsp19I	CCATGG	1 cut(s)	1540
BspACI	CCGC	8 cut(s)	18, 755, 1296, 1705, 2159, 2310, 2333, 2407
BspANI	GGCC	8 cut(s)	754, 1004, 1743, 1932, 2134, 2480, 2502, 2962
BspCNI	CTCAG	5 cut(s)	178, 187, 575, 1772, 1952
BspDI	ATCGAT	1 cut(s)	2322
BspFNI	CGCG	1 cut(s)	585
BspHI	TCATGA	3 cut(s)	1396, 1414, 2785
BspLI	GGNNCC	7 cut(s)	416, 990, 1391, 1790, 1897, 2304, 2439
BspMAI	CTGCAG	3 cut(s)	1018, 1507, 1964
BspMI	ACCTGC	2 cut(s)	1097, 1538
BspQI	GCTCTTC	1 cut(s)	1356
BspT104I	TTCGAA	1 cut(s)	215
BspT107I	GGYRCC	2 cut(s)	1389, 2437
BspTI	CTTAAG	1 cut(s)	2992
BsrBI	CCGCTC	2 cut(s)	2161, 2335
BsrDI	GCAATG	3 cut(s)	503, 1675, 1727
BsrGI	TGTACA	1 cut(s)	2887
BsrI	ACTGG	4 cut(s)	142, 467, 584, 2053
BssNAI	GTATAC	1 cut(s)	1221
BssNI	GRCGYC	1 cut(s)	1390
BssSI	CACGAG	1 cut(s)	831
BssT1I	CCWWGG	7 cut(s)	889, 1099, 1540, 1710, 1900, 2564, 2948
Bst1107I	GTATAC	1 cut(s)	1221
Bst2BI	CACGAG	1 cut(s)	831
Bst2UI	CCWGG	9 cut(s)	237, 412, 747, 875, 961, 1124, 1338, 1740, 2307
Bst4CI	ACNGT	8 cut(s)	45, 301, 883, 1235, 1277, 1729, 1908, 1946
Bst6I	CTCTTC	3 cut(s)	192, 1356, 1473
BstACI	GRCGYC	1 cut(s)	1390
BstAFI	CTTAAG	1 cut(s)	2992
BstAPI	GCANNNNNTGC	2 cut(s)	1372, 1956
BstAUI	TGTACA	1 cut(s)	2887
BstBI	TTCGAA	1 cut(s)	215
BstC8I	GCNNGC	9 cut(s)	771, 1047, 1132, 1136, 1957, 2378, 2671, 2681, 2739
BstDEI	CTNAG	8 cut(s)	165, 195, 562, 1759, 1780, 1939, 2419, 2935
BstDSI	CCRYGG	3 cut(s)	1540, 1891, 2513
BstF5I	GGATG	9 cut(s)	899, 1124, 1342, 1553, 1798, 2023, 2104, 2202, 2989
BstFNI	CGCG	1 cut(s)	585
BstH2I	RGCGCY	1 cut(s)	1393
BstHHI	GCGC	4 cut(s)	151, 585, 1392, 1539
BstMAI	GTCTC	5 cut(s)	565, 821, 1097, 1283, 1470
BstNI	CCWGG	9 cut(s)	237, 412, 747, 875, 961, 1124, 1338, 1740, 2307
BstNSI	RCATGY	2 cut(s)	647, 1138
BstPAI	GACNNNNGTC	1 cut(s)	726
BstSFI	CTRYAG	6 cut(s)	600, 820, 1014, 1260, 1503, 1960
BstSLI	GKGCMC	3 cut(s)	319, 1647, 2442
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	9 cut(s)	1000, 1277, 1517, 1573, 1946, 1974, 2177, 2341, 2367
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	9 cut(s)	793, 844, 901, 988, 1788, 2239, 2302, 2523, 2540
BstXI	CCANNNNNNTGG	3 cut(s)	925, 2035, 2520
BstYI	RGATCY	9 cut(s)	793, 844, 901, 988, 1788, 2239, 2302, 2523, 2540
BstZ17I	GTATAC	1 cut(s)	1221
Bsu15I	ATCGAT	1 cut(s)	2322
BsuRI	GGCC	8 cut(s)	754, 1004, 1743, 1932, 2134, 2480, 2502, 2962
BsuTUI	ATCGAT	1 cut(s)	2322
BtgI	CCRYGG	3 cut(s)	1540, 1891, 2513
BtrI	CACGTC	2 cut(s)	2044, 2394
BtsCI	GGATG	9 cut(s)	899, 1124, 1342, 1553, 1798, 2023, 2104, 2202, 2989
BtsI	GCAGTG	3 cut(s)	930, 1861, 2690
BtsIMutI	CAGTG	7 cut(s)	135, 930, 1602, 1622, 1725, 1861, 2690
BveI	ACCTGC	2 cut(s)	1097, 1538
Cac8I	GCNNGC	9 cut(s)	771, 1047, 1132, 1136, 1957, 2378, 2671, 2681, 2739
CaiI	CAGNNNCTG	1 cut(s)	557
CciI	TCATGA	3 cut(s)	1396, 1414, 2785
CfoI	GCGC	4 cut(s)	151, 585, 1392, 1539
Cfr13I	GGNCC	6 cut(s)	1550, 1714, 1930, 2478, 2500, 2721
ClaI	ATCGAT	1 cut(s)	2322
CseI	GACGC	1 cut(s)	2144
Csp6I	GTAC	6 cut(s)	404, 1110, 2313, 2658, 2888, 2912
CviQI	GTAC	6 cut(s)	404, 1110, 2313, 2658, 2888, 2912
DdeI	CTNAG	8 cut(s)	165, 195, 562, 1759, 1780, 1939, 2419, 2935
DinI	GGCGCC	1 cut(s)	1391
DraI	TTTAAA	1 cut(s)	1255
EaeI	YGGCCR	2 cut(s)	752, 1002
Eam1104I	CTCTTC	3 cut(s)	192, 1356, 1473
EarI	CTCTTC	3 cut(s)	192, 1356, 1473
Ecl136II	GAGCTC	2 cut(s)	54, 1777
Eco130I	CCWWGG	7 cut(s)	889, 1099, 1540, 1710, 1900, 2564, 2948
Eco147I	AGGCCT	2 cut(s)	1743, 2134
Eco24I	GRGCYC	3 cut(s)	56, 1779, 2615
Eco47I	GGWCC	3 cut(s)	1550, 1714, 2721
Eco53kI	GAGCTC	2 cut(s)	54, 1777
Eco57I	CTGAAG	1 cut(s)	1602
EcoICRI	GAGCTC	2 cut(s)	54, 1777
EcoRII	CCWGG	9 cut(s)	235, 410, 745, 873, 959, 1122, 1336, 1738, 2305
EcoT14I	CCWWGG	7 cut(s)	889, 1099, 1540, 1710, 1900, 2564, 2948
EcoT22I	ATGCAT	1 cut(s)	2083
EcoT38I	GRGCYC	3 cut(s)	56, 1779, 2615
EgeI	GGCGCC	1 cut(s)	1391
EheI	GGCGCC	1 cut(s)	1391
ErhI	CCWWGG	7 cut(s)	889, 1099, 1540, 1710, 1900, 2564, 2948
Esp3I	CGTCTC	1 cut(s)	1470
FaqI	GGGAC	4 cut(s)	841, 2119, 2543, 2673
FauI	CCCGC	1 cut(s)	1303
FauNDI	CATATG	1 cut(s)	2493
FbaI	TGATCA	1 cut(s)	694
FblI	GTMKAC	4 cut(s)	60, 1220, 1833, 2769
FokI	GGATG	9 cut(s)	906, 1131, 1329, 1540, 1785, 2010, 2111, 2189, 2996
FriOI	GRGCYC	3 cut(s)	56, 1779, 2615
GlaI	GCGC	4 cut(s)	150, 584, 1391, 1538
GsaI	CCCAGC	3 cut(s)	2479, 2501, 2701
GsuI	CTGGAG	3 cut(s)	480, 2057, 2135
HaeII	RGCGCY	1 cut(s)	1393
HaeIII	GGCC	8 cut(s)	754, 1004, 1743, 1932, 2134, 2480, 2502, 2962
HapII	CCGG	2 cut(s)	276, 2503
HgaI	GACGC	1 cut(s)	2144
HhaI	GCGC	4 cut(s)	151, 585, 1392, 1539
Hin1I	GRCGYC	1 cut(s)	1390
Hin6I	GCGC	4 cut(s)	149, 583, 1390, 1537
HinP1I	GCGC	4 cut(s)	149, 583, 1390, 1537
HincII	GTYRAC	5 cut(s)	61, 1174, 1273, 1434, 2370
HindII	GTYRAC	5 cut(s)	61, 1174, 1273, 1434, 2370
HindIII	AAGCTT	2 cut(s)	384, 592
HpaI	GTTAAC	2 cut(s)	1273, 1434
HpaII	CCGG	2 cut(s)	276, 2503
HphI	GGTGA	4 cut(s)	878, 1259, 1835, 2411
Hpy99I	CGWCG	5 cut(s)	62, 65, 119, 2214, 2233
HpyCH4III	ACNGT	8 cut(s)	45, 301, 883, 1235, 1277, 1729, 1908, 1946
HpyCH4IV	ACGT	3 cut(s)	1166, 2043, 2393
HpyF3I	CTNAG	8 cut(s)	165, 195, 562, 1759, 1780, 1939, 2419, 2935
HpySE526I	ACGT	3 cut(s)	1166, 2043, 2393
Hsp92I	GRCGYC	1 cut(s)	1390
HspAI	GCGC	4 cut(s)	149, 583, 1390, 1537
KasI	GGCGCC	1 cut(s)	1389
Ksp22I	TGATCA	1 cut(s)	694
KspAI	GTTAAC	2 cut(s)	1273, 1434
LguI	GCTCTTC	1 cut(s)	1356
LmnI	GCTCC	8 cut(s)	59, 272, 450, 1103, 1544, 1753, 2340, 2977
Lsp1109I	GCAGC	9 cut(s)	1000, 1277, 1517, 1573, 1946, 1974, 2177, 2341, 2367
LweI	GCATC	7 cut(s)	120, 254, 667, 1109, 1408, 2562, 2974
MaeII	ACGT	3 cut(s)	1166, 2043, 2393
MaeIII	GTNAC	4 cut(s)	877, 1729, 2044, 2559
MbiI	CCGCTC	2 cut(s)	2161, 2335
MfeI	CAATTG	3 cut(s)	2664, 2897, 2977
MflI	RGATCY	9 cut(s)	793, 844, 901, 988, 1788, 2239, 2302, 2523, 2540
MhlI	GDGCHC	7 cut(s)	56, 158, 319, 1647, 1779, 2442, 2615
MlsI	TGGCCA	1 cut(s)	1004
MluNI	TGGCCA	1 cut(s)	1004
Mly113I	GGCGCC	1 cut(s)	1390
MlyI	GAGTC	8 cut(s)	113, 178, 206, 581, 823, 1565, 1829, 2714
MmeI	TCCRAC	2 cut(s)	1016, 2249
Mox20I	TGGCCA	1 cut(s)	1004
Mph1103I	ATGCAT	1 cut(s)	2083
MroXI	GAANNNNTTC	2 cut(s)	309, 2866
MscI	TGGCCA	1 cut(s)	1004
MslI	CAYNNNNRTG	6 cut(s)	1117, 1139, 1803, 1970, 2492, 2790
Msp20I	TGGCCA	1 cut(s)	1004
MspA1I	CMGCKG	1 cut(s)	1298
MspCI	CTTAAG	1 cut(s)	2992
MspI	CCGG	2 cut(s)	276, 2503
MunI	CAATTG	3 cut(s)	2664, 2897, 2977
MvaI	CCWGG	9 cut(s)	237, 412, 747, 875, 961, 1124, 1338, 1740, 2307
MvnI	CGCG	1 cut(s)	585
NarI	GGCGCC	1 cut(s)	1390
NciI	CCSGG	1 cut(s)	276
NcoI	CCATGG	1 cut(s)	1540
NdeI	CATATG	1 cut(s)	2493
NlaIV	GGNNCC	7 cut(s)	416, 990, 1391, 1790, 1897, 2304, 2439
NmuCI	GTSAC	1 cut(s)	2044
NsiI	ATGCAT	1 cut(s)	2083
NspI	RCATGY	2 cut(s)	647, 1138
NspV	TTCGAA	1 cut(s)	215
PacI	TTAATTAA	1 cut(s)	339
PaeI	GCATGC	1 cut(s)	1138
PagI	TCATGA	3 cut(s)	1396, 1414, 2785
PceI	AGGCCT	2 cut(s)	1743, 2134
PciSI	GCTCTTC	1 cut(s)	1356
PcsI	WCGNNNNNNNCGW	1 cut(s)	2950
PdmI	GAANNNNTTC	2 cut(s)	309, 2866
PfeI	GAWTC	9 cut(s)	212, 224, 244, 554, 742, 1409, 1691, 2622, 2745
PleI	GAGTC	8 cut(s)	113, 178, 205, 581, 823, 1565, 1829, 2713
PluTI	GGCGCC	1 cut(s)	1393
PpsI	GAGTC	8 cut(s)	113, 178, 205, 581, 823, 1565, 1829, 2713
PshAI	GACNNNNGTC	1 cut(s)	726
Psp124BI	GAGCTC	2 cut(s)	56, 1779
Psp6I	CCWGG	9 cut(s)	235, 410, 745, 873, 959, 1122, 1336, 1738, 2305
PspFI	CCCAGC	3 cut(s)	2475, 2497, 2697
PspGI	CCWGG	9 cut(s)	235, 410, 745, 873, 959, 1122, 1336, 1738, 2305
PspN4I	GGNNCC	7 cut(s)	416, 990, 1391, 1790, 1897, 2304, 2439
PspPI	GGNCC	6 cut(s)	1550, 1714, 1930, 2478, 2500, 2721
PstI	CTGCAG	3 cut(s)	1018, 1507, 1964
PstNI	CAGNNNCTG	1 cut(s)	557
PsuI	RGATCY	9 cut(s)	793, 844, 901, 988, 1788, 2239, 2302, 2523, 2540
RsaI	GTAC	6 cut(s)	405, 1111, 2314, 2659, 2889, 2913
RsaNI	GTAC	6 cut(s)	404, 1110, 2313, 2658, 2888, 2912
RseI	CAYNNNNRTG	6 cut(s)	1117, 1139, 1803, 1970, 2492, 2790
SacI	GAGCTC	2 cut(s)	56, 1779
SalI	GTCGAC	1 cut(s)	59
SapI	GCTCTTC	1 cut(s)	1356
Sau96I	GGNCC	6 cut(s)	1550, 1714, 1930, 2478, 2500, 2721
SchI	GAGTC	8 cut(s)	113, 178, 206, 581, 823, 1565, 1829, 2714
SduI	GDGCHC	7 cut(s)	56, 158, 319, 1647, 1779, 2442, 2615
SfaNI	GCATC	7 cut(s)	120, 254, 667, 1109, 1408, 2562, 2974
SfcI	CTRYAG	6 cut(s)	600, 820, 1014, 1260, 1503, 1960
SfoI	GGCGCC	1 cut(s)	1391
SfuI	TTCGAA	1 cut(s)	215
SgrDI	CGTCGACG	1 cut(s)	59
SinI	GGWCC	3 cut(s)	1550, 1714, 2721
SmiMI	CAYNNNNRTG	6 cut(s)	1117, 1139, 1803, 1970, 2492, 2790
SphI	GCATGC	1 cut(s)	1138
SseBI	AGGCCT	2 cut(s)	1743, 2134
SsiI	CCGC	8 cut(s)	18, 755, 1296, 1705, 2159, 2310, 2333, 2407
SspDI	GGCGCC	1 cut(s)	1389
SspI	AATATT	1 cut(s)	1290
SstI	GAGCTC	2 cut(s)	56, 1779
StuI	AGGCCT	2 cut(s)	1743, 2134
StyI	CCWWGG	7 cut(s)	889, 1099, 1540, 1710, 1900, 2564, 2948
TaaI	ACNGT	8 cut(s)	45, 301, 883, 1235, 1277, 1729, 1908, 1946
TaiI	ACGT	3 cut(s)	1169, 2046, 2396
TaqI	TCGA	8 cut(s)	60, 114, 215, 227, 1984, 2209, 2322, 2703
TatI	WGTACW	3 cut(s)	403, 2887, 2911
TauI	GCSGC	3 cut(s)	21, 757, 2335
TfiI	GAWTC	9 cut(s)	212, 224, 244, 554, 742, 1409, 1691, 2622, 2745
TscAI	CASTG	7 cut(s)	142, 930, 1609, 1629, 1732, 1861, 2690
TseFI	GTSAC	1 cut(s)	2044
TseI	GCWGC	9 cut(s)	1013, 1265, 1505, 1586, 1959, 1962, 2190, 2329, 2380
Tsp45I	GTSAC	1 cut(s)	2044
TspDTI	ATGAA	6 cut(s)	234, 446, 896, 1385, 2081, 2191
TspGWI	ACGGA	6 cut(s)	46, 259, 1452, 1880, 2012, 2227
TspRI	CASTG	7 cut(s)	142, 930, 1609, 1629, 1732, 1861, 2690
Vha464I	CTTAAG	1 cut(s)	2992
VneI	GTGCAC	1 cut(s)	315
VpaK11BI	GGWCC	3 cut(s)	1550, 1714, 2721
XapI	RAATTY	7 cut(s)	637, 1024, 1250, 2000, 2752, 2843, 2865
XbaI	TCTAGA	1 cut(s)	2618
XceI	RCATGY	2 cut(s)	647, 1138
XcmI	CCANNNNNNNNNTGG	4 cut(s)	1708, 1889, 2494, 2955
XmiI	GTMKAC	4 cut(s)	60, 1220, 1833, 2769
XmnI	GAANNNNTTC	2 cut(s)	309, 2866
Zsp2I	ATGCAT	1 cut(s)	2083

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.