Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006572.1

Orthogroup ID

OG0009005

Physical Location & Seq

Genomic Coordinates Reverse (-)

28476 .. 39720

Gene Structure 11245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2775 bp

atgctgagcagagcaacagccagagcatcaaaccacttgttcttcacgaacaagaataagaattctcagtttctagggctcagcaacaatctcccatatgctgcttcaaaccctgtatctaactttgtgagcatcacgtggaacaacaacaacacctctagaatgtcaaaaatgaagagtttcacaacccgagcaaccgcgcagcctctcaagaatgctgatgagctcatcgactctgtcgagaccttcatcttcgattgcgatggagttatatggaaaggagataagctgatagatggcgtcccagaaactcttgatatgctacggtccaagggcaaaagattagtctttgttaccaacaactcaacaaaatctaggaagcaatatggtaaaaagtttgagacacttggtctgaatgtcagtgaggaagaaatttttgcttcatcttttgctgctgctgcctatttgaagtccataaattttccaaaagataaaaaggtttacgtgattggtgaggatggtatcttgaaggagcttgagcttgctggatttcaatacctcggtggaccagaagacggagagaagaagatagagctgaagcctggatttctgatggagcatgatgagagcgttggagctgttgtggttggatttgatcgatatgtcaactacttcaaaattcagtatgggacactctgtatacgtgaaaaccctggatgtcttttcattgcaacaaatcgtgatgctgtcactcatctcacagatgctcaggaatgggcaggtggtggttccatggttggtgctatccagggatctactcagcgtgaaccactggttgtgggaaagccctccacatttatgatggactacttagcaaatgaatttggcatactgaagtcacaaatttgcatggtcggggacagattggatactgatattctgtttggacaaaatggtggttgcaaaactcttcttgttctctcaggtgtcaccactttaccagtgcttcaaaatcccagcaacaccatacaaccagatttttacaccaacaagatctcagactttttgtctcccaaggctgcaaccagaagctcagaaatggaatcagaggacgagttcgatatgcacgatgccaacgacgacgacaacgacgaggatttctacagcggcggcgacgacgacgccgccgcctctatggacagcgacgatgccggcgttgccgattacgagttcatcgataacgactccgatgattccaatgacgccgcctcgcatcgataccagcaaaactacactgttttgacggaagctgacatttgtcaacatcaagaggaggatattacaaagatatctacagtgctttccatctcaagggctgcagctagcatactgctccgctactataattggagtgtaagcaaagtacatgatgagtggtttgcagatgaagaaaaggttcgcaagactgttggcttaccagagaaaccagttattgaataccgtaatgctaaagaacttaattgtgggatttgttttgacacctatctttgtgaagagatgcatgctgcagcttgtggtcatcctttttgtgactcatgctgggcaggttatattggtacggcaattaatgatggtcctggatgtttaatattgcgctgtcctgatccatcttgtggtgctgttgttttccaagatatgattaatgaactggcttccaatgaagacagggagaaatattctcgctactttattagatcttatgtcgattgctggaactgtactgaagaagctcatcgccccgttgattgtggcacagtggccaaagggatattgaagaacagtgccgaatctgaaaatatgaatttgatattggctaattccaagccctgccccaagtgcaaacgacccattgagaaaaaccaaggctgtatgcatatcacttgcacaccaccttgcaaatttgagttttgctggctctgtcttggtgcatggtcagaacatggtgaaaggacaggtggcttttatgcctgtaaccgctatgagacagcgaagcaggagggagtgtatgatgaggcagagaaacgaagagagatggccaagaactctctagagaggtacacccattattacgaaagatgggctaccaatcagtcgtccagacaaaaagcactagcagacttgcagcagatgcagactgtgcatcttgagaagctgagcgacatccagtgccaacctgagtcacagttgaagttcattacagaggcctggttacagatagttgagtgtaggcgagtactgaaatggacatatgcctatggatattatttacctgagcacgaacatgccaagagacagttctttgaatacttgcaaggtgaggccgagtctgggttggaacgacttcatcaatgtgcagaaaaggagctgcaagtttatctcaatgaagaggacccaccaaaagattttaatgagtttcgcacaaaacttgctggattgaccagcgtgacacgaaactactttgaaaatttagttcgagctctggagaatggtctgtcagatgtggactccattggtgcaagcagcaagacggcaaactcaaagagtttgggaggtgcaagcagcaagggaagaggtgggaggggcaaggctacaacatccaggtcaagtagctccaatagaaatattgatgattcagtccactggtcctgtgaacattgcacctttgcaaatgtgaggtcagccactgtctgccagatgtgccaacaacgccggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

924

Amino Acids

103.71

Weight (kDa)

5.18

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	81 - 320	6.3e-13	haloacid dehalogenase-like hydrolase
Hydrolase_6	PF13344	83 - 185	1.1e-34	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	280 - 354	8.7e-20	HAD-hyrolase-like
UBA_ARI1	PF21235	441 - 480	2.6e-09	E3 ubiquitin-protein ligase ARIH1, UBA-like domain
IBR_1	PF22191	625 - 665	3.7e-14	IBR domain
IBR	PF01485	625 - 666	7.4e-07	IBR domain, a half RING-finger domain
IBR_2	PF22605	626 - 665	7.6e-12	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65430
fragaria_vesca	FvH4_6g00130 FvH4_6g00130
malus_domestica	MD04G1248300.v1.1 MD12G1262400.v1.1
prunus_persica	Prupe.6G364600_v2.0.a1
pyrus_communis	pycom04g21900 pycom12g24160
rosa_chinensis	RchiOBHm_Chr2g0127711 RchiOBHm_Chr3g0447471 RchiOBHm_Chr6g0267381
rosa_laevigata	RLG00000025995
rosa_multiflora	Rmu_sc0006572.1_g000005
rosa_roxburghii	Rroxscaffold_5G00344110 Rroxscaffold_6G00425690
rosa_rugosa	Rorug02G0602100
rosa_samantha	Rh2BG278300 Rh3AG002300 Rh3BG001800 Rh3CG002100 Rh3DG002200
rosa_wichuraiana	Rw3G000120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	770
Acc36I	ACCTGC	2 cut(s)	770, 1595
AccB7I	CCANNNNNTGG	1 cut(s)	1673
AccI	GTMKAC	1 cut(s)	700
AccII	CGCG	1 cut(s)	200
AciI	CCGC	8 cut(s)	198, 1167, 1170, 1185, 1188, 1266, 1396, 2035
AclWI	GGATC	2 cut(s)	820, 1658
AcoI	YGGCCR	2 cut(s)	1818, 2094
AcsI	RAATTY	9 cut(s)	61, 432, 478, 678, 881, 903, 1861, 1958, 2524
AcuI	CTGAAG	3 cut(s)	617, 914, 1803
AcvI	CACGTG	1 cut(s)	138
AcyI	GRCGYC	3 cut(s)	300, 1182, 1263
AfaI	GTAC	5 cut(s)	1425, 1618, 1780, 2117, 2295
AfiI	CCNNNNNNNGG	4 cut(s)	575, 1371, 1673, 2388
AhdI	GACNNNNNGTC	2 cut(s)	408, 1066
AjnI	CCWGG	6 cut(s)	601, 712, 807, 1636, 2264, 2657
AjuI	GAANNNNNNNTTGG	4 cut(s)	1853, 1885, 2339, 2371
Alw21I	GWGCWC	3 cut(s)	228, 2337, 2539
Alw26I	GTCTC	5 cut(s)	236, 395, 1074, 2036, 2344
AlwI	GGATC	2 cut(s)	820, 1658
AlwNI	CAGNNNCTG	1 cut(s)	2744
Ama87I	CYCGRG	1 cut(s)	189
AoxI	GGCC	4 cut(s)	1818, 2094, 2262, 2379
ApoI	RAATTY	9 cut(s)	61, 432, 478, 678, 881, 903, 1861, 1958, 2524
ArsI	GACNNNNNNTTYG	4 cut(s)	330, 362, 2720, 2752
AseI	ATTAAT	2 cut(s)	1626, 1701
Asp700I	GAANNNNTTC	3 cut(s)	179, 1455, 2400
AspLEI	GCGC	2 cut(s)	202, 1656
AspS9I	GGNCC	5 cut(s)	327, 566, 1634, 2449, 2703
AsuHPI	GGTGA	4 cut(s)	524, 982, 2015, 2387
AsuNHI	GCTAGC	1 cut(s)	1382
AvaI	CYCGRG	1 cut(s)	189
AvaII	GGWCC	5 cut(s)	327, 566, 1634, 2449, 2703
BalI	TGGCCA	2 cut(s)	1820, 2096
BanII	GRGCYC	3 cut(s)	81, 228, 2539
BbrPI	CACGTG	1 cut(s)	138
BbsI	GAAGAC	2 cut(s)	579, 1728
Bbv12I	GWGCWC	3 cut(s)	228, 2337, 2539
BceAI	ACGGC	2 cut(s)	1635, 2604
BciT130I	CCWGG	6 cut(s)	603, 714, 809, 1638, 2266, 2659
BciVI	GTATCC	1 cut(s)	922
BcoDI	GTCTC	5 cut(s)	236, 395, 1074, 2036, 2344
BfaI	CTAG	6 cut(s)	74, 159, 375, 1383, 2108, 2171
BfmI	CTRYAG	4 cut(s)	1162, 1353, 1377, 1566
BfuAI	ACCTGC	2 cut(s)	770, 1595
BfuI	GTATCC	1 cut(s)	922
BglII	AGATCT	2 cut(s)	1053, 1754
BlpI	GCTNAGC	3 cut(s)	5, 80, 2213
BmcAI	AGTACT	1 cut(s)	2295
Bme1390I	CCNGG	6 cut(s)	603, 714, 809, 1638, 2266, 2659
Bme18I	GGWCC	5 cut(s)	327, 566, 1634, 2449, 2703
BmeRI	GACNNNNNGTC	2 cut(s)	408, 1066
BmeT110I	CYCGRG	1 cut(s)	189
BmgT120I	GGNCC	5 cut(s)	327, 566, 1634, 2449, 2703
BmiI	GGNNCC	2 cut(s)	790, 2451
BmrFI	CCNGG	6 cut(s)	603, 714, 809, 1638, 2266, 2659
BmtI	GCTAGC	1 cut(s)	1386
BoxI	GACNNNNGTC	1 cut(s)	1317
BpiI	GAAGAC	2 cut(s)	579, 1728
BpmI	CTGGAG	1 cut(s)	2561
Bpu10I	CCTNAGC	2 cut(s)	768, 2331
Bpu1102I	GCTNAGC	3 cut(s)	5, 80, 2213
BpuEI	CTTGAG	4 cut(s)	194, 557, 1354, 2225
Bsa29I	ATCGAT	3 cut(s)	658, 1236, 1276
BsaAI	YACGTR	3 cut(s)	138, 505, 704
BsaHI	GRCGYC	3 cut(s)	300, 1182, 1263
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	7 cut(s)	330, 559, 712, 792, 808, 1074, 1921
BsaXI	ACNNNNNCTCC	4 cut(s)	627, 657, 2048, 2078
Bsc4I	CCNNNNNNNGG	4 cut(s)	575, 1371, 1673, 2388
Bse118I	RCCGGY	2 cut(s)	1211, 2769
Bse1I	ACTGG	6 cut(s)	837, 1001, 1487, 1713, 2224, 2705
Bse3DI	GCAATG	2 cut(s)	726, 2713
BseBI	CCWGG	6 cut(s)	603, 714, 809, 1638, 2266, 2659
BseCI	ATCGAT	3 cut(s)	658, 1236, 1276
BseDI	CCNNGG	7 cut(s)	330, 559, 712, 792, 808, 1074, 1921
BseGI	GGATG	6 cut(s)	523, 722, 1579, 1646, 2220, 2654
BseLI	CCNNNNNNNGG	4 cut(s)	575, 1371, 1673, 2388
BseMI	GCAATG	2 cut(s)	726, 2713
BseNI	ACTGG	6 cut(s)	837, 1001, 1487, 1713, 2224, 2705
BseRI	GAGGAG	1 cut(s)	1346
BseYI	CCCAGC	2 cut(s)	1016, 1599
BsgI	GTGCAG	1 cut(s)	2433
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	4 cut(s)	1820, 2096, 2264, 2381
BshVI	ATCGAT	3 cut(s)	658, 1236, 1276
BsiHKAI	GWGCWC	3 cut(s)	228, 2337, 2539
BsiHKCI	CYCGRG	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	1212, 2770
BslFI	GGGAC	3 cut(s)	287, 703, 932
BslI	CCNNNNNNNGG	4 cut(s)	575, 1371, 1673, 2388
BsmAI	GTCTC	5 cut(s)	236, 395, 1074, 2036, 2344
BsmFI	GGGAC	3 cut(s)	287, 703, 932
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	4 cut(s)	1820, 2096, 2264, 2381
Bso31I	GGTCTC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	189
Bsp1286I	GDGCHC	4 cut(s)	81, 228, 2337, 2539
Bsp143I	GATC	5 cut(s)	655, 812, 1053, 1663, 1754
Bsp1720I	GCTNAGC	3 cut(s)	5, 80, 2213
Bsp19I	CCATGG	1 cut(s)	792
BspACI	CCGC	8 cut(s)	198, 1167, 1170, 1185, 1188, 1266, 1396, 2035
BspANI	GGCC	4 cut(s)	1820, 2096, 2264, 2381
BspDI	ATCGAT	3 cut(s)	658, 1236, 1276
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	2 cut(s)	790, 2451
BspMAI	CTGCAG	2 cut(s)	1381, 1570
BspMI	ACCTGC	2 cut(s)	770, 1595
BspOI	GCTAGC	1 cut(s)	1386
BspPI	GGATC	2 cut(s)	820, 1658
BspTNI	GGTCTC	1 cut(s)	236
BsrDI	GCAATG	2 cut(s)	726, 2713
BsrFI	RCCGGY	2 cut(s)	1211, 2769
BsrI	ACTGG	6 cut(s)	837, 1001, 1487, 1713, 2224, 2705
BssAI	RCCGGY	2 cut(s)	1211, 2769
BssECI	CCNNGG	7 cut(s)	330, 559, 712, 792, 808, 1074, 1921
BssMI	GATC	5 cut(s)	655, 812, 1053, 1663, 1754
BssNAI	GTATAC	1 cut(s)	701
BssNI	GRCGYC	3 cut(s)	300, 1182, 1263
BssT1I	CCWWGG	4 cut(s)	330, 792, 1074, 1921
Bst1107I	GTATAC	1 cut(s)	701
Bst2UI	CCWGG	6 cut(s)	603, 714, 809, 1638, 2266, 2659
Bst6I	CTCTTC	6 cut(s)	170, 975, 1548, 2080, 2439, 2623
BstACI	GRCGYC	3 cut(s)	300, 1182, 1263
BstAPI	GCANNNNNTGC	2 cut(s)	2188, 2197
BstBAI	YACGTR	3 cut(s)	138, 505, 704
BstC8I	GCNNGC	7 cut(s)	543, 1213, 1384, 1563, 1973, 2578, 2617
BstDSI	CCRYGG	1 cut(s)	792
BstF5I	GGATG	6 cut(s)	523, 722, 1579, 1646, 2220, 2654
BstFNI	CGCG	1 cut(s)	200
BstHHI	GCGC	2 cut(s)	202, 1656
BstKTI	GATC	5 cut(s)	658, 815, 1056, 1666, 1757
BstMAI	GTCTC	5 cut(s)	236, 395, 1074, 2036, 2344
BstMBI	GATC	5 cut(s)	655, 812, 1053, 1663, 1754
BstMWI	GCNNNNNNNGC	7 cut(s)	458, 1217, 1896, 2188, 2197, 2757, 2766
BstNI	CCWGG	6 cut(s)	603, 714, 809, 1638, 2266, 2659
BstNSI	RCATGY	2 cut(s)	1565, 2345
BstPAI	GACNNNNGTC	1 cut(s)	1317
BstSCI	CCNGG	6 cut(s)	601, 712, 807, 1636, 2264, 2657
BstSFI	CTRYAG	4 cut(s)	1162, 1353, 1377, 1566
BstUI	CGCG	1 cut(s)	200
BstV2I	GAAGAC	2 cut(s)	579, 1728
BstX2I	RGATCY	3 cut(s)	812, 1053, 1754
BstYI	RGATCY	3 cut(s)	812, 1053, 1754
BstZ17I	GTATAC	1 cut(s)	701
Bsu15I	ATCGAT	3 cut(s)	658, 1236, 1276
BsuI	GTATCC	1 cut(s)	922
BsuRI	GGCC	4 cut(s)	1820, 2096, 2264, 2381
BsuTUI	ATCGAT	3 cut(s)	658, 1236, 1276
BtgI	CCRYGG	1 cut(s)	792
BtgZI	GCGATG	2 cut(s)	276, 1778
BtsCI	GGATG	6 cut(s)	523, 722, 1579, 1646, 2220, 2654
BveI	ACCTGC	2 cut(s)	770, 1595
Cac8I	GCNNGC	7 cut(s)	543, 1213, 1384, 1563, 1973, 2578, 2617
CaiI	CAGNNNCTG	1 cut(s)	2744
CfoI	GCGC	2 cut(s)	202, 1656
Cfr10I	RCCGGY	2 cut(s)	1211, 2769
Cfr13I	GGNCC	5 cut(s)	327, 566, 1634, 2449, 2703
ClaI	ATCGAT	3 cut(s)	658, 1236, 1276
CseI	GACGC	3 cut(s)	289, 1190, 1271
Csp6I	GTAC	5 cut(s)	1424, 1617, 1779, 2116, 2294
CviAII	CATG	9 cut(s)	620, 793, 910, 1427, 1562, 1596, 1989, 2000, 2342
CviQI	GTAC	5 cut(s)	1424, 1617, 1779, 2116, 2294
DpnI	GATC	5 cut(s)	657, 814, 1055, 1665, 1756
DpnII	GATC	5 cut(s)	655, 812, 1053, 1663, 1754
DriI	GACNNNNNGTC	2 cut(s)	408, 1066
EaeI	YGGCCR	2 cut(s)	1818, 2094
Eam1104I	CTCTTC	6 cut(s)	170, 975, 1548, 2080, 2439, 2623
Eam1105I	GACNNNNNGTC	2 cut(s)	408, 1066
EarI	CTCTTC	6 cut(s)	170, 975, 1548, 2080, 2439, 2623
Ecl136II	GAGCTC	2 cut(s)	226, 2537
Eco130I	CCWWGG	4 cut(s)	330, 792, 1074, 1921
Eco147I	AGGCCT	1 cut(s)	2264
Eco24I	GRGCYC	3 cut(s)	81, 228, 2539
Eco31I	GGTCTC	1 cut(s)	236
Eco32I	GATATC	1 cut(s)	1350
Eco47I	GGWCC	5 cut(s)	327, 566, 1634, 2449, 2703
Eco53kI	GAGCTC	2 cut(s)	226, 2537
Eco57I	CTGAAG	3 cut(s)	617, 914, 1803
Eco72I	CACGTG	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	189
EcoICRI	GAGCTC	2 cut(s)	226, 2537
EcoO109I	RGGNCCY	1 cut(s)	2449
EcoRI	GAATTC	1 cut(s)	61
EcoRII	CCWGG	6 cut(s)	601, 712, 807, 1636, 2264, 2657
EcoRV	GATATC	1 cut(s)	1350
EcoT14I	CCWWGG	4 cut(s)	330, 792, 1074, 1921
EcoT22I	ATGCAT	2 cut(s)	1563, 1935
EcoT38I	GRGCYC	3 cut(s)	81, 228, 2539
ErhI	CCWWGG	4 cut(s)	330, 792, 1074, 1921
FaeI	CATG	9 cut(s)	623, 796, 913, 1430, 1565, 1599, 1992, 2003, 2345
FaqI	GGGAC	3 cut(s)	287, 703, 932
FatI	CATG	9 cut(s)	619, 792, 909, 1426, 1561, 1595, 1988, 1999, 2341
FauNDI	CATATG	2 cut(s)	97, 2308
FblI	GTMKAC	1 cut(s)	700
FokI	GGATG	6 cut(s)	530, 729, 1566, 1653, 2207, 2641
FriOI	GRGCYC	3 cut(s)	81, 228, 2539
FspBI	CTAG	6 cut(s)	74, 159, 375, 1383, 2108, 2171
GlaI	GCGC	2 cut(s)	201, 1655
GsaI	CCCAGC	2 cut(s)	1020, 1603
GsuI	CTGGAG	1 cut(s)	2561
HaeIII	GGCC	4 cut(s)	1820, 2096, 2264, 2381
HapII	CCGG	2 cut(s)	1212, 2770
HgaI	GACGC	3 cut(s)	289, 1190, 1271
HhaI	GCGC	2 cut(s)	202, 1656
Hin1I	GRCGYC	3 cut(s)	300, 1182, 1263
Hin1II	CATG	9 cut(s)	623, 796, 913, 1430, 1565, 1599, 1992, 2003, 2345
Hin6I	GCGC	2 cut(s)	200, 1654
HinP1I	GCGC	2 cut(s)	200, 1654
HincII	GTYRAC	2 cut(s)	667, 1322
HindII	GTYRAC	2 cut(s)	667, 1322
HpaII	CCGG	2 cut(s)	1212, 2770
HphI	GGTGA	4 cut(s)	524, 982, 2015, 2387
Hpy188I	TCNGA	9 cut(s)	414, 612, 1060, 1096, 1108, 1249, 1852, 1996, 2557
Hpy99I	CGWCG	7 cut(s)	1142, 1145, 1154, 1178, 1181, 1184, 1208
HpyAV	CCTTC	2 cut(s)	256, 523
HpyCH4IV	ACGT	3 cut(s)	137, 504, 703
HpyF10VI	GCNNNNNNNGC	7 cut(s)	458, 1217, 1896, 2188, 2197, 2757, 2766
HpySE526I	ACGT	3 cut(s)	137, 504, 703
Hsp92I	GRCGYC	3 cut(s)	300, 1182, 1263
Hsp92II	CATG	9 cut(s)	623, 796, 913, 1430, 1565, 1599, 1992, 2003, 2345
HspAI	GCGC	2 cut(s)	200, 1654
KroI	GCCGGC	1 cut(s)	1211
KroNI	GCCGGC	1 cut(s)	1213
Kzo9I	GATC	5 cut(s)	655, 812, 1053, 1663, 1754
LmnI	GCTCC	6 cut(s)	532, 616, 635, 1398, 2422, 2675
MaeI	CTAG	6 cut(s)	74, 159, 375, 1383, 2108, 2171
MaeII	ACGT	3 cut(s)	137, 504, 703
MaeIII	GTNAC	9 cut(s)	352, 748, 897, 988, 1589, 2030, 2238, 2268, 2503
MalI	GATC	5 cut(s)	657, 814, 1055, 1665, 1756
MboI	GATC	5 cut(s)	655, 812, 1053, 1663, 1754
MflI	RGATCY	3 cut(s)	812, 1053, 1754
MhlI	GDGCHC	4 cut(s)	81, 228, 2337, 2539
MlsI	TGGCCA	2 cut(s)	1820, 2096
MluNI	TGGCCA	2 cut(s)	1820, 2096
MlyI	GAGTC	6 cut(s)	227, 1238, 1586, 2246, 2393, 2558
MmeI	TCCRAC	3 cut(s)	613, 628, 2373
Mox20I	TGGCCA	2 cut(s)	1820, 2096
Mph1103I	ATGCAT	2 cut(s)	1563, 1935
MroNI	GCCGGC	1 cut(s)	1211
MroXI	GAANNNNTTC	3 cut(s)	179, 1455, 2400
MscI	TGGCCA	2 cut(s)	1820, 2096
MseI	TTAA	5 cut(s)	1518, 1626, 1646, 1701, 2466
MslI	CAYNNNNRTG	3 cut(s)	857, 2340, 2409
Msp20I	TGGCCA	2 cut(s)	1820, 2096
MspA1I	CMGCKG	1 cut(s)	1167
MspI	CCGG	2 cut(s)	1212, 2770
MspR9I	CCNGG	6 cut(s)	603, 714, 809, 1638, 2266, 2659
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	6 cut(s)	603, 714, 809, 1638, 2266, 2659
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	7 cut(s)	458, 1217, 1896, 2188, 2197, 2757, 2766
NaeI	GCCGGC	1 cut(s)	1213
NcoI	CCATGG	1 cut(s)	792
NdeI	CATATG	2 cut(s)	97, 2308
NdeII	GATC	5 cut(s)	655, 812, 1053, 1663, 1754
NgoMIV	GCCGGC	1 cut(s)	1211
NheI	GCTAGC	1 cut(s)	1382
NlaIII	CATG	9 cut(s)	623, 796, 913, 1430, 1565, 1599, 1992, 2003, 2345
NlaIV	GGNNCC	2 cut(s)	790, 2451
NmeAIII	GCCGAG	1 cut(s)	2407
NmuCI	GTSAC	6 cut(s)	748, 897, 988, 1589, 2238, 2503
NsiI	ATGCAT	2 cut(s)	1563, 1935
NspI	RCATGY	2 cut(s)	1565, 2345
PaeI	GCATGC	1 cut(s)	1565
PaqCI	CACCTGC	1 cut(s)	770
PceI	AGGCCT	1 cut(s)	2264
PcsI	WCGNNNNNNNCGW	7 cut(s)	237, 1125, 1134, 1146, 1149, 1212, 1233
PctI	GAATGC	1 cut(s)	220
PdiI	GCCGGC	1 cut(s)	1213
PdmI	GAANNNNTTC	3 cut(s)	179, 1455, 2400
PfeI	GAWTC	4 cut(s)	1103, 1253, 1847, 2690
PflFI	GACNNNGTC	1 cut(s)	236
PflMI	CCANNNNNTGG	1 cut(s)	1673
PfoI	TCCNGGA	1 cut(s)	1636
PleI	GAGTC	6 cut(s)	227, 1238, 1586, 2245, 2392, 2558
PmaCI	CACGTG	1 cut(s)	138
PmlI	CACGTG	1 cut(s)	138
PpsI	GAGTC	6 cut(s)	227, 1238, 1586, 2245, 2392, 2558
Ppu21I	YACGTR	3 cut(s)	138, 505, 704
PpuMI	RGGWCCY	1 cut(s)	2449
PshAI	GACNNNNGTC	1 cut(s)	1317
PshBI	ATTAAT	2 cut(s)	1626, 1701
Psp124BI	GAGCTC	2 cut(s)	228, 2539
Psp5II	RGGWCCY	1 cut(s)	2449
Psp6I	CCWGG	6 cut(s)	601, 712, 807, 1636, 2264, 2657
PspCI	CACGTG	1 cut(s)	138
PspFI	CCCAGC	2 cut(s)	1016, 1599
PspGI	CCWGG	6 cut(s)	601, 712, 807, 1636, 2264, 2657
PspN4I	GGNNCC	2 cut(s)	790, 2451
PspPI	GGNCC	5 cut(s)	327, 566, 1634, 2449, 2703
PspPPI	RGGWCCY	1 cut(s)	2449
PstI	CTGCAG	2 cut(s)	1381, 1570
PstNI	CAGNNNCTG	1 cut(s)	2744
PsuI	RGATCY	3 cut(s)	812, 1053, 1754
PsyI	GACNNNGTC	1 cut(s)	236
RsaI	GTAC	5 cut(s)	1425, 1618, 1780, 2117, 2295
RsaNI	GTAC	5 cut(s)	1424, 1617, 1779, 2116, 2294
RseI	CAYNNNNRTG	3 cut(s)	857, 2340, 2409
SacI	GAGCTC	2 cut(s)	228, 2539
SaqAI	TTAA	5 cut(s)	1518, 1626, 1646, 1701, 2466
Sau3AI	GATC	5 cut(s)	655, 812, 1053, 1663, 1754
Sau96I	GGNCC	5 cut(s)	327, 566, 1634, 2449, 2703
ScaI	AGTACT	1 cut(s)	2295
SchI	GAGTC	6 cut(s)	227, 1238, 1586, 2246, 2393, 2558
ScrFI	CCNGG	6 cut(s)	603, 714, 809, 1638, 2266, 2659
SduI	GDGCHC	4 cut(s)	81, 228, 2337, 2539
SfcI	CTRYAG	4 cut(s)	1162, 1353, 1377, 1566
SinI	GGWCC	5 cut(s)	327, 566, 1634, 2449, 2703
SmiMI	CAYNNNNRTG	3 cut(s)	857, 2340, 2409
SmlI	CTYRAG	4 cut(s)	209, 536, 1369, 2204
SmoI	CTYRAG	4 cut(s)	209, 536, 1369, 2204
SphI	GCATGC	1 cut(s)	1565
SseBI	AGGCCT	1 cut(s)	2264
SsiI	CCGC	8 cut(s)	198, 1167, 1170, 1185, 1188, 1266, 1396, 2035
SspI	AATATT	3 cut(s)	1650, 1736, 2683
SspMI	CTAG	6 cut(s)	74, 159, 375, 1383, 2108, 2171
SstI	GAGCTC	2 cut(s)	228, 2539
StuI	AGGCCT	1 cut(s)	2264
StyD4I	CCNGG	6 cut(s)	601, 712, 807, 1636, 2264, 2657
StyI	CCWWGG	4 cut(s)	330, 792, 1074, 1921
TaiI	ACGT	3 cut(s)	140, 507, 706
TaqI	TCGA	9 cut(s)	231, 240, 255, 658, 1119, 1236, 1276, 1764, 2533
TatI	WGTACW	3 cut(s)	1423, 1778, 2293
TauI	GCSGC	5 cut(s)	1170, 1173, 1187, 1190, 1268
TfiI	GAWTC	4 cut(s)	1103, 1253, 1847, 2690
Tru1I	TTAA	5 cut(s)	1518, 1626, 1646, 1701, 2466
Tru9I	TTAA	5 cut(s)	1518, 1626, 1646, 1701, 2466
TseFI	GTSAC	6 cut(s)	748, 897, 988, 1589, 2238, 2503
Tsp45I	GTSAC	6 cut(s)	748, 897, 988, 1589, 2238, 2503
TspGWI	ACGGA	2 cut(s)	591, 1319
Tth111I	GACNNNGTC	1 cut(s)	236
Van91I	CCANNNNNTGG	1 cut(s)	1673
VpaK11BI	GGWCC	5 cut(s)	327, 566, 1634, 2449, 2703
VspI	ATTAAT	2 cut(s)	1626, 1701
XapI	RAATTY	9 cut(s)	61, 432, 478, 678, 881, 903, 1861, 1958, 2524
XbaI	TCTAGA	2 cut(s)	158, 2107
XceI	RCATGY	2 cut(s)	1565, 2345
XcmI	CCANNNNNNNNNTGG	1 cut(s)	859
XmiI	GTMKAC	1 cut(s)	700
XmnI	GAANNNNTTC	3 cut(s)	179, 1455, 2400
XspI	CTAG	6 cut(s)	74, 159, 375, 1383, 2108, 2171
ZrmI	AGTACT	1 cut(s)	2295
Zsp2I	ATGCAT	2 cut(s)	1563, 1935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.