Rmu_sc0006339.1_g000005

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006339.1
OG0011365
Physical Location & Seq
Reverse (-)
17003 .. 23311
6309 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2610 bp
atggctcagcctctcgtgaagaaagacgacgatcgcgacgatgaagagtactctccatttctggggattgaaaagggggctgttcttcaagaagctagggtctttaatgatcctcagctagacgcaagaagatgctctcaggttatcacaaagcttctgtatctactgaatcagggtgaaaccttcactaaggttgaagctacagaagttttcttttcggtgaccaagcttttccagtcgagagatataggattgaggagaatggtttatctgatgataaaagagttatcgccttctgctgatgaggttattattgtgacaagctccctaatgaaggacatgaatagtaaaactgatatgtatcgggccaatgccattcgtgtgctttgtcggattacggatggaacccttcttacccagattgagcggtatttgaaacaagccattgttgacaagaatccagtggttgcgagtgcagctctagttagtgggatccatctactccagactaacccagagattgttaaaaggtggagtaatgaggttcaggaagctgtccagtcaagggcagcccttgtacagtttcatgcactggctttacttcatcagataagacaaaatgaccgtcttgctgttagcaagttggttaccagcttgacaaggggcactgtccgttctccattagctcaatgcctgttgatccgctatactagtcaggtaatccgggagtccgctgggagtacacaagcaggtgaccgtcctttttatgattatctcgagggttgcctgcggcacaaagcagagatggtaatttttgaagctgccagagcaattacagagctccatggtgtgaccaacagagaattgactccagctatcaccgttcttcagctatttttaagttcttcaaagccagtgttaagatttgctgcggtccgcaccctaaacaaggtttgccttatttgttttcttctaagcattgccacacttgcgatcaccacacttctgaagacaggaaatgaatcaagtgtggatcgcttgatgaagcagataactaacttcatgtcagatattgctgatgaattcaaaattgtagttgtggaagccattagatctctgtgtttgaagtttccattgaagtatagagctctcatgaacttcctaagcaacattctccgagaagaaggcgggtttgagtacaaaaaagcaattgttgactcaattgtgattctaattagagatatcccagaggcaaaagaaagtggcttgcttcatctctgtgagttcattgaagattgtgaatttacctacctttctactcagatactccactttttggggattgaagggccaagaacctcggatccaagcaaatacatacggtacatttataatcgagtgcatcttgagaatgccactgtccgggccagtgctgtgagcacattagccaaatttggtgccatggttgattcattgaagccccgagtgtttattctgttaagaaggtgcctctttgacagtgatgatgaggttcgtgatagggcaacactctatcttagtacacttggaggggatggttgtgttgttgagactgaccaggatgtaaaggactttctctttgggtctctggatgtccccctcgttaatcttgagacaagtttgaagaattatgaggcttcagaagaaccatttgacgtcaattctgtacccaaggagattaagtctcagccacttgctgagaaaaaagcccagagtaaaaagccaactggtctgggtgctcctccaagtggccctgcatccacagtcgatgcttatgagaagatgctttcttctattccagagttttcaaactttgggaaacttttcaagtcctcagcacctgtggagttgacagaggcagaaaccgaatatgcagttaacgttgtcaagcacatttttgatagacatgttgtgttccagtacaactgcaccaacaccattcccgagcaattactggaaaatgttattgttgctgttgatgcttctgatgcagaggagtttactgaagtgggatccaagcctctcaggtctcttccttatgatacacctggccagacctttttggcgtttgagaagccagaaggtgtccttgcagttggaaaattttcaaacacattgagattcattgttaaagaggttgatccaaccactggagaggcagaggaagatggtgtagaagatgaataccagctggaggaccttgaggtggttgctgctgattatattttgaaggatcaagtactcaatttcagaaatgcatgggaaaccatgggcccagattgtgagcgtgtagatgaatatggcctgggccaaagggagagcttgaatgaagcagtctctgctgtcatcagcctccttggaatgcagccctgtgagggcacggaggttattgccagcaactcaaggtcccacacttgcttattgactggtgtatacataggcaatgtgaaggtcctcgtgcggttgtcttttggaattgatagttcaaaggaggttgcgatgaagcttgtggttagatctgaggatgtgactgtcagcgatgccatccatgagattgtggccagcggctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Adaptin_N COP-gamma_platf Coatomer_g_Cpla

Protein Analysis

869

Amino Acids

96.8

Weight (kDa)

5.15

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adaptin_N PF01602 26 - 522 3.5e-125 Adaptin N terminal region
Cnd1 PF12717 122 - 217 1.5e-06 non-SMC mitotic condensation complex subunit 1
COP-gamma_platf PF08752 604 - 749 1e-54 Coatomer gamma subunit appendage platform subdomain
Coatomer_g_Cpla PF16381 752 - 866 4.9e-34 Coatomer subunit gamma-1 C-terminal appendage platform
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34450
fragaria_vesca FvH4_2g08660 FvH4_2g08660 FvH4_2g08660
malus_domestica MD05G1067500.v1.1 MD10G1077400.v1.1
prunus_persica Prupe.8G098200_v2.0.a1
pyrus_communis pycom05g05860 pycom10g06040
rosa_chinensis RchiOBHm_Chr6g0264051
rosa_laevigata RLG00000014293
rosa_multiflora Rmu_sc0006339.1_g000005
rosa_roxburghii Rroxscaffold_176G00431390 Rroxscaffold_7G00203630
rosa_rugosa Rorug06G0007600
rosa_samantha Rh6AG128800 Rh6BG124900 Rh6CG123600 Rh6DG110600
rosa_wichuraiana Rw6G011130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1392
AarI CACCTGC 1 cut(s) 740
AatII GACGTC 1 cut(s) 1698
Acc36I ACCTGC 1 cut(s) 740
AccB1I GGYRCC 2 cut(s) 1457, 1506
AccB7I CCANNNNNTGG 2 cut(s) 1336, 2189
AccBSI CCGCTC 1 cut(s) 427
AccI GTMKAC 1 cut(s) 2472
AccII CGCG 1 cut(s) 36
AciI CCGC 9 cut(s) 427, 703, 732, 790, 932, 937, 1188, 2500, 2604
AclI AACGTT 1 cut(s) 1920
AcoI YGGCCR 2 cut(s) 2089, 2598
AcsI RAATTY 4 cut(s) 1082, 1301, 1451, 2141
AcuI CTGAAG 4 cut(s) 872, 1028, 1662, 2064
AcyI GRCGYC 1 cut(s) 1695
AfaI GTAC 9 cut(s) 50, 579, 742, 1199, 1385, 1561, 1707, 1961, 2280
AflIII ACRYGT 1 cut(s) 1945
AhlI ACTAGT 1 cut(s) 710
AjnI CCWGG 3 cut(s) 1596, 2086, 2343
AloI GAACNNNNNNTCC 2 cut(s) 1348, 1380
Alw21I GWGCWC 4 cut(s) 843, 1150, 1442, 1780
Alw26I GTCTC 6 cut(s) 1583, 1629, 1646, 1728, 2073, 2380
AlwNI CAGNNNCTG 2 cut(s) 1880, 2378
Ama87I CYCGRG 3 cut(s) 776, 1482, 1982
AoxI GGCC 9 cut(s) 366, 1349, 1425, 1789, 2089, 2311, 2341, 2347, 2598
ApaI GGGCCC 1 cut(s) 2315
ApeKI GCWGC 6 cut(s) 476, 569, 821, 929, 2252, 2404
ApoI RAATTY 4 cut(s) 1082, 1301, 1451, 2141
ArsI GACNNNNNNTTYG 4 cut(s) 610, 642, 1601, 1633
Asp700I GAANNNNTTC 2 cut(s) 1862, 2143
AsuC2I CCSGG 2 cut(s) 725, 1424
AsuHPI GGTGA 5 cut(s) 188, 232, 764, 871, 988
AvaI CYCGRG 3 cut(s) 776, 1482, 1982
AvaII GGWCC 4 cut(s) 934, 2236, 2445, 2491
BaeGI GKGCMC 3 cut(s) 668, 2315, 2420
BalI TGGCCA 2 cut(s) 2091, 2600
BamHI GGATCC 3 cut(s) 492, 1363, 2051
BanI GGYRCC 2 cut(s) 1457, 1506
BanII GRGCYC 3 cut(s) 843, 1150, 2315
BauI CACGAG 2 cut(s) 14, 2495
BbsI GAAGAC 1 cut(s) 1016
Bbv12I GWGCWC 4 cut(s) 843, 1150, 1442, 1780
BbvCI CCTCAGC 2 cut(s) 114, 1873
BbvI GCAGC 6 cut(s) 488, 581, 808, 916, 2239, 2416
BccI CCATC 6 cut(s) 395, 504, 799, 1568, 2201, 2591
BciT130I CCWGG 3 cut(s) 1598, 2088, 2345
BcnI CCSGG 2 cut(s) 725, 1424
BcoDI GTCTC 6 cut(s) 1583, 1629, 1646, 1728, 2073, 2380
BcuI ACTAGT 1 cut(s) 710
BfaI CTAG 5 cut(s) 96, 119, 482, 711, 2608
BfmI CTRYAG 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 740
BglII AGATCT 2 cut(s) 1112, 2555
BisI GCNGC 8 cut(s) 477, 570, 791, 822, 930, 2253, 2405, 2605
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 8 cut(s) 478, 571, 792, 823, 931, 2254, 2406, 2606
BmcAI AGTACT 2 cut(s) 50, 2280
Bme1390I CCNGG 5 cut(s) 725, 1424, 1598, 2088, 2345
Bme18I GGWCC 4 cut(s) 934, 2236, 2445, 2491
BmeT110I CYCGRG 3 cut(s) 776, 1482, 1982
BmiI GGNNCC 8 cut(s) 406, 494, 1365, 1459, 1508, 2053, 2313, 2447
BmrFI CCNGG 5 cut(s) 725, 1424, 1598, 2088, 2345
BmsI GCATC 8 cut(s) 122, 1411, 1798, 1805, 1812, 2008, 2017, 2569
BpiI GAAGAC 1 cut(s) 1016
BplI GAGNNNNNCTC 2 cut(s) 463, 495
BpmI CTGGAG 4 cut(s) 488, 855, 2211, 2252
Bpu10I CCTNAGC 3 cut(s) 114, 1163, 1873
Bpu1102I GCTNAGC 1 cut(s) 6
BpuEI CTTGAG 4 cut(s) 1427, 1670, 2261, 2425
BpuMI CCSGG 2 cut(s) 725, 1424
BsaBI GATNNNNATC 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 1695
BsaI GGTCTC 2 cut(s) 1629, 2073
BsaJI CCNNGG 7 cut(s) 844, 1359, 1461, 1710, 2307, 2344, 2395
BsaXI ACNNNNNCTCC 2 cut(s) 1706, 1736
Bse3DI GCAATG 2 cut(s) 978, 2488
Bse8I GATNNNNATC 1 cut(s) 360
BseBI CCWGG 3 cut(s) 1598, 2088, 2345
BseDI CCNNGG 7 cut(s) 844, 1359, 1461, 1710, 2307, 2344, 2395
BseGI GGATG 7 cut(s) 406, 1579, 1606, 1636, 1796, 2569, 2583
BseJI GATNNNNATC 1 cut(s) 360
BseMI GCAATG 2 cut(s) 978, 2488
BseMII CTCAG 9 cut(s) 20, 128, 152, 1334, 1728, 1739, 1887, 2077, 2550
BseRI GAGGAG 3 cut(s) 271, 1770, 2048
BseSI GKGCMC 3 cut(s) 668, 2315, 2420
BseXI GCAGC 6 cut(s) 488, 581, 808, 916, 2239, 2416
BseYI CCCAGC 1 cut(s) 734
BsgI GTGCAG 2 cut(s) 495, 1951
Bsh1236I CGCG 1 cut(s) 36
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 9 cut(s) 368, 1351, 1427, 1791, 2091, 2313, 2343, 2349, 2600
BshNI GGYRCC 2 cut(s) 1457, 1506
BsiEI CGRYCG 1 cut(s) 34
BsiHKAI GWGCWC 4 cut(s) 843, 1150, 1442, 1780
BsiHKCI CYCGRG 3 cut(s) 776, 1482, 1982
BsiSI CCGG 2 cut(s) 724, 1423
BslFI GGGAC 2 cut(s) 1619, 2431
BsmAI GTCTC 6 cut(s) 1583, 1629, 1646, 1728, 2073, 2380
BsmFI GGGAC 2 cut(s) 1619, 2431
BsmI GAATGC 2 cut(s) 1417, 2406
BsnI GGCC 9 cut(s) 368, 1351, 1427, 1791, 2091, 2313, 2343, 2349, 2600
Bso31I GGTCTC 2 cut(s) 1629, 2073
BsoBI CYCGRG 3 cut(s) 776, 1482, 1982
Bsp120I GGGCCC 1 cut(s) 2311
Bsp1286I GDGCHC 7 cut(s) 668, 843, 1150, 1442, 1780, 2315, 2420
Bsp1407I TGTACA 1 cut(s) 577
Bsp1720I GCTNAGC 1 cut(s) 6
Bsp19I CCATGG 3 cut(s) 844, 1461, 2307
Bsp68I TCGCGA 1 cut(s) 36
BspACI CCGC 9 cut(s) 427, 703, 732, 790, 932, 937, 1188, 2500, 2604
BspANI GGCC 9 cut(s) 368, 1351, 1427, 1791, 2091, 2313, 2343, 2349, 2600
BspCNI CTCAG 9 cut(s) 19, 127, 151, 1333, 1729, 1738, 1886, 2076, 2551
BspFNI CGCG 1 cut(s) 36
BspHI TCATGA 1 cut(s) 1152
BspLI GGNNCC 8 cut(s) 406, 494, 1365, 1459, 1508, 2053, 2313, 2447
BspMI ACCTGC 1 cut(s) 740
BspT107I GGYRCC 2 cut(s) 1457, 1506
BspTNI GGTCTC 2 cut(s) 1629, 2073
BsrBI CCGCTC 1 cut(s) 427
BsrDI GCAATG 2 cut(s) 978, 2488
BsrGI TGTACA 1 cut(s) 577
BssECI CCNNGG 7 cut(s) 844, 1359, 1461, 1710, 2307, 2344, 2395
BssNAI GTATAC 1 cut(s) 2473
BssNI GRCGYC 1 cut(s) 1695
BssSI CACGAG 2 cut(s) 14, 2495
BssT1I CCWWGG 5 cut(s) 844, 1461, 1710, 2307, 2395
Bst1107I GTATAC 1 cut(s) 2473
Bst2BI CACGAG 2 cut(s) 14, 2495
Bst2UI CCWGG 3 cut(s) 1598, 2088, 2345
Bst6I CTCTTC 2 cut(s) 39, 2076
BstACI GRCGYC 1 cut(s) 1695
BstAPI GCANNNNNTGC 1 cut(s) 2378
BstAUI TGTACA 1 cut(s) 577
BstC8I GCNNGC 4 cut(s) 788, 1268, 2434, 2602
BstDSI CCRYGG 3 cut(s) 844, 1461, 2307
BstEII GGTNACC 3 cut(s) 220, 646, 752
BstENI CCTNNNNNAGG 2 cut(s) 332, 947
BstF5I GGATG 7 cut(s) 406, 1579, 1606, 1636, 1796, 2569, 2583
BstFNI CGCG 1 cut(s) 36
BstMAI GTCTC 6 cut(s) 1583, 1629, 1646, 1728, 2073, 2380
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 6 cut(s) 476, 827, 989, 2018, 2027, 2378
BstNI CCWGG 3 cut(s) 1598, 2088, 2345
BstNSI RCATGY 1 cut(s) 1949
BstPI GGTNACC 3 cut(s) 220, 646, 752
BstSCI CCNGG 5 cut(s) 723, 1422, 1596, 2086, 2343
BstSFI CTRYAG 1 cut(s) 201
BstSLI GKGCMC 3 cut(s) 668, 2315, 2420
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 6 cut(s) 488, 581, 808, 916, 2239, 2416
BstV2I GAAGAC 1 cut(s) 1016
BstX2I RGATCY 5 cut(s) 492, 1112, 1363, 2051, 2555
BstYI RGATCY 5 cut(s) 492, 1112, 1363, 2051, 2555
BstZ17I GTATAC 1 cut(s) 2473
BsuRI GGCC 9 cut(s) 368, 1351, 1427, 1791, 2091, 2313, 2343, 2349, 2600
BtgI CCRYGG 3 cut(s) 844, 1461, 2307
BtgZI GCGATG 2 cut(s) 2552, 2592
BtsCI GGATG 7 cut(s) 406, 1579, 1606, 1636, 1796, 2569, 2583
BtsIMutI CAGTG 8 cut(s) 468, 590, 666, 921, 1416, 1435, 1525, 2187
BtuMI TCGCGA 1 cut(s) 36
BveI ACCTGC 1 cut(s) 740
Cac8I GCNNGC 4 cut(s) 788, 1268, 2434, 2602
CaiI CAGNNNCTG 2 cut(s) 1880, 2378
CciI TCATGA 1 cut(s) 1152
CpoI CGGWCCG 1 cut(s) 934
CseI GACGC 1 cut(s) 131
Csp6I GTAC 9 cut(s) 49, 578, 741, 1198, 1384, 1560, 1706, 1960, 2279
CspI CGGWCCG 1 cut(s) 934
CviQI GTAC 9 cut(s) 49, 578, 741, 1198, 1384, 1560, 1706, 1960, 2279
EaeI YGGCCR 2 cut(s) 2089, 2598
Eam1104I CTCTTC 2 cut(s) 39, 2076
EarI CTCTTC 2 cut(s) 39, 2076
Ecl136II GAGCTC 2 cut(s) 841, 1148
Eco130I CCWWGG 5 cut(s) 844, 1461, 1710, 2307, 2395
Eco24I GRGCYC 3 cut(s) 843, 1150, 2315
Eco31I GGTCTC 2 cut(s) 1629, 2073
Eco32I GATATC 1 cut(s) 1243
Eco47I GGWCC 4 cut(s) 934, 2236, 2445, 2491
Eco53kI GAGCTC 2 cut(s) 841, 1148
Eco57I CTGAAG 4 cut(s) 872, 1028, 1662, 2064
Eco88I CYCGRG 3 cut(s) 776, 1482, 1982
Eco91I GGTNACC 3 cut(s) 220, 646, 752
EcoICRI GAGCTC 2 cut(s) 841, 1148
EcoNI CCTNNNNNAGG 2 cut(s) 332, 947
EcoO109I RGGNCCY 3 cut(s) 2236, 2445, 2491
EcoO65I GGTNACC 3 cut(s) 220, 646, 752
EcoRI GAATTC 1 cut(s) 1082
EcoRII CCWGG 3 cut(s) 1596, 2086, 2343
EcoRV GATATC 1 cut(s) 1243
EcoT14I CCWWGG 5 cut(s) 844, 1461, 1710, 2307, 2395
EcoT22I ATGCAT 1 cut(s) 2299
EcoT38I GRGCYC 3 cut(s) 843, 1150, 2315
ErhI CCWWGG 5 cut(s) 844, 1461, 1710, 2307, 2395
FalI AAGNNNNNCTT 2 cut(s) 2112, 2144
FaqI GGGAC 2 cut(s) 1619, 2431
FauI CCCGC 1 cut(s) 1181
FblI GTMKAC 1 cut(s) 2472
Fnu4HI GCNGC 8 cut(s) 477, 570, 791, 822, 930, 2253, 2405, 2605
FokI GGATG 7 cut(s) 413, 1586, 1613, 1643, 1783, 2570, 2576
FriOI GRGCYC 3 cut(s) 843, 1150, 2315
Fsp4HI GCNGC 8 cut(s) 477, 570, 791, 822, 930, 2253, 2405, 2605
FspBI CTAG 5 cut(s) 96, 119, 482, 711, 2608
GluI GCNGC 8 cut(s) 477, 570, 791, 822, 930, 2253, 2405, 2605
GsaI CCCAGC 1 cut(s) 738
GsuI CTGGAG 4 cut(s) 488, 855, 2211, 2252
HaeIII GGCC 9 cut(s) 368, 1351, 1427, 1791, 2091, 2313, 2343, 2349, 2600
HapII CCGG 2 cut(s) 724, 1423
HgaI GACGC 1 cut(s) 131
Hin1I GRCGYC 1 cut(s) 1695
HincII GTYRAC 4 cut(s) 451, 1216, 1890, 1918
HindII GTYRAC 4 cut(s) 451, 1216, 1890, 1918
HindIII AAGCTT 3 cut(s) 152, 227, 2543
HinfI GANTC 9 cut(s) 169, 457, 728, 868, 1022, 1217, 1228, 1469, 2160
HpaI GTTAAC 1 cut(s) 1918
HpaII CCGG 2 cut(s) 724, 1423
HphI GGTGA 5 cut(s) 188, 232, 764, 871, 988
Hpy166II GTNNAC 8 cut(s) 451, 743, 1216, 1562, 1890, 1918, 2040, 2473
Hpy8I GTNNAC 8 cut(s) 451, 743, 1216, 1562, 1890, 1918, 2040, 2473
Hpy99I CGWCG 2 cut(s) 32, 41
HpyCH4IV ACGT 2 cut(s) 1695, 1920
HpyF10VI GCNNNNNNNGC 6 cut(s) 476, 827, 989, 2018, 2027, 2378
HpySE526I ACGT 2 cut(s) 1695, 1920
Hsp92I GRCGYC 1 cut(s) 1695
KspAI GTTAAC 1 cut(s) 1918
LmnI GCTCC 3 cut(s) 329, 846, 1783
Lsp1109I GCAGC 6 cut(s) 488, 581, 808, 916, 2239, 2416
LweI GCATC 8 cut(s) 122, 1411, 1798, 1805, 1812, 2008, 2017, 2569
MaeI CTAG 5 cut(s) 96, 119, 482, 711, 2608
MaeII ACGT 2 cut(s) 1695, 1920
MaeIII GTNAC 6 cut(s) 220, 316, 646, 752, 850, 2566
MbiI CCGCTC 1 cut(s) 427
MfeI CAATTG 2 cut(s) 1209, 1221
MflI RGATCY 5 cut(s) 492, 1112, 1363, 2051, 2555
MhlI GDGCHC 7 cut(s) 668, 843, 1150, 1442, 1780, 2315, 2420
MlsI TGGCCA 2 cut(s) 2091, 2600
MluNI TGGCCA 2 cut(s) 2091, 2600
MlyI GAGTC 3 cut(s) 737, 862, 1211
MmeI TCCRAC 3 cut(s) 371, 2116, 2207
Mox20I TGGCCA 2 cut(s) 2091, 2600
Mph1103I ATGCAT 1 cut(s) 2299
MroXI GAANNNNTTC 2 cut(s) 1862, 2143
MscI TGGCCA 2 cut(s) 2091, 2600
MseI TTAA 9 cut(s) 105, 525, 899, 920, 1499, 1644, 1719, 1917, 2169
MslI CAYNNNNRTG 2 cut(s) 380, 1278
Msp20I TGGCCA 2 cut(s) 2091, 2600
MspA1I CMGCKG 3 cut(s) 734, 2230, 2604
MspI CCGG 2 cut(s) 724, 1423
MspR9I CCNGG 5 cut(s) 725, 1424, 1598, 2088, 2345
MunI CAATTG 2 cut(s) 1209, 1221
Mva1269I GAATGC 2 cut(s) 1417, 2406
MvaI CCWGG 3 cut(s) 1598, 2088, 2345
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 6 cut(s) 476, 827, 989, 2018, 2027, 2378
NciI CCSGG 2 cut(s) 725, 1424
NcoI CCATGG 3 cut(s) 844, 1461, 2307
NlaIV GGNNCC 8 cut(s) 406, 494, 1365, 1459, 1508, 2053, 2313, 2447
NmuCI GTSAC 5 cut(s) 220, 316, 752, 850, 2566
NruI TCGCGA 1 cut(s) 36
NsiI ATGCAT 1 cut(s) 2299
NspI RCATGY 1 cut(s) 1949
PaeR7I CTCGAG 1 cut(s) 776
PagI TCATGA 1 cut(s) 1152
PaqCI CACCTGC 1 cut(s) 740
PciI ACATGT 1 cut(s) 1945
PcsI WCGNNNNNNNCGW 2 cut(s) 33, 36
PctI GAATGC 2 cut(s) 1417, 2406
PdmI GAANNNNTTC 2 cut(s) 1862, 2143
PfeI GAWTC 6 cut(s) 169, 457, 1022, 1228, 1469, 2160
PflMI CCANNNNNTGG 2 cut(s) 1336, 2189
PfoI TCCNGGA 1 cut(s) 723
PkrI GCNGC 8 cut(s) 478, 571, 792, 823, 931, 2254, 2406, 2606
Ple19I CGATCG 1 cut(s) 34
PleI GAGTC 3 cut(s) 736, 862, 1211
PpsI GAGTC 3 cut(s) 736, 862, 1211
PpuMI RGGWCCY 3 cut(s) 2236, 2445, 2491
PscI ACATGT 1 cut(s) 1945
PsiI TTATAA 1 cut(s) 1392
Psp124BI GAGCTC 2 cut(s) 843, 1150
Psp1406I AACGTT 1 cut(s) 1920
Psp5II RGGWCCY 3 cut(s) 2236, 2445, 2491
Psp6I CCWGG 3 cut(s) 1596, 2086, 2343
PspEI GGTNACC 3 cut(s) 220, 646, 752
PspFI CCCAGC 1 cut(s) 734
PspGI CCWGG 3 cut(s) 1596, 2086, 2343
PspN4I GGNNCC 8 cut(s) 406, 494, 1365, 1459, 1508, 2053, 2313, 2447
PspOMI GGGCCC 1 cut(s) 2311
PspPPI RGGWCCY 3 cut(s) 2236, 2445, 2491
PsrI GAACNNNNNNTAC 2 cut(s) 397, 429
PstNI CAGNNNCTG 2 cut(s) 1880, 2378
PsuI RGATCY 5 cut(s) 492, 1112, 1363, 2051, 2555
PvuI CGATCG 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 2230
RruI TCGCGA 1 cut(s) 36
RsaI GTAC 9 cut(s) 50, 579, 742, 1199, 1385, 1561, 1707, 1961, 2280
RsaNI GTAC 9 cut(s) 49, 578, 741, 1198, 1384, 1560, 1706, 1960, 2279
RseI CAYNNNNRTG 2 cut(s) 380, 1278
Rsr2I CGGWCCG 1 cut(s) 934
RsrII CGGWCCG 1 cut(s) 934
SacI GAGCTC 2 cut(s) 843, 1150
SaqAI TTAA 9 cut(s) 105, 525, 899, 920, 1499, 1644, 1719, 1917, 2169
SatI GCNGC 8 cut(s) 477, 570, 791, 822, 930, 2253, 2405, 2605
ScaI AGTACT 2 cut(s) 50, 2280
SchI GAGTC 3 cut(s) 737, 862, 1211
ScrFI CCNGG 5 cut(s) 725, 1424, 1598, 2088, 2345
SduI GDGCHC 7 cut(s) 668, 843, 1150, 1442, 1780, 2315, 2420
SfaNI GCATC 8 cut(s) 122, 1411, 1798, 1805, 1812, 2008, 2017, 2569
SfcI CTRYAG 1 cut(s) 201
Sfr274I CTCGAG 1 cut(s) 776
SinI GGWCC 4 cut(s) 934, 2236, 2445, 2491
SlaI CTCGAG 1 cut(s) 776
SmiMI CAYNNNNRTG 2 cut(s) 380, 1278
SmlI CTYRAG 5 cut(s) 776, 1406, 1649, 2240, 2440
SmoI CTYRAG 5 cut(s) 776, 1406, 1649, 2240, 2440
SpeI ACTAGT 1 cut(s) 710
SsiI CCGC 9 cut(s) 427, 703, 732, 790, 932, 937, 1188, 2500, 2604
SspMI CTAG 5 cut(s) 96, 119, 482, 711, 2608
SstI GAGCTC 2 cut(s) 843, 1150
StyD4I CCNGG 5 cut(s) 723, 1422, 1596, 2086, 2343
StyI CCWWGG 5 cut(s) 844, 1461, 1710, 2307, 2395
TaiI ACGT 2 cut(s) 1698, 1923
TaqI TCGA 4 cut(s) 239, 777, 1396, 1806
TatI WGTACW 7 cut(s) 48, 577, 740, 1197, 1559, 1959, 2278
TauI GCSGC 2 cut(s) 793, 2607
TfiI GAWTC 6 cut(s) 169, 457, 1022, 1228, 1469, 2160
Tru1I TTAA 9 cut(s) 105, 525, 899, 920, 1499, 1644, 1719, 1917, 2169
Tru9I TTAA 9 cut(s) 105, 525, 899, 920, 1499, 1644, 1719, 1917, 2169
TscAI CASTG 8 cut(s) 468, 597, 673, 921, 1423, 1435, 1525, 2194
TseFI GTSAC 5 cut(s) 220, 316, 752, 850, 2566
TseI GCWGC 6 cut(s) 476, 569, 821, 929, 2252, 2404
Tsp45I GTSAC 5 cut(s) 220, 316, 752, 850, 2566
TspGWI ACGGA 3 cut(s) 413, 662, 2435
TspRI CASTG 8 cut(s) 468, 597, 673, 921, 1423, 1435, 1525, 2194
Van91I CCANNNNNTGG 2 cut(s) 1336, 2189
VpaK11BI GGWCC 4 cut(s) 934, 2236, 2445, 2491
XagI CCTNNNNNAGG 2 cut(s) 332, 947
XapI RAATTY 4 cut(s) 1082, 1301, 1451, 2141
XceI RCATGY 1 cut(s) 1949
XhoI CTCGAG 1 cut(s) 776
XmiI GTMKAC 1 cut(s) 2472
XmnI GAANNNNTTC 2 cut(s) 1862, 2143
XspI CTAG 5 cut(s) 96, 119, 482, 711, 2608
ZraI GACGTC 1 cut(s) 1696
ZrmI AGTACT 2 cut(s) 50, 2280
Zsp2I ATGCAT 1 cut(s) 2299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.