Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006214.1

Orthogroup ID

OG0007589

Physical Location & Seq

Genomic Coordinates Reverse (-)

14726 .. 16615

Gene Structure 1890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006214.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atgaggtggttgctctggttgtgggtggtttgcatgtcagtgtcagctgagcttcagcggtttgagcaccccgtcgtcaaaaccgatgactccctgagctttctggccgtcggagattggggacgaagaggctcttacaatcaatctctaatcgctcatcagatgggaataatcggagagaaattaaacatagactttgtggtttcaactggggataacttttacgagaggggattgaccagcgtaaacgaccccaagtatcccgagtcctttactcaaatctacactgctcagagcctccaaaaacaatggtacattgtacttgggaaccatgactacaggggaaatgctttggcacagctgagtccagttcttcggaagatggacagccggtggctttgcctgaggtcatttctcgtcaacacgaaaattgcagacttcttcttcatcgacaccaatccatttgtggacaagtactggtccaacccaaagcactacaagcacgattggagaggtgtcgttcctaggcagcgctacctctctaccctcttgaaggatctggattttgcattgagaaattctactgcaaactggaagattgtcgttgcacatcatacaatcagaagcgtagggcatcacggggatacccaggaaatagtagaccagattcttcccattctcgaggcaaataatgttagagcctacataaacggacatgaccactgcttggaacacatgagtagcaccaatggccaaatacaattcttgactactggtggtggctccaaggcatggaaaggtgacctctctaggttgaatcaaggcgggtatgagttttactacgatgggcaaggcttcctctctgctgaaattcgaccaaccgatgcagaatttgcattctacgatgtttccggtagagttctgcatcgtttcaatatatccaattccaaggggcttcacagttccatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

323

Amino Acids

37.12

Weight (kDa)

7.8

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14700 AT1G14700 AT1G14700 AT1G14700 AT1G25230 AT1G25230 AT1G25230 AT2G01890 AT2G01890 AT2G01890
malus_domestica	MD06G1233400.v1.1
prunus_persica	Prupe.5G237800_v2.0.a1
pyrus_communis	pycom06g20800
rosa_chinensis	RchiOBHm_Chr7g0177851
rosa_laevigata	RLG00000005497
rosa_multiflora	Rmu_sc0006214.1_g000005
rosa_roxburghii	Rroxscaffold_3G00275500
rosa_rugosa	Rorug06G0410100 Rorug06G0410200
rosa_samantha	Rh7AG009600 Rh7BG009700 Rh7CG009800 Rh7DG009700
rosa_wichuraiana	Rw7G000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	727, 792
AccI	GTMKAC	1 cut(s)	660
AciI	CCGC	2 cut(s)	58, 825
AclWI	GGATC	1 cut(s)	564
AcoI	YGGCCR	2 cut(s)	105, 751
AcsI	RAATTY	3 cut(s)	577, 870, 890
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	3 cut(s)	314, 321, 476
AfeI	AGCGCT	1 cut(s)	533
AfiI	CCNNNNNNNGG	3 cut(s)	553, 727, 792
AgsI	TTSAA	4 cut(s)	207, 553, 817, 934
AjnI	CCWGG	1 cut(s)	648
AluBI	AGCT	4 cut(s)	47, 52, 99, 361
AluI	AGCT	4 cut(s)	47, 52, 99, 361
Alw21I	GWGCWC	1 cut(s)	69
AlwI	GGATC	1 cut(s)	564
Ama87I	CYCGRG	2 cut(s)	263, 680
Aor51HI	AGCGCT	1 cut(s)	533
AoxI	GGCC	2 cut(s)	105, 751
ApeKI	GCWGC	1 cut(s)	529
ApoI	RAATTY	3 cut(s)	577, 870, 890
AspA2I	CCTAGG	1 cut(s)	524
AspLEI	GCGC	1 cut(s)	534
AspS9I	GGNCC	1 cut(s)	480
AsuHPI	GGTGA	1 cut(s)	812
AvaI	CYCGRG	2 cut(s)	263, 680
AvaII	GGWCC	1 cut(s)	480
AvrII	CCTAGG	1 cut(s)	524
AxyI	CCTNAGG	1 cut(s)	404
BalI	TGGCCA	1 cut(s)	753
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	3 cut(s)	157, 376, 839
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	650
BciVI	GTATCC	2 cut(s)	270, 637
BfaI	CTAG	2 cut(s)	525, 810
BfmI	CTRYAG	1 cut(s)	337
BfoI	RGCGCY	1 cut(s)	535
BfuI	GTATCC	2 cut(s)	270, 637
BisI	GCNGC	1 cut(s)	530
BlnI	CCTAGG	1 cut(s)	524
BlpI	GCTNAGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	531
BmcAI	AGTACT	1 cut(s)	476
Bme1390I	CCNGG	1 cut(s)	650
Bme18I	GGWCC	1 cut(s)	480
BmeT110I	CYCGRG	2 cut(s)	263, 680
BmgT120I	GGNCC	1 cut(s)	480
BmiI	GGNNCC	2 cut(s)	329, 784
BmrFI	CCNGG	1 cut(s)	650
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	3 cut(s)	643, 874, 934
BmuI	ACTGGG	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	95
Bpu1102I	GCTNAGC	1 cut(s)	48
BsaJI	CCNNGG	4 cut(s)	524, 648, 786, 948
BsaWI	WCCGGW	1 cut(s)	911
Bsc4I	CCNNNNNNNGG	3 cut(s)	553, 727, 792
Bse118I	RCCGGY	1 cut(s)	390
Bse1I	ACTGG	5 cut(s)	214, 368, 482, 596, 778
Bse21I	CCTNAGG	1 cut(s)	404
BseBI	CCWGG	1 cut(s)	650
BseDI	CCNNGG	4 cut(s)	524, 648, 786, 948
BseLI	CCNNNNNNNGG	3 cut(s)	553, 727, 792
BseMII	CTCAG	5 cut(s)	39, 86, 305, 353, 395
BseNI	ACTGG	5 cut(s)	214, 368, 482, 596, 778
BseXI	GCAGC	1 cut(s)	541
BshFI	GGCC	2 cut(s)	107, 753
BsiHKAI	GWGCWC	1 cut(s)	69
BsiHKCI	CYCGRG	2 cut(s)	263, 680
BsiSI	CCGG	2 cut(s)	391, 912
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	3 cut(s)	553, 727, 792
BsmFI	GGGAC	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	896
BsnI	GGCC	2 cut(s)	107, 753
BsoBI	CYCGRG	2 cut(s)	263, 680
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	556
Bsp1720I	GCTNAGC	1 cut(s)	48
BspACI	CCGC	2 cut(s)	58, 825
BspANI	GGCC	2 cut(s)	107, 753
BspCNI	CTCAG	5 cut(s)	40, 87, 304, 354, 396
BspLI	GGNNCC	2 cut(s)	329, 784
BspPI	GGATC	1 cut(s)	564
BsrFI	RCCGGY	1 cut(s)	390
BsrI	ACTGG	5 cut(s)	214, 368, 482, 596, 778
BssAI	RCCGGY	1 cut(s)	390
BssECI	CCNNGG	4 cut(s)	524, 648, 786, 948
BssMI	GATC	1 cut(s)	556
BssT1I	CCWWGG	3 cut(s)	524, 786, 948
Bst2UI	CCWGG	1 cut(s)	650
Bst4CI	ACNGT	1 cut(s)	962
Bst6I	CTCTTC	1 cut(s)	121
BstAPI	GCANNNNNTGC	1 cut(s)	893
BstDEI	CTNAG	5 cut(s)	48, 95, 291, 362, 404
BstEII	GGTNACC	1 cut(s)	800
BstENI	CCTNNNNNAGG	1 cut(s)	551
BstH2I	RGCGCY	1 cut(s)	535
BstHHI	GCGC	1 cut(s)	534
BstKTI	GATC	1 cut(s)	559
BstMBI	GATC	1 cut(s)	556
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 499, 750, 893
BstNI	CCWGG	1 cut(s)	650
BstNSI	RCATGY	1 cut(s)	37
BstPI	GGTNACC	1 cut(s)	800
BstSCI	CCNGG	1 cut(s)	648
BstSFI	CTRYAG	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	541
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
Bsu36I	CCTNAGG	1 cut(s)	404
BsuI	GTATCC	2 cut(s)	270, 637
BsuRI	GGCC	2 cut(s)	107, 753
BtsI	GCAGTG	2 cut(s)	285, 721
BtsIMutI	CAGTG	3 cut(s)	45, 285, 721
CfoI	GCGC	1 cut(s)	534
Cfr10I	RCCGGY	1 cut(s)	390
Cfr13I	GGNCC	1 cut(s)	480
Csp6I	GTAC	3 cut(s)	313, 320, 475
CviAII	CATG	6 cut(s)	34, 332, 716, 736, 792, 967
CviQI	GTAC	3 cut(s)	313, 320, 475
DdeI	CTNAG	5 cut(s)	48, 95, 291, 362, 404
DpnI	GATC	1 cut(s)	558
DpnII	GATC	1 cut(s)	556
EaeI	YGGCCR	2 cut(s)	105, 751
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco130I	CCWWGG	3 cut(s)	524, 786, 948
Eco47I	GGWCC	1 cut(s)	480
Eco47III	AGCGCT	1 cut(s)	533
Eco57I	CTGAAG	1 cut(s)	38
Eco81I	CCTNAGG	1 cut(s)	404
Eco88I	CYCGRG	2 cut(s)	263, 680
Eco91I	GGTNACC	1 cut(s)	800
EcoNI	CCTNNNNNAGG	1 cut(s)	551
EcoO65I	GGTNACC	1 cut(s)	800
EcoRII	CCWGG	1 cut(s)	648
EcoT14I	CCWWGG	3 cut(s)	524, 786, 948
ErhI	CCWWGG	3 cut(s)	524, 786, 948
FaeI	CATG	6 cut(s)	37, 335, 719, 739, 795, 970
FalI	AAGNNNNNCTT	2 cut(s)	118, 150
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	6 cut(s)	33, 331, 715, 735, 791, 966
FauI	CCCGC	1 cut(s)	818
FblI	GTMKAC	1 cut(s)	660
Fnu4HI	GCNGC	1 cut(s)	530
Fsp4HI	GCNGC	1 cut(s)	530
FspBI	CTAG	2 cut(s)	525, 810
GlaI	GCGC	1 cut(s)	533
GluI	GCNGC	1 cut(s)	530
HaeII	RGCGCY	1 cut(s)	535
HaeIII	GGCC	2 cut(s)	107, 753
HapII	CCGG	2 cut(s)	391, 912
HhaI	GCGC	1 cut(s)	534
Hin1II	CATG	6 cut(s)	37, 335, 719, 739, 795, 970
Hin6I	GCGC	1 cut(s)	532
HinP1I	GCGC	1 cut(s)	532
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	5 cut(s)	89, 266, 364, 667, 817
HpaII	CCGG	2 cut(s)	391, 912
HphI	GGTGA	1 cut(s)	812
Hpy166II	GTNNAC	4 cut(s)	247, 421, 469, 661
Hpy188I	TCNGA	6 cut(s)	113, 162, 176, 294, 378, 623
Hpy188III	TCNNGA	5 cut(s)	263, 550, 560, 680, 766
Hpy8I	GTNNAC	4 cut(s)	247, 421, 469, 661
Hpy99I	CGWCG	2 cut(s)	77, 113
HpyAV	CCTTC	1 cut(s)	547
HpyCH4III	ACNGT	1 cut(s)	962
HpyCH4V	TGCA	8 cut(s)	33, 434, 569, 587, 608, 887, 896, 925
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 499, 750, 893
HpyF3I	CTNAG	5 cut(s)	48, 95, 291, 362, 404
Hsp92II	CATG	6 cut(s)	37, 335, 719, 739, 795, 970
HspAI	GCGC	1 cut(s)	532
Kzo9I	GATC	1 cut(s)	556
LmnI	GCTCC	1 cut(s)	788
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	3 cut(s)	643, 874, 934
MaeI	CTAG	2 cut(s)	525, 810
MaeIII	GTNAC	1 cut(s)	800
MalI	GATC	1 cut(s)	558
MboI	GATC	1 cut(s)	556
MboII	GAAGA	7 cut(s)	138, 365, 391, 433, 436, 607, 662
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	1 cut(s)	69
MlsI	TGGCCA	1 cut(s)	753
MluCI	AATT	7 cut(s)	182, 429, 577, 761, 870, 890, 943
MluNI	TGGCCA	1 cut(s)	753
MlyI	GAGTC	3 cut(s)	83, 275, 373
MmeI	TCCRAC	2 cut(s)	91, 507
Mox20I	TGGCCA	1 cut(s)	753
MscI	TGGCCA	1 cut(s)	753
MseI	TTAA	1 cut(s)	185
MslI	CAYNNNNRTG	1 cut(s)	38
Msp20I	TGGCCA	1 cut(s)	753
MspA1I	CMGCKG	3 cut(s)	47, 58, 361
MspI	CCGG	2 cut(s)	391, 912
MspR9I	CCNGG	1 cut(s)	650
Mva1269I	GAATGC	1 cut(s)	896
MvaI	CCWGG	1 cut(s)	650
MwoI	GCNNNNNNNGC	4 cut(s)	64, 499, 750, 893
NdeII	GATC	1 cut(s)	556
NlaIII	CATG	6 cut(s)	37, 335, 719, 739, 795, 970
NlaIV	GGNNCC	2 cut(s)	329, 784
NmuCI	GTSAC	1 cut(s)	800
NspI	RCATGY	1 cut(s)	37
PaeR7I	CTCGAG	1 cut(s)	680
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	1 cut(s)	896
PfeI	GAWTC	2 cut(s)	667, 817
PflMI	CCANNNNNTGG	2 cut(s)	727, 792
PkrI	GCNGC	1 cut(s)	531
PleI	GAGTC	3 cut(s)	83, 274, 372
PpsI	GAGTC	3 cut(s)	83, 274, 372
Psp6I	CCWGG	1 cut(s)	648
PspEI	GGTNACC	1 cut(s)	800
PspGI	CCWGG	1 cut(s)	648
PspN4I	GGNNCC	2 cut(s)	329, 784
PspPI	GGNCC	1 cut(s)	480
PsrI	GAACNNNNNNTAC	2 cut(s)	320, 352
PsuI	RGATCY	1 cut(s)	556
PvuII	CAGCTG	2 cut(s)	47, 361
RsaI	GTAC	3 cut(s)	314, 321, 476
RsaNI	GTAC	3 cut(s)	313, 320, 475
RseI	CAYNNNNRTG	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	1 cut(s)	530
Sau3AI	GATC	1 cut(s)	556
Sau96I	GGNCC	1 cut(s)	480
ScaI	AGTACT	1 cut(s)	476
SchI	GAGTC	3 cut(s)	83, 275, 373
ScrFI	CCNGG	1 cut(s)	650
SduI	GDGCHC	1 cut(s)	69
SfaNI	GCATC	3 cut(s)	643, 874, 934
SfcI	CTRYAG	1 cut(s)	337
Sfr274I	CTCGAG	1 cut(s)	680
SinI	GGWCC	1 cut(s)	480
SlaI	CTCGAG	1 cut(s)	680
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	7 cut(s)	182, 429, 577, 761, 870, 890, 943
SsiI	CCGC	2 cut(s)	58, 825
SspMI	CTAG	2 cut(s)	525, 810
StyD4I	CCNGG	1 cut(s)	648
StyI	CCWWGG	3 cut(s)	524, 786, 948
TaaI	ACNGT	1 cut(s)	962
TaqI	TCGA	3 cut(s)	450, 681, 874
TasI	AATT	7 cut(s)	182, 429, 577, 761, 870, 890, 943
TatI	WGTACW	2 cut(s)	319, 474
TfiI	GAWTC	2 cut(s)	667, 817
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	3 cut(s)	45, 292, 728
TseFI	GTSAC	1 cut(s)	800
TseI	GCWGC	1 cut(s)	529
Tsp45I	GTSAC	1 cut(s)	800
TspDTI	ATGAA	1 cut(s)	436
TspGWI	ACGGA	1 cut(s)	726
TspRI	CASTG	3 cut(s)	45, 292, 728
Van91I	CCANNNNNTGG	2 cut(s)	727, 792
VpaK11BI	GGWCC	1 cut(s)	480
XagI	CCTNNNNNAGG	1 cut(s)	551
XapI	RAATTY	3 cut(s)	577, 870, 890
XceI	RCATGY	1 cut(s)	37
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XhoI	CTCGAG	1 cut(s)	680
XmaJI	CCTAGG	1 cut(s)	524
XmiI	GTMKAC	1 cut(s)	660
XspI	CTAG	2 cut(s)	525, 810
ZrmI	AGTACT	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.