Rorug06G0410100

Purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007589
Physical Location & Seq
Reverse (-)
55244712 .. 55245937
1226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0410100.1

Sequence Viewer

Length: 648 bp
ATGGTGATCGAGGAGGAGAAATTAGAGGAGGAGGAAGTCATAGATGAATGCAAGACATTCTACTTTGCAGGGAAGGAGACAACTGCCAATATCTCAACCTGGGCTCTTCTCCTTCTGGCAAAGCATCAGGAATGGCAAGTCAAAGCTCGAGAAGAAGTACTACGGATTTGCAGAGAGAGTGGACTTCCAATCGCACAGAATTTGAACAACCTTAAGATTGTGACTATGATAATCAATGAAACGCTGCTGCTTTACCCTCCAGCCCCATTTATAATGAGGGAAACACTAACAAGGGTTAAGCTAGGTGGTAGTCCTGGCCTCGACCTTCCTGCTGGTACACAGCTCTATTCAGCCTTGATTGCTTTGCAACACGACACAGAGATTTGGGGAGTGGATGCTAGTGAATTCAATCCACTGAGATTTAACGAGCCTCGGAAGCATCTAGCTTCACACTTCCCATTTGGGTTGGGACCTAGAATCTGTGTAGCTCAGAATTTTGCAATGACCGAGCTAAAAGTAATCTTAGCCATAATCGTTCAGCATTGTTCTTTCACAGTGTCGCCAACTTATGTTCATGCCCCAGTTATGTCTGTAAATGTTCAGCCTCAATACGGTGCTCATACCCTCTTTAGCAGGATTTCCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323
Pfam Domains
Protein Families
Metallophos

Protein Analysis

215

Amino Acids

24.17

Weight (kDa)

5.81

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 6 - 189 8e-49 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 272
AcsI RAATTY 3 cut(s) 199, 404, 493
AfaI GTAC 2 cut(s) 159, 337
AfiI CCNNNNNNNGG 1 cut(s) 611
AflII CTTAAG 1 cut(s) 212
AgsI TTSAA 2 cut(s) 205, 409
AjnI CCWGG 2 cut(s) 98, 313
AluBI AGCT 6 cut(s) 146, 301, 343, 446, 488, 511
AluI AGCT 6 cut(s) 146, 301, 343, 446, 488, 511
Alw21I GWGCWC 1 cut(s) 619
Alw26I GTCTC 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 1 cut(s) 316
ApeKI GCWGC 2 cut(s) 244, 247
ApoI RAATTY 3 cut(s) 199, 404, 493
AspS9I GGNCC 1 cut(s) 470
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 1 cut(s) 470
BanII GRGCYC 1 cut(s) 106
BarI GAAGNNNNNNTAC 2 cut(s) 144, 176
Bbv12I GWGCWC 1 cut(s) 619
BbvI GCAGC 2 cut(s) 231, 234
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BciT130I CCWGG 2 cut(s) 100, 315
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 4 cut(s) 302, 399, 443, 474
BfrI CTTAAG 1 cut(s) 212
BisI GCNGC 2 cut(s) 245, 248
BlsI GCNGC 2 cut(s) 246, 249
BmcAI AGTACT 1 cut(s) 159
Bme1390I CCNGG 2 cut(s) 100, 315
Bme18I GGWCC 1 cut(s) 470
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 470
BmiI GGNNCC 1 cut(s) 471
BmrFI CCNGG 2 cut(s) 100, 315
BmrI ACTGGG 1 cut(s) 575
BmsI GCATC 3 cut(s) 133, 385, 448
BmuI ACTGGG 1 cut(s) 575
BpmI CTGGAG 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 99, 431
Bsc4I CCNNNNNNNGG 1 cut(s) 611
Bse1I ACTGG 2 cut(s) 581, 642
Bse3DI GCAATG 1 cut(s) 507
BseBI CCWGG 2 cut(s) 100, 315
BseDI CCNNGG 2 cut(s) 99, 431
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 1 cut(s) 611
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 2 cut(s) 407, 503
BseNI ACTGG 2 cut(s) 581, 642
BseRI GAGGAG 4 cut(s) 26, 29, 41, 44
BseXI GCAGC 2 cut(s) 231, 234
BshFI GGCC 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 619
BsiHKCI CYCGRG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 483
BslI CCNNNNNNNGG 1 cut(s) 611
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 483
BsmI GAATGC 1 cut(s) 53
BsnI GGCC 1 cut(s) 318
BsoBI CYCGRG 1 cut(s) 147
Bsp1286I GDGCHC 2 cut(s) 106, 619
Bsp143I GATC 1 cut(s) 6
BspANI GGCC 1 cut(s) 318
BspCNI CTCAG 2 cut(s) 408, 502
BspLI GGNNCC 1 cut(s) 471
BspQI GCTCTTC 1 cut(s) 111
BspTI CTTAAG 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 507
BsrI ACTGG 2 cut(s) 581, 642
BssECI CCNNGG 2 cut(s) 99, 431
BssMI GATC 1 cut(s) 6
Bst2UI CCWGG 2 cut(s) 100, 315
Bst4CI ACNGT 2 cut(s) 556, 614
Bst6I CTCTTC 1 cut(s) 111
BstAFI CTTAAG 1 cut(s) 212
BstDEI CTNAG 3 cut(s) 416, 489, 523
BstF5I GGATG 1 cut(s) 400
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 2 cut(s) 359, 436
BstNI CCWGG 2 cut(s) 100, 315
BstSCI CCNGG 2 cut(s) 98, 313
BstV1I GCAGC 2 cut(s) 231, 234
BsuRI GGCC 1 cut(s) 318
BtsCI GGATG 1 cut(s) 400
BtsIMutI CAGTG 2 cut(s) 413, 561
Cfr13I GGNCC 1 cut(s) 470
Csp6I GTAC 2 cut(s) 158, 336
CviAII CATG 1 cut(s) 575
CviQI GTAC 2 cut(s) 158, 336
DdeI CTNAG 3 cut(s) 416, 489, 523
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 470
EcoRI GAATTC 1 cut(s) 404
EcoRII CCWGG 2 cut(s) 98, 313
EcoT38I GRGCYC 1 cut(s) 106
FaeI CATG 1 cut(s) 578
FaiI YATR 8 cut(s) 41, 227, 272, 530, 570, 576, 587, 621
FaqI GGGAC 1 cut(s) 483
FatI CATG 1 cut(s) 574
Fnu4HI GCNGC 2 cut(s) 245, 248
FokI GGATG 1 cut(s) 407
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 2 cut(s) 245, 248
FspBI CTAG 4 cut(s) 302, 399, 443, 474
GluI GCNGC 2 cut(s) 245, 248
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 1 cut(s) 318
Hin1II CATG 1 cut(s) 578
HinfI GANTC 1 cut(s) 477
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 182, 338
Hpy188I TCNGA 2 cut(s) 435, 492
Hpy188III TCNNGA 2 cut(s) 128, 149
Hpy8I GTNNAC 2 cut(s) 182, 338
HpyAV CCTTC 3 cut(s) 67, 122, 335
HpyCH4III ACNGT 2 cut(s) 556, 614
HpyCH4V TGCA 5 cut(s) 51, 68, 171, 367, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 436
HpyF3I CTNAG 3 cut(s) 416, 489, 523
Hsp92II CATG 1 cut(s) 578
Kzo9I GATC 1 cut(s) 6
LguI GCTCTTC 1 cut(s) 111
Lsp1109I GCAGC 2 cut(s) 231, 234
LweI GCATC 3 cut(s) 133, 385, 448
MaeI CTAG 4 cut(s) 302, 399, 443, 474
MaeIII GTNAC 1 cut(s) 220
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 2 cut(s) 98, 164
MhlI GDGCHC 2 cut(s) 106, 619
MluCI AATT 4 cut(s) 20, 199, 404, 493
MseI TTAA 3 cut(s) 213, 297, 423
MspCI CTTAAG 1 cut(s) 212
MspR9I CCNGG 2 cut(s) 100, 315
Mva1269I GAATGC 1 cut(s) 53
MvaI CCWGG 2 cut(s) 100, 315
MwoI GCNNNNNNNGC 2 cut(s) 359, 436
NdeII GATC 1 cut(s) 6
NlaIII CATG 1 cut(s) 578
NlaIV GGNNCC 1 cut(s) 471
NmuCI GTSAC 1 cut(s) 220
PaeR7I CTCGAG 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 111
PctI GAATGC 1 cut(s) 53
PfeI GAWTC 1 cut(s) 477
PkrI GCNGC 2 cut(s) 246, 249
PpuMI RGGWCCY 1 cut(s) 470
PsiI TTATAA 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 470
Psp6I CCWGG 2 cut(s) 98, 313
PspGI CCWGG 2 cut(s) 98, 313
PspN4I GGNNCC 1 cut(s) 471
PspPI GGNCC 1 cut(s) 470
PspPPI RGGWCCY 1 cut(s) 470
RsaI GTAC 2 cut(s) 159, 337
RsaNI GTAC 2 cut(s) 158, 336
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 3 cut(s) 213, 297, 423
SatI GCNGC 2 cut(s) 245, 248
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 470
ScaI AGTACT 1 cut(s) 159
ScrFI CCNGG 2 cut(s) 100, 315
SduI GDGCHC 2 cut(s) 106, 619
SfaNI GCATC 3 cut(s) 133, 385, 448
Sfr274I CTCGAG 1 cut(s) 147
SinI GGWCC 1 cut(s) 470
SlaI CTCGAG 1 cut(s) 147
SmlI CTYRAG 2 cut(s) 147, 212
SmoI CTYRAG 2 cut(s) 147, 212
Sse9I AATT 4 cut(s) 20, 199, 404, 493
SspMI CTAG 4 cut(s) 302, 399, 443, 474
StyD4I CCNGG 2 cut(s) 98, 313
TaaI ACNGT 2 cut(s) 556, 614
TaqI TCGA 3 cut(s) 9, 148, 321
TaqII GACCGA 1 cut(s) 521
TasI AATT 4 cut(s) 20, 199, 404, 493
TatI WGTACW 1 cut(s) 157
TfiI GAWTC 1 cut(s) 477
Tru1I TTAA 3 cut(s) 213, 297, 423
Tru9I TTAA 3 cut(s) 213, 297, 423
TscAI CASTG 2 cut(s) 420, 561
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 2 cut(s) 244, 247
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 3 cut(s) 60, 252, 563
TspGWI ACGGA 1 cut(s) 178
TspRI CASTG 2 cut(s) 420, 561
Vha464I CTTAAG 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 470
XapI RAATTY 3 cut(s) 199, 404, 493
XhoI CTCGAG 1 cut(s) 147
XspI CTAG 4 cut(s) 302, 399, 443, 474
ZrmI AGTACT 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.