Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006380.1

Orthogroup ID

OG0011252

Physical Location & Seq

Genomic Coordinates Reverse (-)

77901 .. 84385

Gene Structure 6485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2523 bp

atggcggaggctgcaaagagagacctccaaacacccaagagatcctccaagtcccgatccgatcccaaatcctcatcgccttctctccctcctcctcctactccgctctccgccactcctcgccgatccacgcgccgcacctccctacacttcgatgccctccctcctcctccgactacactagccgaagatccggcaaagaaaccaaagaagaagaggaaaacccccaaatctggagccgacaattcgacgattgaccatgtcaacacccccaaatctgctgccgaaggcaagaaatcgaagcaagaggaggaggaaaagttgaccacagttgaagccgagttctcgccggtgtcgccggagcgatccgagaagaagaaaaggaagagaggccatgagaggaaggtggttacaacgcgcggtggtgtggctagcaagaagaggcaggtgttttacaagaaggttgtgtatgacgggggtgagtttgaggttggtgatgatgtgtatgtgaaaaggagagaggatgcgagctccgacgaggaagtggttcaggtggagcaatgtagggtttgcttcaagtctgggaaggctgtgatgattgagtgcgatgattgtttgggtgggttccatttgaaatgcttgaagcctcccttgaaggaggttcctgaaggagattgggtgtgcggtttttgtgaggctcgcaaattggggaaacaggtccagcttcctactccccctcaagggaagaaattacgtaggacatttcgagagaagcttctctcaagcgatttgtgggctgcccgcattgaaagtatatggaaagaagttgacggtagctattggtgtcgtgtgcgttggtatgttatcccggaagagactgctgccggaagacaagctcataatctgaggagggagatttatcgcacaaatgattttgccaacattgagatggaatctattcttcaacattgttttgtgatgaaccctaaagaatatgccaaagccaatgaaggggatgatgtcttcttatgcgaatatgaatatgatattcactggtacagtttcaagcgtcttgcagaacttgacgatgatgaaaaggatgatgatgatgatgctgagagtgatgaagattggaaatgtggcaaagactcagaatctgatacagaagaagatgttgagtttgaagaagagagcacaaagaatatactggctaaaccatctcaagctcatgagttggctgcaaattcacataaagggcggttctttggacttcaaaagattggaatgaagaaaatccccgagcatgttagatgccataagcagactgctcttgaaagagcaaaatcaacacttctgttggcatcattgcctaagtctttaccttgcagggataaagaaatgttggagataagtgcattcatcaagggtgccatctctgatgataaatgtcttggacgttgcctctatattcacggtgttcctggaactggaaagactatgagtgtactggcagtaatgaggaatttgaggtctgaagttgatgctggaagtttaagaccttactgttttgtggagataaatggtctaaagttggcagcacctgagaatatctacagggttatatatgaagcgttaagtgggcatcgagttggttggaaaaaggctctccacttgctaaatgagcgattttctgatggaaagaaattcggcaaagaggatgacaaaccttgtattcttcttattgatgaacttgatcttcttgtgaccagaaaccaatcggttctctataacattcttgactggcctactaagccacactcaaaattagttgtaataggcatagcaaataccatggatcttccggaaaagttgcttccgcgtatttcaagtcgaatgggaatccaaaggctttgctttggcccctataattaccagcagcttcaagagatcatttcgagtcggcttagaggaattgatgcatttgaaaaacaagctatagagttcgcttcaagaaaggtagcagctatttcaggagatgctcgtcgtgcattggaaatatgcaggcgtgcagctgaaataaaagattaccgcataaagaagctaatttcaactcccaacaaagcttctaaagaaaaagcacttgttggtatggcagaggttgaagcagccatacaagaaatgttccaggcacctcatatccaggtgatgaaaacttgttccaaactgggtaaaatctatttgactgctatggtgtacgaactctataaaacaggaatgggtgaaactactttcgaaaagttggcaatgactgtttataatctgtgtacaagcaatggagaagcatttcctggacatgatacgctgttaaaagtcggttgtaagcttggtgaatgcagaattattctatgtgaatcaggagcaaagcacagattgcagaagttacagctcaactttccaagtgacgatgtagcatttgcactaaaggaaagcaaggaactgccttggttggccaagtatctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA BAH PHD

Protein Analysis

840

Amino Acids

95.01

Weight (kDa)

8.73

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	188 - 231	3.2e-08	PHD-finger
BAH	PF01426	267 - 356	2.5e-11	BAH domain
AAA_16	PF13191	460 - 604	2.5e-07	AAA ATPase domain
AAA_22	PF13401	486 - 612	6e-08	AAA domain
AAA	PF00004	489 - 634	6.5e-17	ATPase family associated with various cellular activities (AAA)
Cdc6-ORC-like_ATPase_lid	PF22606	642 - 694	3.4e-08	Cdc6/ORC-like, ATPase lid domain
AAA_lid_10	PF17872	662 - 699	3.3e-10	AAA lid domain
WHD_Cdc6	PF09079	735 - 826	5.5e-08	CDC6, C terminal winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12620 AT4G14700
fragaria_vesca	FvH4_7g17041
malus_domestica	MD03G1176600.v1.1 MD11G1197200.v1.1
prunus_persica	Prupe.4G246200_v2.0.a1 Prupe.5G048200_v2.0.a1 Prupe.5G048200_v2.0.a1
pyrus_communis	pycom03g13390
rosa_chinensis	RchiOBHm_Chr3g0490671
rosa_laevigata	RLG00000022877
rosa_multiflora	Rmu_sc0006380.1_g000017 Rmu_sc0012075.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393320
rosa_rugosa	Rorug03G0245400
rosa_samantha	Rh3AG294600 Rh3BG330800 Rh3CG328300 Rh3DG327700
rosa_wichuraiana	Rw3G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2316
AarI	CACCTGC	1 cut(s)	436
Acc36I	ACCTGC	1 cut(s)	436
AccB1I	GGYRCC	2 cut(s)	1427, 2188
AccBSI	CCGCTC	1 cut(s)	106
AccII	CGCG	4 cut(s)	133, 418, 420, 1879
AccIII	TCCGGA	1 cut(s)	1861
AclWI	GGATC	7 cut(s)	36, 51, 56, 120, 185, 360, 1863
AcoI	YGGCCR	1 cut(s)	2508
AcsI	RAATTY	3 cut(s)	1243, 1522, 1703
AcuI	CTGAAG	2 cut(s)	687, 1554
AfaI	GTAC	4 cut(s)	1058, 1506, 2255, 2326
AfiI	CCNNNNNNNGG	5 cut(s)	233, 740, 741, 1011, 1487
AjnI	CCWGG	4 cut(s)	1480, 2184, 2199, 2347
Alw21I	GWGCWC	2 cut(s)	533, 1196
Alw26I	GTCTC	2 cut(s)	15, 869
AlwI	GGATC	7 cut(s)	36, 51, 56, 120, 185, 360, 1863
AlwNI	CAGNNNCTG	2 cut(s)	1157, 1601
Ama87I	CYCGRG	1 cut(s)	1298
Aor13HI	TCCGGA	1 cut(s)	1861
AoxI	GGCC	4 cut(s)	391, 1802, 1918, 2508
ApoI	RAATTY	3 cut(s)	1243, 1522, 1703
Asp700I	GAANNNNTTC	3 cut(s)	546, 957, 2343
AspLEI	GCGC	2 cut(s)	135, 420
AspS9I	GGNCC	2 cut(s)	718, 1919
AsuC2I	CCSGG	1 cut(s)	869
AsuHPI	GGTGA	5 cut(s)	491, 506, 2215, 2291, 2399
AsuII	TTCGAA	1 cut(s)	2292
AsuNHI	GCTAGC	1 cut(s)	431
AvaI	CYCGRG	1 cut(s)	1298
AvaII	GGWCC	1 cut(s)	718
BalI	TGGCCA	1 cut(s)	2510
BanI	GGYRCC	2 cut(s)	1427, 2188
BanII	GRGCYC	1 cut(s)	533
BarI	GAAGNNNNNNTAC	2 cut(s)	2154, 2186
BbsI	GAAGAC	2 cut(s)	895, 1015
Bbv12I	GWGCWC	2 cut(s)	533, 1196
BbvI	GCAGC	9 cut(s)	268, 784, 868, 1225, 1607, 1948, 2033, 2081, 2177
BccI	CCATC	4 cut(s)	943, 1225, 1439, 1688
BciT130I	CCWGG	4 cut(s)	1482, 2186, 2201, 2349
BcnI	CCSGG	1 cut(s)	869
BcoDI	GTCTC	2 cut(s)	15, 869
BfaI	CTAG	2 cut(s)	182, 432
BfmI	CTRYAG	2 cut(s)	1612, 1995
BfuAI	ACCTGC	1 cut(s)	436
Bme1390I	CCNGG	5 cut(s)	869, 1482, 2186, 2201, 2349
Bme18I	GGWCC	1 cut(s)	718
BmeT110I	CYCGRG	1 cut(s)	1298
BmgT120I	GGNCC	2 cut(s)	718, 1919
BmiI	GGNNCC	6 cut(s)	238, 626, 663, 1429, 1921, 2190
BmrFI	CCNGG	5 cut(s)	869, 1482, 2186, 2201, 2349
BmrI	ACTGGG	1 cut(s)	2234
BmsI	GCATC	9 cut(s)	145, 514, 1102, 1301, 1370, 1531, 1651, 1966, 2026
BmtI	GCTAGC	1 cut(s)	435
BmuI	ACTGGG	1 cut(s)	2234
BpiI	GAAGAC	2 cut(s)	895, 1015
BpmI	CTGGAG	1 cut(s)	255
Bpu14I	TTCGAA	1 cut(s)	2292
BpuEI	CTTGAG	3 cut(s)	723, 766, 1206
BpuMI	CCSGG	1 cut(s)	869
BsaAI	YACGTR	1 cut(s)	755
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	1851, 2501
BsaWI	WCCGGW	1 cut(s)	1861
BsaXI	ACNNNNNCTCC	4 cut(s)	305, 335, 663, 693
Bsc4I	CCNNNNNNNGG	5 cut(s)	233, 740, 741, 1011, 1487
Bse118I	RCCGGY	1 cut(s)	349
Bse1I	ACTGG	6 cut(s)	1058, 1212, 1492, 1512, 1805, 2229
Bse3DI	GCAATG	4 cut(s)	566, 1364, 2310, 2338
BseAI	TCCGGA	1 cut(s)	1861
BseBI	CCWGG	4 cut(s)	1482, 2186, 2201, 2349
BseDI	CCNNGG	2 cut(s)	1851, 2501
BseGI	GGATG	4 cut(s)	529, 1021, 1105, 1723
BseLI	CCNNNNNNNGG	5 cut(s)	233, 740, 741, 1011, 1487
BseMI	GCAATG	4 cut(s)	566, 1364, 2310, 2338
BseMII	CTCAG	4 cut(s)	896, 1107, 1164, 1593
BseNI	ACTGG	6 cut(s)	1058, 1212, 1492, 1512, 1805, 2229
BseRI	GAGGAG	8 cut(s)	81, 84, 108, 156, 159, 323, 326, 922
BseXI	GCAGC	9 cut(s)	268, 784, 868, 1225, 1607, 1948, 2033, 2081, 2177
BsgI	GTGCAG	1 cut(s)	2088
Bsh1236I	CGCG	4 cut(s)	133, 418, 420, 1879
BshFI	GGCC	4 cut(s)	393, 1804, 1920, 2510
BshNI	GGYRCC	2 cut(s)	1427, 2188
BsiHKAI	GWGCWC	2 cut(s)	533, 1196
BsiHKCI	CYCGRG	1 cut(s)	1298
BsiSI	CCGG	6 cut(s)	194, 350, 359, 869, 885, 1862
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	5 cut(s)	233, 740, 741, 1011, 1487
BsmAI	GTCTC	2 cut(s)	15, 869
BsmFI	GGGAC	1 cut(s)	37
BsmI	GAATGC	2 cut(s)	1415, 2396
BsnI	GGCC	4 cut(s)	393, 1804, 1920, 2510
Bso31I	GGTCTC	1 cut(s)	15
BsoBI	CYCGRG	1 cut(s)	1298
Bsp119I	TTCGAA	1 cut(s)	2292
Bsp1286I	GDGCHC	2 cut(s)	533, 1196
Bsp13I	TCCGGA	1 cut(s)	1861
Bsp1407I	TGTACA	1 cut(s)	2324
Bsp143I	GATC	9 cut(s)	41, 56, 61, 125, 190, 365, 1753, 1855, 1947
Bsp19I	CCATGG	1 cut(s)	1851
BspANI	GGCC	4 cut(s)	393, 1804, 1920, 2510
BspCNI	CTCAG	4 cut(s)	897, 1108, 1163, 1594
BspEI	TCCGGA	1 cut(s)	1861
BspFNI	CGCG	4 cut(s)	133, 418, 420, 1879
BspHI	TCATGA	1 cut(s)	1228
BspLI	GGNNCC	6 cut(s)	238, 626, 663, 1429, 1921, 2190
BspMI	ACCTGC	1 cut(s)	436
BspOI	GCTAGC	1 cut(s)	435
BspPI	GGATC	7 cut(s)	36, 51, 56, 120, 185, 360, 1863
BspT104I	TTCGAA	1 cut(s)	2292
BspT107I	GGYRCC	2 cut(s)	1427, 2188
BspTNI	GGTCTC	1 cut(s)	15
BsrBI	CCGCTC	1 cut(s)	106
BsrDI	GCAATG	4 cut(s)	566, 1364, 2310, 2338
BsrFI	RCCGGY	1 cut(s)	349
BsrGI	TGTACA	1 cut(s)	2324
BsrI	ACTGG	6 cut(s)	1058, 1212, 1492, 1512, 1805, 2229
BssAI	RCCGGY	1 cut(s)	349
BssECI	CCNNGG	2 cut(s)	1851, 2501
BssMI	GATC	9 cut(s)	41, 56, 61, 125, 190, 365, 1753, 1855, 1947
BssT1I	CCWWGG	2 cut(s)	1851, 2501
Bst2UI	CCWGG	4 cut(s)	1482, 2186, 2201, 2349
Bst4CI	ACNGT	6 cut(s)	331, 833, 1061, 1475, 1565, 2311
Bst6I	CTCTTC	5 cut(s)	209, 380, 434, 867, 1182
BstAPI	GCANNNNNTGC	1 cut(s)	2431
BstAUI	TGTACA	1 cut(s)	2324
BstBAI	YACGTR	1 cut(s)	755
BstBI	TTCGAA	1 cut(s)	2292
BstC8I	GCNNGC	6 cut(s)	433, 529, 700, 802, 2063, 2067
BstDEI	CTNAG	7 cut(s)	905, 1116, 1150, 1371, 1602, 1809, 1964
BstDSI	CCRYGG	1 cut(s)	1851
BstF5I	GGATG	4 cut(s)	529, 1021, 1105, 1723
BstFNI	CGCG	4 cut(s)	133, 418, 420, 1879
BstHHI	GCGC	2 cut(s)	135, 420
BstKTI	GATC	9 cut(s)	44, 59, 64, 128, 193, 368, 1756, 1858, 1950
BstMAI	GTCTC	2 cut(s)	15, 869
BstMBI	GATC	9 cut(s)	41, 56, 61, 125, 190, 365, 1753, 1855, 1947
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 355, 1681, 1810, 2045, 2431
BstNI	CCWGG	4 cut(s)	1482, 2186, 2201, 2349
BstNSI	RCATGY	1 cut(s)	1307
BstSCI	CCNGG	5 cut(s)	867, 1480, 2184, 2199, 2347
BstSFI	CTRYAG	2 cut(s)	1612, 1995
BstSNI	TACGTA	1 cut(s)	755
BstUI	CGCG	4 cut(s)	133, 418, 420, 1879
BstV1I	GCAGC	9 cut(s)	268, 784, 868, 1225, 1607, 1948, 2033, 2081, 2177
BstV2I	GAAGAC	2 cut(s)	895, 1015
BstX2I	RGATCY	3 cut(s)	41, 190, 1855
BstYI	RGATCY	3 cut(s)	41, 190, 1855
BsuRI	GGCC	4 cut(s)	393, 1804, 1920, 2510
BtgI	CCRYGG	1 cut(s)	1851
BtgZI	GCGATG	2 cut(s)	60, 621
BtsCI	GGATG	4 cut(s)	529, 1021, 1105, 1723
BtsIMutI	CAGTG	1 cut(s)	1051
BveI	ACCTGC	1 cut(s)	436
Cac8I	GCNNGC	6 cut(s)	433, 529, 700, 802, 2063, 2067
CaiI	CAGNNNCTG	2 cut(s)	1157, 1601
CciI	TCATGA	1 cut(s)	1228
CfoI	GCGC	2 cut(s)	135, 420
Cfr10I	RCCGGY	1 cut(s)	349
Cfr13I	GGNCC	2 cut(s)	718, 1919
CseI	GACGC	1 cut(s)	1058
Csp6I	GTAC	4 cut(s)	1057, 1505, 2254, 2325
CviAII	CATG	6 cut(s)	260, 395, 1229, 1304, 1852, 2354
CviQI	GTAC	4 cut(s)	1057, 1505, 2254, 2325
DdeI	CTNAG	7 cut(s)	905, 1116, 1150, 1371, 1602, 1809, 1964
DpnI	GATC	9 cut(s)	43, 58, 63, 127, 192, 367, 1755, 1857, 1949
DpnII	GATC	9 cut(s)	41, 56, 61, 125, 190, 365, 1753, 1855, 1947
EaeI	YGGCCR	1 cut(s)	2508
Eam1104I	CTCTTC	5 cut(s)	209, 380, 434, 867, 1182
EarI	CTCTTC	5 cut(s)	209, 380, 434, 867, 1182
EciI	GGCGGA	2 cut(s)	20, 100
Ecl136II	GAGCTC	1 cut(s)	531
Eco105I	TACGTA	1 cut(s)	755
Eco130I	CCWWGG	2 cut(s)	1851, 2501
Eco24I	GRGCYC	1 cut(s)	533
Eco31I	GGTCTC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	718
Eco53kI	GAGCTC	1 cut(s)	531
Eco57I	CTGAAG	2 cut(s)	687, 1554
Eco88I	CYCGRG	1 cut(s)	1298
EcoICRI	GAGCTC	1 cut(s)	531
EcoRII	CCWGG	4 cut(s)	1480, 2184, 2199, 2347
EcoT14I	CCWWGG	2 cut(s)	1851, 2501
EcoT22I	ATGCAT	1 cut(s)	1981
EcoT38I	GRGCYC	1 cut(s)	533
ErhI	CCWWGG	2 cut(s)	1851, 2501
FaeI	CATG	6 cut(s)	263, 398, 1232, 1307, 1855, 2357
FalI	AAGNNNNNCTT	2 cut(s)	635, 667
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	6 cut(s)	259, 394, 1228, 1303, 1851, 2353
FauI	CCCGC	1 cut(s)	809
FokI	GGATG	4 cut(s)	536, 1028, 1112, 1730
FriOI	GRGCYC	1 cut(s)	533
FspBI	CTAG	2 cut(s)	182, 432
GlaI	GCGC	2 cut(s)	134, 419
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	4 cut(s)	393, 1804, 1920, 2510
HapII	CCGG	6 cut(s)	194, 350, 359, 869, 885, 1862
HgaI	GACGC	1 cut(s)	1058
HhaI	GCGC	2 cut(s)	135, 420
Hin1II	CATG	6 cut(s)	263, 398, 1232, 1307, 1855, 2357
Hin6I	GCGC	2 cut(s)	133, 418
HinP1I	GCGC	2 cut(s)	133, 418
HincII	GTYRAC	3 cut(s)	265, 324, 829
HindII	GTYRAC	3 cut(s)	265, 324, 829
HindIII	AAGCTT	3 cut(s)	773, 2121, 2381
HinfI	GANTC	6 cut(s)	953, 1148, 1154, 1899, 1957, 2411
HpaII	CCGG	6 cut(s)	194, 350, 359, 869, 885, 1862
HphI	GGTGA	5 cut(s)	491, 506, 2215, 2291, 2399
Hpy166II	GTNNAC	6 cut(s)	265, 324, 829, 1505, 2254, 2325
Hpy8I	GTNNAC	6 cut(s)	265, 324, 829, 1505, 2254, 2325
Hpy99I	CGWCG	3 cut(s)	253, 539, 2046
HpyAV	CCTTC	8 cut(s)	90, 281, 397, 454, 580, 649, 662, 1004
HpyCH4III	ACNGT	6 cut(s)	331, 833, 1061, 1475, 1565, 2311
HpyCH4IV	ACGT	2 cut(s)	754, 1456
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 355, 1681, 1810, 2045, 2431
HpyF3I	CTNAG	7 cut(s)	905, 1116, 1150, 1371, 1602, 1809, 1964
HpySE526I	ACGT	2 cut(s)	754, 1456
Hsp92II	CATG	6 cut(s)	263, 398, 1232, 1307, 1855, 2357
HspAI	GCGC	2 cut(s)	133, 418
Kpn2I	TCCGGA	1 cut(s)	1861
Kzo9I	GATC	9 cut(s)	41, 56, 61, 125, 190, 365, 1753, 1855, 1947
LmnI	GCTCC	5 cut(s)	236, 361, 536, 556, 2417
Lsp1109I	GCAGC	9 cut(s)	268, 784, 868, 1225, 1607, 1948, 2033, 2081, 2177
LweI	GCATC	9 cut(s)	145, 514, 1102, 1301, 1370, 1531, 1651, 1966, 2026
MaeI	CTAG	2 cut(s)	182, 432
MaeII	ACGT	2 cut(s)	754, 1456
MaeIII	GTNAC	4 cut(s)	409, 1762, 2439, 2459
MalI	GATC	9 cut(s)	43, 58, 63, 127, 192, 367, 1755, 1857, 1949
MbiI	CCGCTC	1 cut(s)	106
MboI	GATC	9 cut(s)	41, 56, 61, 125, 190, 365, 1753, 1855, 1947
MflI	RGATCY	3 cut(s)	41, 190, 1855
MhlI	GDGCHC	2 cut(s)	533, 1196
MlsI	TGGCCA	1 cut(s)	2510
MluNI	TGGCCA	1 cut(s)	2510
MlyI	GAGTC	2 cut(s)	1142, 1966
MmeI	TCCRAC	4 cut(s)	197, 558, 1383, 1634
Mox20I	TGGCCA	1 cut(s)	2510
Mph1103I	ATGCAT	1 cut(s)	1981
MroI	TCCGGA	1 cut(s)	1861
MroXI	GAANNNNTTC	3 cut(s)	546, 957, 2343
MscI	TGGCCA	1 cut(s)	2510
MseI	TTAA	3 cut(s)	1553, 1634, 2366
MslI	CAYNNNNRTG	2 cut(s)	153, 947
Msp20I	TGGCCA	1 cut(s)	2510
MspA1I	CMGCKG	1 cut(s)	2072
MspI	CCGG	6 cut(s)	194, 350, 359, 869, 885, 1862
MspR9I	CCNGG	5 cut(s)	869, 1482, 2186, 2201, 2349
Mva1269I	GAATGC	2 cut(s)	1415, 2396
MvaI	CCWGG	4 cut(s)	1482, 2186, 2201, 2349
MvnI	CGCG	4 cut(s)	133, 418, 420, 1879
MwoI	GCNNNNNNNGC	6 cut(s)	11, 355, 1681, 1810, 2045, 2431
NciI	CCSGG	1 cut(s)	869
NcoI	CCATGG	1 cut(s)	1851
NdeII	GATC	9 cut(s)	41, 56, 61, 125, 190, 365, 1753, 1855, 1947
NheI	GCTAGC	1 cut(s)	431
NlaIII	CATG	6 cut(s)	263, 398, 1232, 1307, 1855, 2357
NlaIV	GGNNCC	6 cut(s)	238, 626, 663, 1429, 1921, 2190
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	2 cut(s)	1762, 2459
NsiI	ATGCAT	1 cut(s)	1981
NspI	RCATGY	1 cut(s)	1307
NspV	TTCGAA	1 cut(s)	2292
PagI	TCATGA	1 cut(s)	1228
PaqCI	CACCTGC	1 cut(s)	436
PctI	GAATGC	2 cut(s)	1415, 2396
PdmI	GAANNNNTTC	3 cut(s)	546, 957, 2343
PfeI	GAWTC	4 cut(s)	953, 1154, 1899, 2411
PflFI	GACNNNGTC	1 cut(s)	260
PfoI	TCCNGGA	3 cut(s)	867, 1480, 2347
PleI	GAGTC	2 cut(s)	1142, 1965
PpsI	GAGTC	2 cut(s)	1142, 1965
Ppu21I	YACGTR	1 cut(s)	755
PsiI	TTATAA	1 cut(s)	2316
Psp124BI	GAGCTC	1 cut(s)	533
Psp6I	CCWGG	4 cut(s)	1480, 2184, 2199, 2347
PspGI	CCWGG	4 cut(s)	1480, 2184, 2199, 2347
PspN4I	GGNNCC	6 cut(s)	238, 626, 663, 1429, 1921, 2190
PspPI	GGNCC	2 cut(s)	718, 1919
PstNI	CAGNNNCTG	2 cut(s)	1157, 1601
PsuI	RGATCY	3 cut(s)	41, 190, 1855
PsyI	GACNNNGTC	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	2072
RsaI	GTAC	4 cut(s)	1058, 1506, 2255, 2326
RsaNI	GTAC	4 cut(s)	1057, 1505, 2254, 2325
RseI	CAYNNNNRTG	2 cut(s)	153, 947
SacI	GAGCTC	1 cut(s)	533
SaqAI	TTAA	3 cut(s)	1553, 1634, 2366
Sau3AI	GATC	9 cut(s)	41, 56, 61, 125, 190, 365, 1753, 1855, 1947
Sau96I	GGNCC	2 cut(s)	718, 1919
SchI	GAGTC	2 cut(s)	1142, 1966
ScrFI	CCNGG	5 cut(s)	869, 1482, 2186, 2201, 2349
SduI	GDGCHC	2 cut(s)	533, 1196
SfaNI	GCATC	9 cut(s)	145, 514, 1102, 1301, 1370, 1531, 1651, 1966, 2026
SfcI	CTRYAG	2 cut(s)	1612, 1995
SfuI	TTCGAA	1 cut(s)	2292
SgrAI	CRCCGGYG	1 cut(s)	349
SinI	GGWCC	1 cut(s)	718
SmiMI	CAYNNNNRTG	2 cut(s)	153, 947
SmlI	CTYRAG	3 cut(s)	738, 781, 1221
SmoI	CTYRAG	3 cut(s)	738, 781, 1221
SnaBI	TACGTA	1 cut(s)	755
SspMI	CTAG	2 cut(s)	182, 432
SstI	GAGCTC	1 cut(s)	533
StyD4I	CCNGG	5 cut(s)	867, 1480, 2184, 2199, 2347
StyI	CCWWGG	2 cut(s)	1851, 2501
TaaI	ACNGT	6 cut(s)	331, 833, 1061, 1475, 1565, 2311
TaiI	ACGT	2 cut(s)	757, 1459
TaqI	TCGA	8 cut(s)	153, 248, 299, 766, 1645, 1891, 1955, 2292
TatI	WGTACW	2 cut(s)	1504, 2324
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	4 cut(s)	953, 1154, 1899, 2411
Tru1I	TTAA	3 cut(s)	1553, 1634, 2366
Tru9I	TTAA	3 cut(s)	1553, 1634, 2366
TscAI	CASTG	1 cut(s)	1058
TseFI	GTSAC	2 cut(s)	1762, 2459
Tsp45I	GTSAC	2 cut(s)	1762, 2459
TspRI	CASTG	1 cut(s)	1058
Tth111I	GACNNNGTC	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	718
XapI	RAATTY	3 cut(s)	1243, 1522, 1703
XceI	RCATGY	1 cut(s)	1307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	946
XmnI	GAANNNNTTC	3 cut(s)	546, 957, 2343
XspI	CTAG	2 cut(s)	182, 432
Zsp2I	ATGCAT	1 cut(s)	1981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.