Rorug06G0410200

Purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007589
Physical Location & Seq
Reverse (-)
55249856 .. 55251110
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0410200.1

Sequence Viewer

Length: 528 bp
ATGTCGGCATGCATGATGCTTCTTCTTCTTCCTCTTGCTTTTATTCTTGTCTATCTCTTAAAATTCGCGTACTCAACGTTGTGGCTCCCATGGAGAGTTCAAAAACATTTTCAGAGGCAAGGTATAAGAGGCCCCGGCTACCGTCCGATCACCGGAAACTCGGCCGACTTTCGCCGTCTGTTTGAAGAAGCTCAGTCCAAGGCAATACCCTTCCACCACGACATCATCCAACGGGTGGCTCCGTTCTACCACAGATGGTCCCGCATGTACGGGAAGGATTTCTTGTACTGGTTCGGGTCGAGGCCCAGGCTTCTACTGTCCGACCCGGATATGGTGAAGGAGGTGCTCATGAATACGAGTGGTTTGTATCAGAAGAACGCGTACAACCCTTCTACTAAGATCCTGTTTGCTCAGGGCCTTGCCGGGTTGGCCGGTGAGAAATGGGCTCTTCACCGGAGGATTGCAACCCGAGCCTTCACCGTGGAGAGAGTCAAGGGCTGGGTGCCTGAAATTGTGGCTACTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323
Pfam Domains
Protein Families
Metallophos

Protein Analysis

175

Amino Acids

20.34

Weight (kDa)

10.24

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 82 - 162 5.8e-09 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 502
AccB7I CCANNNNNTGG 1 cut(s) 235
AccII CGCG 2 cut(s) 68, 380
AciI CCGC 1 cut(s) 262
AclI AACGTT 1 cut(s) 77
AclWI GGATC 1 cut(s) 394
AcoI YGGCCR 2 cut(s) 162, 429
AcsI RAATTY 1 cut(s) 62
AfaI GTAC 4 cut(s) 71, 269, 287, 383
AfiI CCNNNNNNNGG 3 cut(s) 152, 235, 331
AflIII ACRYGT 1 cut(s) 378
AgsI TTSAA 2 cut(s) 101, 185
AjnI CCWGG 1 cut(s) 305
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
Alw21I GWGCWC 1 cut(s) 348
AlwI GGATC 1 cut(s) 394
Ama87I CYCGRG 1 cut(s) 468
AoxI GGCC 5 cut(s) 130, 162, 302, 415, 429
ApoI RAATTY 1 cut(s) 62
Asp700I GAANNNNTTC 1 cut(s) 278
AspS9I GGNCC 4 cut(s) 131, 258, 303, 415
AsuC2I CCSGG 3 cut(s) 135, 326, 424
AsuHPI GGTGA 5 cut(s) 142, 346, 443, 446, 469
AvaI CYCGRG 1 cut(s) 468
AvaII GGWCC 1 cut(s) 258
BanI GGYRCC 1 cut(s) 502
BanII GRGCYC 1 cut(s) 448
BarI GAAGNNNNNNTAC 2 cut(s) 365, 397
Bbv12I GWGCWC 1 cut(s) 348
BccI CCATC 1 cut(s) 249
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 307
BcnI CCSGG 3 cut(s) 135, 326, 424
BfaI CTAG 1 cut(s) 526
BglI GCCNNNNNGGC 1 cut(s) 428
Bme1390I CCNGG 4 cut(s) 135, 307, 326, 424
Bme18I GGWCC 1 cut(s) 258
BmeT110I CYCGRG 1 cut(s) 468
BmgT120I GGNCC 4 cut(s) 131, 258, 303, 415
BmiI GGNNCC 5 cut(s) 86, 133, 240, 260, 504
BmrFI CCNGG 4 cut(s) 135, 307, 326, 424
BmsI GCATC 1 cut(s) 6
Bpu10I CCTNAGC 1 cut(s) 411
BpuMI CCSGG 3 cut(s) 135, 326, 424
BsaJI CCNNGG 5 cut(s) 89, 133, 198, 305, 480
BsaWI WCCGGW 2 cut(s) 152, 453
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 235, 331
Bse118I RCCGGY 1 cut(s) 431
Bse1I ACTGG 2 cut(s) 293, 526
BseBI CCWGG 1 cut(s) 307
BseDI CCNNGG 5 cut(s) 89, 133, 198, 305, 480
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 3 cut(s) 152, 235, 331
BseMII CTCAG 2 cut(s) 206, 425
BseNI ACTGG 2 cut(s) 293, 526
BseX3I CGGCCG 1 cut(s) 162
BseYI CCCAGC 1 cut(s) 498
Bsh1236I CGCG 2 cut(s) 68, 380
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 5 cut(s) 132, 164, 304, 417, 431
BshNI GGYRCC 1 cut(s) 502
BsiEI CGRYCG 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 348
BsiHKCI CYCGRG 1 cut(s) 468
BsiSI CCGG 6 cut(s) 135, 153, 326, 423, 432, 454
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 3 cut(s) 152, 235, 331
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 5 cut(s) 132, 164, 304, 417, 431
BsoBI CYCGRG 1 cut(s) 468
Bsp1286I GDGCHC 2 cut(s) 348, 448
Bsp143I GATC 2 cut(s) 147, 399
Bsp19I CCATGG 1 cut(s) 89
BspACI CCGC 1 cut(s) 262
BspANI GGCC 5 cut(s) 132, 164, 304, 417, 431
BspCNI CTCAG 2 cut(s) 205, 424
BspFNI CGCG 2 cut(s) 68, 380
BspHI TCATGA 1 cut(s) 348
BspLI GGNNCC 5 cut(s) 86, 133, 240, 260, 504
BspPI GGATC 1 cut(s) 394
BspQI GCTCTTC 1 cut(s) 453
BspT107I GGYRCC 1 cut(s) 502
BsrFI RCCGGY 1 cut(s) 431
BsrI ACTGG 2 cut(s) 293, 526
BssAI RCCGGY 1 cut(s) 431
BssECI CCNNGG 5 cut(s) 89, 133, 198, 305, 480
BssMI GATC 2 cut(s) 147, 399
BssT1I CCWWGG 2 cut(s) 89, 198
Bst2UI CCWGG 1 cut(s) 307
Bst4CI ACNGT 3 cut(s) 143, 318, 481
Bst6I CTCTTC 1 cut(s) 453
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 3 cut(s) 192, 396, 411
BstDSI CCRYGG 2 cut(s) 89, 480
BstF5I GGATG 1 cut(s) 225
BstFNI CGCG 2 cut(s) 68, 380
BstKTI GATC 2 cut(s) 150, 402
BstMBI GATC 2 cut(s) 147, 399
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 2 cut(s) 428, 470
BstNI CCWGG 1 cut(s) 307
BstNSI RCATGY 2 cut(s) 12, 268
BstSCI CCNGG 4 cut(s) 133, 305, 324, 422
BstUI CGCG 2 cut(s) 68, 380
BstX2I RGATCY 1 cut(s) 399
BstYI RGATCY 1 cut(s) 399
BstZI CGGCCG 1 cut(s) 162
BsuRI GGCC 5 cut(s) 132, 164, 304, 417, 431
BtgI CCRYGG 2 cut(s) 89, 480
BtsCI GGATG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 10
CciI TCATGA 1 cut(s) 348
Cfr10I RCCGGY 1 cut(s) 431
Cfr13I GGNCC 4 cut(s) 131, 258, 303, 415
Csp6I GTAC 4 cut(s) 70, 268, 286, 382
CviAII CATG 5 cut(s) 9, 13, 90, 265, 349
CviQI GTAC 4 cut(s) 70, 268, 286, 382
DdeI CTNAG 3 cut(s) 192, 396, 411
DpnI GATC 2 cut(s) 149, 401
DpnII GATC 2 cut(s) 147, 399
EaeI YGGCCR 2 cut(s) 162, 429
EagI CGGCCG 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
EclXI CGGCCG 1 cut(s) 162
Eco130I CCWWGG 2 cut(s) 89, 198
Eco24I GRGCYC 1 cut(s) 448
Eco47I GGWCC 1 cut(s) 258
Eco52I CGGCCG 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 468
EcoO109I RGGNCCY 2 cut(s) 131, 415
EcoRII CCWGG 1 cut(s) 305
EcoT14I CCWWGG 2 cut(s) 89, 198
EcoT22I ATGCAT 1 cut(s) 14
EcoT38I GRGCYC 1 cut(s) 448
ErhI CCWWGG 2 cut(s) 89, 198
FaeI CATG 5 cut(s) 12, 16, 93, 268, 352
FaiI YATR 7 cut(s) 10, 14, 91, 125, 266, 332, 350
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FaqI GGGAC 1 cut(s) 244
FatI CATG 5 cut(s) 8, 12, 89, 264, 348
FauI CCCGC 1 cut(s) 269
FokI GGATG 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 448
FspBI CTAG 1 cut(s) 526
GsaI CCCAGC 1 cut(s) 502
HaeIII GGCC 5 cut(s) 132, 164, 304, 417, 431
HapII CCGG 6 cut(s) 135, 153, 326, 423, 432, 454
Hin1II CATG 5 cut(s) 12, 16, 93, 268, 352
HinfI GANTC 1 cut(s) 489
HpaII CCGG 6 cut(s) 135, 153, 326, 423, 432, 454
HphI GGTGA 5 cut(s) 142, 346, 443, 446, 469
Hpy188I TCNGA 4 cut(s) 114, 147, 322, 372
Hpy188III TCNNGA 1 cut(s) 349
HpyAV CCTTC 5 cut(s) 220, 268, 331, 399, 484
HpyCH4III ACNGT 3 cut(s) 143, 318, 481
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 2 cut(s) 12, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 428, 470
HpyF3I CTNAG 3 cut(s) 192, 396, 411
HpySE526I ACGT 1 cut(s) 77
Hsp92II CATG 5 cut(s) 12, 16, 93, 268, 352
Kzo9I GATC 2 cut(s) 147, 399
LguI GCTCTTC 1 cut(s) 453
LmnI GCTCC 2 cut(s) 90, 244
LweI GCATC 1 cut(s) 6
MaeI CTAG 1 cut(s) 526
MaeII ACGT 1 cut(s) 77
MalI GATC 2 cut(s) 149, 401
MboI GATC 2 cut(s) 147, 399
MboII GAAGA 6 cut(s) 14, 17, 20, 197, 385, 440
MflI RGATCY 1 cut(s) 399
MhlI GDGCHC 2 cut(s) 348, 448
MluCI AATT 2 cut(s) 62, 510
MluI ACGCGT 1 cut(s) 378
MlyI GAGTC 1 cut(s) 498
MmeI TCCRAC 2 cut(s) 253, 345
MnlI CCTC 6 cut(s) 42, 108, 122, 294, 334, 450
Mph1103I ATGCAT 1 cut(s) 14
MroXI GAANNNNTTC 1 cut(s) 278
MseI TTAA 1 cut(s) 59
MspI CCGG 6 cut(s) 135, 153, 326, 423, 432, 454
MspR9I CCNGG 4 cut(s) 135, 307, 326, 424
MvaI CCWGG 1 cut(s) 307
MvnI CGCG 2 cut(s) 68, 380
MwoI GCNNNNNNNGC 2 cut(s) 428, 470
NciI CCSGG 3 cut(s) 135, 326, 424
NcoI CCATGG 1 cut(s) 89
NdeII GATC 2 cut(s) 147, 399
NlaIII CATG 5 cut(s) 12, 16, 93, 268, 352
NlaIV GGNNCC 5 cut(s) 86, 133, 240, 260, 504
NmeAIII GCCGAG 1 cut(s) 140
NsiI ATGCAT 1 cut(s) 14
NspI RCATGY 2 cut(s) 12, 268
PaeI GCATGC 1 cut(s) 12
PagI TCATGA 1 cut(s) 348
PciSI GCTCTTC 1 cut(s) 453
PdmI GAANNNNTTC 1 cut(s) 278
PflMI CCANNNNNTGG 1 cut(s) 235
PleI GAGTC 1 cut(s) 497
PpsI GAGTC 1 cut(s) 497
Psp1406I AACGTT 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 305
PspFI CCCAGC 1 cut(s) 498
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 5 cut(s) 86, 133, 240, 260, 504
PspPI GGNCC 4 cut(s) 131, 258, 303, 415
PsuI RGATCY 1 cut(s) 399
RsaI GTAC 4 cut(s) 71, 269, 287, 383
RsaNI GTAC 4 cut(s) 70, 268, 286, 382
SapI GCTCTTC 1 cut(s) 453
SaqAI TTAA 1 cut(s) 59
Sau3AI GATC 2 cut(s) 147, 399
Sau96I GGNCC 4 cut(s) 131, 258, 303, 415
SchI GAGTC 1 cut(s) 498
ScrFI CCNGG 4 cut(s) 135, 307, 326, 424
SduI GDGCHC 2 cut(s) 348, 448
SetI ASST 4 cut(s) 80, 124, 193, 345
SfaNI GCATC 1 cut(s) 6
SinI GGWCC 1 cut(s) 258
SphI GCATGC 1 cut(s) 12
Sse9I AATT 2 cut(s) 62, 510
SsiI CCGC 1 cut(s) 262
SspMI CTAG 1 cut(s) 526
StyD4I CCNGG 4 cut(s) 133, 305, 324, 422
StyI CCWWGG 2 cut(s) 89, 198
TaaI ACNGT 3 cut(s) 143, 318, 481
TaiI ACGT 1 cut(s) 80
TaqI TCGA 1 cut(s) 299
TasI AATT 2 cut(s) 62, 510
TatI WGTACW 1 cut(s) 285
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 365
TspGWI ACGGA 1 cut(s) 231
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 1 cut(s) 62
XceI RCATGY 2 cut(s) 12, 268
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 1 cut(s) 526
Zsp2I ATGCAT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.