Rmu_sc0006282.1_g000008

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006282.1
OG0007968
Physical Location & Seq
Reverse (-)
41994 .. 43763
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 912 bp
atgagaagaagaggaaaagatggtaatgatgggaccatttcagcctttattgcattagcaaactcttcaagaacccattttctctctgagttcctctgcttgaggaatttggagaatctggccagatacagaaagtatcattcaatttttggaacaatggaacttcctgtggttttcatggctgtactggttctgtgttcatcagcagcatatgctcaaactgccccatctccctcgctaacccctactccagcgccagccccagcccccgaattcgtgaacctcacagagttgttctctgtggctggcccattcaacaccttccttggctaccttgagtcaaccaaagtgattgagacattccaagaccaagccaacaagactgaggaaggcataaccatctttgtcccaaaagatagtgcttttgcatctcttaaaaaaccttctctgtccaatctcaccgctgaccagctcaaatctctgtttctattccatgctttgtcacattactactctttggccgatttcagaaacctcagcaatatgagccccgtggctacaatggccgggggacaatacagtttgaacttcactgatgtttcaggcactgcgcatcttacctcgggatggtcagtcacaaaagtgagcagcagtgtgcattccacagaccctgttgctgtttaccaagttgacaaggttcttcttccggaggcaattttcggtactgacattcccccaaccgcagccccagcaccagctccggaaattgctccagctgcagatgctccaaaagctgcagacagtgatgacttgtctccaggatcctcaccagataaatcttcttcttacagaattatgagttggggtcgattgattttggcaatctcaggtggactggtccttttcttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

303

Amino Acids

32.45

Weight (kDa)

5.86

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 104 - 236 1.4e-21 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 612
AccIII TCCGGA 2 cut(s) 706, 760
AciI CCGC 2 cut(s) 462, 741
AclWI GGATC 2 cut(s) 816, 829
AcoI YGGCCR 3 cut(s) 120, 519, 564
AcsI RAATTY 2 cut(s) 106, 272
AfaI GTAC 2 cut(s) 186, 724
AfiI CCNNNNNNNGG 1 cut(s) 627
AgsI TTSAA 4 cut(s) 69, 144, 316, 586
AjnI CCWGG 1 cut(s) 817
AjuI GAANNNNNNNTTGG 2 cut(s) 844, 876
AleI CACNNNNGTG 1 cut(s) 641
AluBI AGCT 4 cut(s) 472, 758, 776, 794
AluI AGCT 4 cut(s) 472, 758, 776, 794
Alw26I GTCTC 2 cut(s) 350, 819
AlwI GGATC 2 cut(s) 816, 829
AlwNI CAGNNNCTG 2 cut(s) 608, 671
Ama87I CYCGRG 1 cut(s) 622
Aor13HI TCCGGA 2 cut(s) 706, 760
AoxI GGCC 4 cut(s) 120, 307, 519, 564
ApeKI GCWGC 5 cut(s) 206, 648, 743, 776, 794
ApoI RAATTY 2 cut(s) 106, 272
AspLEI GCGC 2 cut(s) 256, 613
AspS9I GGNCC 3 cut(s) 33, 308, 898
AsuC2I CCSGG 1 cut(s) 568
AsuHPI GGTGA 2 cut(s) 451, 819
AvaI CYCGRG 1 cut(s) 622
AvaII GGWCC 2 cut(s) 33, 898
BalI TGGCCA 1 cut(s) 122
BamHI GGATCC 1 cut(s) 821
BanII GRGCYC 1 cut(s) 551
BbvCI CCTCAGC 1 cut(s) 536
BbvI GCAGC 5 cut(s) 218, 660, 755, 763, 781
BccI CCATC 5 cut(s) 14, 23, 235, 407, 621
BciT130I CCWGG 1 cut(s) 819
BcnI CCSGG 1 cut(s) 568
BcoDI GTCTC 2 cut(s) 350, 819
BfmI CTRYAG 2 cut(s) 777, 795
BfoI RGCGCY 1 cut(s) 257
BisI GCNGC 5 cut(s) 207, 649, 744, 777, 795
BlsI GCNGC 5 cut(s) 208, 650, 745, 778, 796
Bme1390I CCNGG 2 cut(s) 568, 819
Bme18I GGWCC 2 cut(s) 33, 898
BmeT110I CYCGRG 1 cut(s) 622
BmgT120I GGNCC 3 cut(s) 33, 308, 898
BmiI GGNNCC 2 cut(s) 34, 823
BmrFI CCNGG 2 cut(s) 568, 819
BmsI GCATC 3 cut(s) 437, 622, 772
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpmI CTGGAG 3 cut(s) 234, 756, 801
Bpu10I CCTNAGC 1 cut(s) 536
BpuEI CTTGAG 2 cut(s) 121, 356
BpuMI CCSGG 1 cut(s) 568
BsaJI CCNNGG 4 cut(s) 325, 552, 567, 621
BsaWI WCCGGW 2 cut(s) 706, 760
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bsc4I CCNNNNNNNGG 1 cut(s) 627
Bse1I ACTGG 2 cut(s) 192, 900
BseAI TCCGGA 2 cut(s) 706, 760
BseBI CCWGG 1 cut(s) 819
BseDI CCNNGG 4 cut(s) 325, 552, 567, 621
BseGI GGATG 1 cut(s) 632
BseLI CCNNNNNNNGG 1 cut(s) 627
BseMII CTCAG 4 cut(s) 78, 375, 550, 900
BseNI ACTGG 2 cut(s) 192, 900
BseXI GCAGC 5 cut(s) 218, 660, 755, 763, 781
BseYI CCCAGC 2 cut(s) 262, 748
BshFI GGCC 4 cut(s) 122, 309, 521, 566
BsiHKCI CYCGRG 1 cut(s) 622
BsiSI CCGG 3 cut(s) 567, 707, 761
BslFI GGGAC 3 cut(s) 46, 392, 585
BslI CCNNNNNNNGG 1 cut(s) 627
BsmAI GTCTC 2 cut(s) 350, 819
BsmFI GGGAC 3 cut(s) 46, 392, 585
BsmI GAATGC 1 cut(s) 658
BsnI GGCC 4 cut(s) 122, 309, 521, 566
BsoBI CYCGRG 1 cut(s) 622
Bsp1286I GDGCHC 1 cut(s) 551
Bsp13I TCCGGA 2 cut(s) 706, 760
Bsp143I GATC 1 cut(s) 821
BspACI CCGC 2 cut(s) 462, 741
BspANI GGCC 4 cut(s) 122, 309, 521, 566
BspCNI CTCAG 4 cut(s) 79, 376, 549, 899
BspEI TCCGGA 2 cut(s) 706, 760
BspLI GGNNCC 2 cut(s) 34, 823
BspMAI CTGCAG 2 cut(s) 781, 799
BspPI GGATC 2 cut(s) 816, 829
BsrI ACTGG 2 cut(s) 192, 900
BssECI CCNNGG 4 cut(s) 325, 552, 567, 621
BssMI GATC 1 cut(s) 821
BssT1I CCWWGG 1 cut(s) 325
Bst2UI CCWGG 1 cut(s) 819
Bst4CI ACNGT 2 cut(s) 581, 803
Bst6I CTCTTC 2 cut(s) 4, 70
BstAPI GCANNNNNTGC 1 cut(s) 212
BstC8I GCNNGC 2 cut(s) 258, 307
BstDEI CTNAG 4 cut(s) 87, 384, 536, 886
BstDSI CCRYGG 1 cut(s) 552
BstF5I GGATG 1 cut(s) 632
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 2 cut(s) 256, 613
BstKTI GATC 1 cut(s) 824
BstMAI GTCTC 2 cut(s) 350, 819
BstMBI GATC 1 cut(s) 821
BstMWI GCNNNNNNNGC 9 cut(s) 50, 212, 221, 546, 563, 749, 776, 782, 791
BstNI CCWGG 1 cut(s) 819
BstSCI CCNGG 2 cut(s) 566, 817
BstSFI CTRYAG 2 cut(s) 777, 795
BstV1I GCAGC 5 cut(s) 218, 660, 755, 763, 781
BstX2I RGATCY 1 cut(s) 821
BstYI RGATCY 1 cut(s) 821
BsuRI GGCC 4 cut(s) 122, 309, 521, 566
BtgI CCRYGG 1 cut(s) 552
BtsCI GGATG 1 cut(s) 632
BtsI GCAGTG 2 cut(s) 606, 658
BtsIMutI CAGTG 4 cut(s) 591, 606, 658, 808
Cac8I GCNNGC 2 cut(s) 258, 307
CaiI CAGNNNCTG 2 cut(s) 608, 671
CfoI GCGC 2 cut(s) 256, 613
Cfr13I GGNCC 3 cut(s) 33, 308, 898
Csp6I GTAC 2 cut(s) 185, 723
CviAII CATG 2 cut(s) 178, 494
CviQI GTAC 2 cut(s) 185, 723
DdeI CTNAG 4 cut(s) 87, 384, 536, 886
DpnI GATC 1 cut(s) 823
DpnII GATC 1 cut(s) 821
EaeI YGGCCR 3 cut(s) 120, 519, 564
Eam1104I CTCTTC 2 cut(s) 4, 70
EarI CTCTTC 2 cut(s) 4, 70
Eco130I CCWWGG 1 cut(s) 325
Eco24I GRGCYC 1 cut(s) 551
Eco47I GGWCC 2 cut(s) 33, 898
Eco88I CYCGRG 1 cut(s) 622
EcoRI GAATTC 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 817
EcoT14I CCWWGG 1 cut(s) 325
EcoT38I GRGCYC 1 cut(s) 551
ErhI CCWWGG 1 cut(s) 325
FaeI CATG 2 cut(s) 181, 497
FaiI YATR 7 cut(s) 179, 211, 213, 395, 495, 545, 857
FaqI GGGAC 3 cut(s) 46, 392, 585
FatI CATG 2 cut(s) 177, 493
FauNDI CATATG 1 cut(s) 211
Fnu4HI GCNGC 5 cut(s) 207, 649, 744, 777, 795
FokI GGATG 1 cut(s) 639
FriOI GRGCYC 1 cut(s) 551
Fsp4HI GCNGC 5 cut(s) 207, 649, 744, 777, 795
FspI TGCGCA 1 cut(s) 612
GlaI GCGC 2 cut(s) 255, 612
GluI GCNGC 5 cut(s) 207, 649, 744, 777, 795
GsaI CCCAGC 2 cut(s) 266, 752
GsuI CTGGAG 3 cut(s) 234, 756, 801
HaeII RGCGCY 1 cut(s) 257
HaeIII GGCC 4 cut(s) 122, 309, 521, 566
HapII CCGG 3 cut(s) 567, 707, 761
HhaI GCGC 2 cut(s) 256, 613
Hin1II CATG 2 cut(s) 181, 497
Hin6I GCGC 2 cut(s) 254, 611
HinP1I GCGC 2 cut(s) 254, 611
HincII GTYRAC 2 cut(s) 342, 691
HindII GTYRAC 2 cut(s) 342, 691
HinfI GANTC 2 cut(s) 115, 338
HpaII CCGG 3 cut(s) 567, 707, 761
HphI GGTGA 2 cut(s) 451, 819
Hpy166II GTNNAC 5 cut(s) 280, 342, 682, 691, 893
Hpy188I TCNGA 2 cut(s) 88, 530
Hpy188III TCNNGA 5 cut(s) 69, 277, 624, 707, 761
Hpy8I GTNNAC 5 cut(s) 280, 342, 682, 691, 893
HpyAV CCTTC 3 cut(s) 331, 383, 453
HpyCH4III ACNGT 2 cut(s) 581, 803
HpyCH4V TGCA 5 cut(s) 53, 428, 658, 779, 797
HpyF10VI GCNNNNNNNGC 9 cut(s) 50, 212, 221, 546, 563, 749, 776, 782, 791
HpyF3I CTNAG 4 cut(s) 87, 384, 536, 886
Hsp92II CATG 2 cut(s) 181, 497
HspAI GCGC 2 cut(s) 254, 611
Kpn2I TCCGGA 2 cut(s) 706, 760
Kzo9I GATC 1 cut(s) 821
LmnI GCTCC 3 cut(s) 763, 775, 790
Lsp1109I GCAGC 5 cut(s) 218, 660, 755, 763, 781
LweI GCATC 3 cut(s) 437, 622, 772
MaeIII GTNAC 2 cut(s) 501, 634
MalI GATC 1 cut(s) 823
MboI GATC 1 cut(s) 821
MboII GAAGA 7 cut(s) 18, 21, 57, 692, 695, 831, 834
MflI RGATCY 1 cut(s) 821
MhlI GDGCHC 1 cut(s) 551
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 6 cut(s) 106, 144, 272, 714, 765, 852
MluNI TGGCCA 1 cut(s) 122
MlyI GAGTC 1 cut(s) 347
Mox20I TGGCCA 1 cut(s) 122
MroI TCCGGA 2 cut(s) 706, 760
MscI TGGCCA 1 cut(s) 122
MseI TTAA 1 cut(s) 435
MslI CAYNNNNRTG 1 cut(s) 641
Msp20I TGGCCA 1 cut(s) 122
MspA1I CMGCKG 2 cut(s) 464, 776
MspI CCGG 3 cut(s) 567, 707, 761
MspR9I CCNGG 2 cut(s) 568, 819
Mva1269I GAATGC 1 cut(s) 658
MvaI CCWGG 1 cut(s) 819
MwoI GCNNNNNNNGC 9 cut(s) 50, 212, 221, 546, 563, 749, 776, 782, 791
NciI CCSGG 1 cut(s) 568
NdeI CATATG 1 cut(s) 211
NdeII GATC 1 cut(s) 821
NlaIII CATG 2 cut(s) 181, 497
NlaIV GGNNCC 2 cut(s) 34, 823
NmuCI GTSAC 2 cut(s) 501, 634
NsbI TGCGCA 1 cut(s) 612
OliI CACNNNNGTG 1 cut(s) 641
PctI GAATGC 1 cut(s) 658
PfeI GAWTC 1 cut(s) 115
PfoI TCCNGGA 1 cut(s) 817
PkrI GCNGC 5 cut(s) 208, 650, 745, 778, 796
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
Psp6I CCWGG 1 cut(s) 817
PspFI CCCAGC 2 cut(s) 262, 748
PspGI CCWGG 1 cut(s) 817
PspN4I GGNNCC 2 cut(s) 34, 823
PspPI GGNCC 3 cut(s) 33, 308, 898
PstI CTGCAG 2 cut(s) 781, 799
PstNI CAGNNNCTG 2 cut(s) 608, 671
PsuI RGATCY 1 cut(s) 821
PvuII CAGCTG 1 cut(s) 776
RsaI GTAC 2 cut(s) 186, 724
RsaNI GTAC 2 cut(s) 185, 723
RseI CAYNNNNRTG 1 cut(s) 641
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 5 cut(s) 207, 649, 744, 777, 795
Sau3AI GATC 1 cut(s) 821
Sau96I GGNCC 3 cut(s) 33, 308, 898
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 2 cut(s) 568, 819
SduI GDGCHC 1 cut(s) 551
SfaNI GCATC 3 cut(s) 437, 622, 772
SfcI CTRYAG 2 cut(s) 777, 795
SinI GGWCC 2 cut(s) 33, 898
SmiMI CAYNNNNRTG 1 cut(s) 641
SmlI CTYRAG 2 cut(s) 100, 335
SmoI CTYRAG 2 cut(s) 100, 335
Sse9I AATT 6 cut(s) 106, 144, 272, 714, 765, 852
SsiI CCGC 2 cut(s) 462, 741
StyD4I CCNGG 2 cut(s) 566, 817
StyI CCWWGG 1 cut(s) 325
TaaI ACNGT 2 cut(s) 581, 803
TaqI TCGA 1 cut(s) 868
TasI AATT 6 cut(s) 106, 144, 272, 714, 765, 852
TatI WGTACW 1 cut(s) 184
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 4 cut(s) 598, 613, 658, 808
TseFI GTSAC 2 cut(s) 501, 634
TseI GCWGC 5 cut(s) 206, 648, 743, 776, 794
Tsp45I GTSAC 2 cut(s) 501, 634
TspDTI ATGAA 2 cut(s) 166, 189
TspRI CASTG 4 cut(s) 598, 613, 658, 808
VpaK11BI GGWCC 2 cut(s) 33, 898
XapI RAATTY 2 cut(s) 106, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.